mRNA_D-dichotoma_M_contig1078.681.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1078.681.1
Unique NamemRNA_D-dichotoma_M_contig1078.681.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig1078.681.1 vs. uniprot
Match: D7FXS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXS4_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.650e-13
Identity = 38/46 (82.61%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:  658 EADFFEVESTWVNITLTAVCVVCAGLAAGLTMGLVSIEPLEMAIKQ 795
            E DF ++ESTWVNI +T+VCVVCAGLAAGLTMGL+SIEPLEMAIKQ
Sbjct:  197 EEDFLQIESTWVNIAMTSVCVVCAGLAAGLTMGLLSIEPLEMAIKQ 242
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BLAST of mRNA_D-dichotoma_M_contig1078.681.1 vs. uniprot
Match: A0A6H5KPI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPI7_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.800e-13
Identity = 38/46 (82.61%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:  658 EADFFEVESTWVNITLTAVCVVCAGLAAGLTMGLVSIEPLEMAIKQ 795
            E DF ++ESTWVNI +T+VCVVCAGLAAGLTMGL+SIEPLEMAIKQ
Sbjct:  194 EEDFLQIESTWVNIAMTSVCVVCAGLAAGLTMGLLSIEPLEMAIKQ 239
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1078.681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXS4_ECTSI1.650e-1382.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPI7_9PHAE1.800e-1382.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1078contigD-dichotoma_M_contig1078:216561..219274 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.1
Seed ortholog evalue1.4e-12
Seed eggNOG ortholog2880.D7FXS4
KEGG koko:K16302
KEGG TC9.A.40.3
EggNOG free text desc.magnesium ion homeostasis
EggNOG OGsCOG1253@1,KOG2118@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categorysignal peptide
Exons2
Model size796
Cds size654
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1078.681.1prot_D-dichotoma_M_contig1078.681.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1078 216702..219274 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927573.7453592-UTR-D-dichotoma_M_contig1078:216560..2167011622927573.7453592-UTR-D-dichotoma_M_contig1078:216560..216701Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1078 216561..216701 +
1690798043.1651473-UTR-D-dichotoma_M_contig1078:216560..2167011690798043.1651473-UTR-D-dichotoma_M_contig1078:216560..216701Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1078 216561..216701 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927573.7665644-CDS-D-dichotoma_M_contig1078:216701..2168151622927573.7665644-CDS-D-dichotoma_M_contig1078:216701..216815Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1078 216702..216815 +
1690798043.1810734-CDS-D-dichotoma_M_contig1078:216701..2168151690798043.1810734-CDS-D-dichotoma_M_contig1078:216701..216815Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1078 216702..216815 +
1622927573.780071-CDS-D-dichotoma_M_contig1078:218734..2192741622927573.780071-CDS-D-dichotoma_M_contig1078:218734..219274Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1078 218735..219274 +
1690798043.1934626-CDS-D-dichotoma_M_contig1078:218734..2192741690798043.1934626-CDS-D-dichotoma_M_contig1078:218734..219274Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1078 218735..219274 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1078.681.1

>prot_D-dichotoma_M_contig1078.681.1 ID=prot_D-dichotoma_M_contig1078.681.1|Name=mRNA_D-dichotoma_M_contig1078.681.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=218bp
MGLGVLVFSLFAVGLIPGCNSEPSAPAVERDVATNPLKDVVQDIILAHHY
PYASRADDDPELERSHAAAGSLAEEIIVALRAEFCPPTGLSDSEPALRRS
ELIELGLIVPTAGGETAGVELRPSPVAVGAEDTRAGSSSERRTLGNGTGG
DRERRITDEDVAPPERRSRFLSEADFFEVESTWVNITLTAVCVVCAGLAA
GLTMGLVSIEPLEMAIKQ
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mRNA from alignment at D-dichotoma_M_contig1078:216561..219274+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1078.681.1 ID=mRNA_D-dichotoma_M_contig1078.681.1|Name=mRNA_D-dichotoma_M_contig1078.681.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=2714bp|location=Sequence derived from alignment at D-dichotoma_M_contig1078:216561..219274+ (Dictyota dichotoma ODC1387m male)
CAGGTGCATCAACGTTTTCCGTCGAAAGCTCCACGTAAGCTACCCTCCAG
AGTAGTGGCGCAAGATCCTTGTACGGGAGAGGGTTGAAGCAGGGTCTCAG
CAGAGGTGTGAACCTCGGGAGTGGATCTACTCTAGCATCTGATGGGGTTG
GGCGTATTGGTCTTTTCGCTCTTCGCGGTCGGCTTAATTCCTGGATGTAA
CTCTGAACCAAGTGCACCTGCTGTTGAAAGGGATGTAGCTACGAATCCTC
TGAAGGTGAGCTTCGTCATCGAAAAGGCGCATCGTCACCTACTTTTGGCT
TTTTCGCGAGGTATCCAAGAATTGAGATGAAGGCCGTGTTCTGTGTTCAG
GACGTGAACGAGTCGCCTTGCTCCGACTTAGGACATACCTTCCTTGACCT
TCAAACTCCACCTGGCCGCAGCTCTGGGAACATAGGGTCTCTGTAGCGGA
CATAAATTCCCCTCCCTTTGCCTACCAAACAAGAGTATTTGCTACCTTCC
AGGCACATTAAAGATGGACGCTGACTAATGTCACCAAAACGATGCTCGTG
CCCTGCTACTGTTCATCCTGATATGACCTCAAAGTGCTCTAATCATGTGC
TACTGTTGGCTCCTGGACTTTATGATGCTGGTGAACACGGTAGAGGGACC
TACGCTCGAGAACCCGAATAGCCGTGGGCGAACATGAGTCGCCCCGAAAC
CCAAGAGAGCCTCGCAGGAAGAGAAAATGCCCTACTCTCATCTTCCTTGA
CGCCCTTGCTTGCTCTAGCCCAAGAGCATGCGCTTTCTCGACAGCACACC
ATTGTCATCTTGAAGGATGCTGCGGAGGAACATGAAACCTCCCACCCCGC
AGCAAAACGTTCTCAATCTAGACGACTTTCCAAGCCCCTTGCGCCCACTG
CAGCTCTCGAGCAGTGCTCAGCTTGAGTCAAACTTGATGCCTATGAATCC
TGTTAGCGTCTGTGCTTCCTAGAACGCGGGCCTCGAATGCCAAGTTTTTC
GCCAAGTGCATCAAGTCCCAATCACTAGCCCCACACGACAGATCGTCCGT
CCGCGGATTCGTAAGAGCACAGACGACGCTCGACGAGCTAGACCCCAGGG
AGCTCCCGCGCCTCGCGGAAGCGACCAGAGGAGGTGGCCGGCATGTTGTG
GGTGAACAATCGAATCTGGCGTAGAGTCTGTCTTCCATACCATTACTTCT
CCGAATGACGCTATCCTGGGTGAACTGTGCTGACTGTACGGTGTTTAAAG
ACAATGAGAACAGGGGAAAATGCTCGATGCAAGGGGAAGTGTCAATCCCT
GCATCGGTAAGGTAGTGCTCACGGCAAGGTGTGGAACGGGAGTACGTGAC
GAAGACAACAGTCCAAATCTGACCCCCCAAAATTGTGAGCAAAAAATTTC
AGGGTGGGCCTCGGTAGTTTTACCGCCAAAAAAAAAACGGAAATACTGTA
CCGGCGGAAAAAAAGCGAATAAAAAAAAGAAGTCGGGAAAAAAAAAATGC
TGCCAGAGAGAATAGAACCCACAACCTTAAGGGCCGGAATCAACGGGAAG
CAGATTTTTCAATTTTCATTTTATCAAAATCAAAATTGGGCCCTGATTGG
TCAGCGCGACATCTGTGTCGTGAACGCCTCTTAGATTTTGGAGGCGTTCT
TATACGCTGACCAATCAGGGCCCAATTTTGATTTTGATAAAATGAAAATT
GAAAAATCTGCTTCCCGTTGATTCCGGCCCTTAAGGTTGTGGGTTCTATT
CTCTCTGGCAGCATTTTTTTCCCGATTCGTTTTTTTCCCCCTTTTTTTCC
CGCCAATACAGTACAGTATTTCGGTTTCTTTTTTTGGTGGTAATACTACC
GAGGACCGCCCTGTAAAATTTGGGGCTAAATTTGGACCGTTTCTTTCCCT
CATCCTCGCGTACTCCGTTACAGTATATACCCTTGAGCACTACGGTATAT
GCTACGGTGTTCAATGCCCCCCCAATCCCGGATAGCAGAAAATTCGATAG
AATTCCCGCAGCGACGTGAAAACAGCGTAGGCCCACGAGCTGCAGCCCTC
GAGCAGCCCACGCGCCTGAGCGTCCCTGCGTTTGCTTGGGGAGTATCGCA
TCCTCCGCCGATTGCCCACCCCTGTCTTTTAGACCATGACAGACGGTGCG
GTACGCCTGCCGACGTCTTTCCAGGACGTGGTGCAGGACATCATCCTGGC
CCATCACTATCCGTACGCGTCACGGGCAGACGATGACCCCGAGTTGGAGA
GGAGTCATGCGGCGGCCGGGTCTCTCGCTGAGGAGATCATCGTGGCGCTC
AGAGCTGAGTTCTGTCCCCCCACTGGGTTGAGCGACTCCGAACCAGCTCT
CCGGCGATCTGAATTGATCGAGCTCGGCCTGATCGTGCCAACGGCCGGAG
GAGAAACGGCCGGGGTGGAGCTGAGGCCGTCCCCCGTGGCCGTGGGTGCC
GAAGACACTCGGGCCGGGAGTTCCAGCGAAAGACGCACACTGGGGAACGG
GACGGGTGGTGATCGCGAGAGGCGAATAACCGACGAGGACGTCGCTCCGC
CTGAAAGGCGGAGTCGGTTCCTGAGCGAGGCGGACTTCTTCGAGGTGGAG
AGCACCTGGGTGAACATCACCCTCACGGCCGTGTGCGTCGTGTGCGCGGG
GCTGGCGGCGGGGCTGACCATGGGGCTGGTTTCGATCGAGCCCCTGGAGA
TGGCGATCAAGCAA
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1078:216561..219274+

>mRNA_D-dichotoma_M_contig1078.681.1 ID=mRNA_D-dichotoma_M_contig1078.681.1|Name=mRNA_D-dichotoma_M_contig1078.681.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1308bp|location=Sequence derived from alignment at D-dichotoma_M_contig1078:216561..219274+ (Dictyota dichotoma ODC1387m male)
ATGGGGTTGGGCGTATTGGTCTTTTCGCTCTTCGCGGTCGGCTTAATTCC
TGGATGTAACTCTGAACCAAGTGCACCTGCTGTTGAAAGGGATGTAGCTA
CGAATCCTCTGAAGATGGGGTTGGGCGTATTGGTCTTTTCGCTCTTCGCG
GTCGGCTTAATTCCTGGATGTAACTCTGAACCAAGTGCACCTGCTGTTGA
AAGGGATGTAGCTACGAATCCTCTGAAGGACGTGGTGCAGGACATCATCC
TGGCCCATCACTATCCGTACGCGTCACGGGCAGACGATGACCCCGAGTTG
GAGAGGAGTCATGCGGCGGCCGGGTCTCTCGCTGAGGAGATCATCGTGGC
GCTCAGAGCTGAGTTCTGTCCCCCCACTGGGTTGAGCGACTCCGAACCAG
CTCTCCGGCGATCTGAATTGATCGAGCTCGGCCTGATCGTGCCAACGGCC
GGAGGAGAAACGGCCGGGGTGGAGCTGAGGCCGTCCCCCGTGGCCGTGGG
TGCCGAAGACACTCGGGCCGGGAGTTCCAGCGAAAGACGCACACTGGGGA
ACGGGACGGGTGGTGATCGCGAGAGGCGAATAACCGACGAGGACGTCGCT
CCGCCTGAAAGGCGGAGTCGGTTCCTGAGCGAGGCGGACTTCTTCGAGGT
GGAGAGCACCTGGGTGAACATCACCCTCACGGCCGTGTGCGTCGTGTGCG
CGGGGCTGGCGGCGGGGCTGACCATGGGGCTGGTTTCGATCGAGCCCCTG
GAGATGGCGATCAAGCAAGACGTGGTGCAGGACATCATCCTGGCCCATCA
CTATCCGTACGCGTCACGGGCAGACGATGACCCCGAGTTGGAGAGGAGTC
ATGCGGCGGCCGGGTCTCTCGCTGAGGAGATCATCGTGGCGCTCAGAGCT
GAGTTCTGTCCCCCCACTGGGTTGAGCGACTCCGAACCAGCTCTCCGGCG
ATCTGAATTGATCGAGCTCGGCCTGATCGTGCCAACGGCCGGAGGAGAAA
CGGCCGGGGTGGAGCTGAGGCCGTCCCCCGTGGCCGTGGGTGCCGAAGAC
ACTCGGGCCGGGAGTTCCAGCGAAAGACGCACACTGGGGAACGGGACGGG
TGGTGATCGCGAGAGGCGAATAACCGACGAGGACGTCGCTCCGCCTGAAA
GGCGGAGTCGGTTCCTGAGCGAGGCGGACTTCTTCGAGGTGGAGAGCACC
TGGGTGAACATCACCCTCACGGCCGTGTGCGTCGTGTGCGCGGGGCTGGC
GGCGGGGCTGACCATGGGGCTGGTTTCGATCGAGCCCCTGGAGATGGCGA
TCAAGCAA
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