mRNA_D-dichotoma_M_contig1077.674.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1077.674.1
Unique NamemRNA_D-dichotoma_M_contig1077.674.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1077.674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1077contigD-dichotoma_M_contig1077:172333..173302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size970
Cds size486
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1077.674.1prot_D-dichotoma_M_contig1077.674.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1077 172422..172907 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927573.6143475-UTR-D-dichotoma_M_contig1077:172332..1724211622927573.6143475-UTR-D-dichotoma_M_contig1077:172332..172421Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1077 172333..172421 +
1690798043.1149306-UTR-D-dichotoma_M_contig1077:172332..1724211690798043.1149306-UTR-D-dichotoma_M_contig1077:172332..172421Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1077 172333..172421 +
1622927573.638765-UTR-D-dichotoma_M_contig1077:172907..1733021622927573.638765-UTR-D-dichotoma_M_contig1077:172907..173302Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1077 172908..173302 +
1690798043.1371326-UTR-D-dichotoma_M_contig1077:172907..1733021690798043.1371326-UTR-D-dichotoma_M_contig1077:172907..173302Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1077 172908..173302 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927573.627472-CDS-D-dichotoma_M_contig1077:172421..1729071622927573.627472-CDS-D-dichotoma_M_contig1077:172421..172907Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1077 172422..172907 +
1690798043.1287525-CDS-D-dichotoma_M_contig1077:172421..1729071690798043.1287525-CDS-D-dichotoma_M_contig1077:172421..172907Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1077 172422..172907 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1077.674.1

>prot_D-dichotoma_M_contig1077.674.1 ID=prot_D-dichotoma_M_contig1077.674.1|Name=mRNA_D-dichotoma_M_contig1077.674.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=162bp
MAPCKMDGCLHPELKGGQHHCPGCKMMVHNLCHQQLSGGLEGGPFFCGVD
KCNDEDDDVEPENLKRKENSRECGTLSSRRGSGGVGDISGTGEKRHRFCN
AVSCLAPGKMMDMRCGTCSAACHGVCVANTIALQGCRACLDTSAPSSAQR
GAYSLCFARVF*
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mRNA from alignment at D-dichotoma_M_contig1077:172333..173302+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1077.674.1 ID=mRNA_D-dichotoma_M_contig1077.674.1|Name=mRNA_D-dichotoma_M_contig1077.674.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=970bp|location=Sequence derived from alignment at D-dichotoma_M_contig1077:172333..173302+ (Dictyota dichotoma ODC1387m male)
CAATTGGTTCGGTGAAGCCCTGATTGCTCAGTCCGAGAGGAACGAACCAA
AACGCAATAAACGGAGTAAGCTGCAACCTCTCGCTTACAATGGCACCCTG
CAAGATGGACGGTTGCCTTCACCCGGAACTAAAAGGTGGACAGCACCATT
GTCCGGGATGCAAGATGATGGTACACAATCTCTGCCATCAGCAACTATCT
GGAGGTTTAGAGGGTGGGCCCTTCTTCTGCGGCGTAGACAAGTGCAACGA
TGAAGATGATGATGTCGAGCCGGAGAACTTAAAGCGGAAGGAAAACAGTA
GAGAGTGTGGGACACTGTCGTCACGGAGAGGCTCGGGAGGTGTTGGTGAC
ATTAGTGGGACGGGAGAGAAGAGACATAGGTTTTGCAACGCCGTTTCTTG
CTTGGCTCCTGGGAAGATGATGGACATGAGATGTGGTACCTGCAGCGCTG
CTTGTCACGGAGTTTGTGTGGCGAACACAATCGCGTTGCAAGGCTGCCGA
GCCTGTCTGGACACCTCCGCGCCTTCTTCAGCTCAGCGAGGTGCGTACAG
TTTATGCTTTGCCCGGGTCTTCTAGCGTGTAGGTTATTGAACGTCGTAGG
CTTCCGACTGGCGCTTGTATTCCGACGTGATGTTCATGTCCTAGGTTTTT
GGTAATAACTCATGTTGACCCTTCCTCAGAATGGAAGACAGGTTTGCATG
TGATGGGAGCAAGTGTGCGTCGAGAACGGTAGGCGATGATACGTCGCACG
GCTTATCCATATAATCCTCCTCGTGAGCAGGATGCATTGTTTCGCGTGAG
TTTCACTCTTGCACGTGGCGCTCATACATATTTATTGAGTACGAAAACAA
TGCGTACGTGGCGATGTCGGCCCCTCCATCACTTGTCAGCATAGCTACTA
CTCGTGTAAGGCAAGGTTTGCTACTCCCAACGATGAGTGTGCTGCGGAAT
CGCATGTTTGTTAGGGTTAC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1077:172333..173302+

>mRNA_D-dichotoma_M_contig1077.674.1 ID=mRNA_D-dichotoma_M_contig1077.674.1|Name=mRNA_D-dichotoma_M_contig1077.674.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=972bp|location=Sequence derived from alignment at D-dichotoma_M_contig1077:172333..173302+ (Dictyota dichotoma ODC1387m male)
ATGGCACCCTGCAAGATGGACGGTTGCCTTCACCCGGAACTAAAAGGTGG
ACAGCACCATTGTCCGGGATGCAAGATGATGGTACACAATCTCTGCCATC
AGCAACTATCTGGAGGTTTAGAGGGTGGGCCCTTCTTCTGCGGCGTAGAC
AAGTGCAACGATGAAGATGATGATGTCGAGCCGGAGAACTTAAAGCGGAA
GGAAAACAGTAGAGAGTGTGGGACACTGTCGTCACGGAGAGGCTCGGGAG
GTGTTGGTGACATTAGTGGGACGGGAGAGAAGAGACATAGGTTTTGCAAC
GCCGTTTCTTGCTTGGCTCCTGGGAAGATGATGGACATGAGATGTGGTAC
CTGCAGCGCTGCTTGTCACGGAGTTTGTGTGGCGAACACAATCGCGTTGC
AAGGCTGCCGAGCCTGTCTGGACACCTCCGCGCCTTCTTCAGCTCAGCGA
GGTGCGTACAGTTTATGCTTTGCCCGGGTCTTCTAGATGGCACCCTGCAA
GATGGACGGTTGCCTTCACCCGGAACTAAAAGGTGGACAGCACCATTGTC
CGGGATGCAAGATGATGGTACACAATCTCTGCCATCAGCAACTATCTGGA
GGTTTAGAGGGTGGGCCCTTCTTCTGCGGCGTAGACAAGTGCAACGATGA
AGATGATGATGTCGAGCCGGAGAACTTAAAGCGGAAGGAAAACAGTAGAG
AGTGTGGGACACTGTCGTCACGGAGAGGCTCGGGAGGTGTTGGTGACATT
AGTGGGACGGGAGAGAAGAGACATAGGTTTTGCAACGCCGTTTCTTGCTT
GGCTCCTGGGAAGATGATGGACATGAGATGTGGTACCTGCAGCGCTGCTT
GTCACGGAGTTTGTGTGGCGAACACAATCGCGTTGCAAGGCTGCCGAGCC
TGTCTGGACACCTCCGCGCCTTCTTCAGCTCAGCGAGGTGCGTACAGTTT
ATGCTTTGCCCGGGTCTTCTAG
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