mRNA_D-dichotoma_M_contig1077.673.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1077.673.1
Unique NamemRNA_D-dichotoma_M_contig1077.673.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1077.673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1077contigD-dichotoma_M_contig1077:122176..123635 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size314
Cds size312
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927573.6813564-CDS-D-dichotoma_M_contig1077:122175..1224361622927573.6813564-CDS-D-dichotoma_M_contig1077:122175..122436Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1077 122176..122436 -
1690798043.1458774-CDS-D-dichotoma_M_contig1077:122175..1224361690798043.1458774-CDS-D-dichotoma_M_contig1077:122175..122436Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1077 122176..122436 -
1622927573.6986146-CDS-D-dichotoma_M_contig1077:123584..1236351622927573.6986146-CDS-D-dichotoma_M_contig1077:123584..123635Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1077 123585..123635 -
1690798043.154516-CDS-D-dichotoma_M_contig1077:123584..1236351690798043.154516-CDS-D-dichotoma_M_contig1077:123584..123635Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1077 123585..123635 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1077.673.1prot_D-dichotoma_M_contig1077.673.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1077 122176..123635 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1077.673.1

>prot_D-dichotoma_M_contig1077.673.1 ID=prot_D-dichotoma_M_contig1077.673.1|Name=mRNA_D-dichotoma_M_contig1077.673.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=104bp
MQVAQHDNQDDIMEAIMALQRDQQQQRYSWTEINPSDVNFVNNRKSLGSG
AFSTVQLARWKGACVAVKVINESNSASNTTIRALRKDLRVHHHLRHEFIT
HLYG
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mRNA from alignment at D-dichotoma_M_contig1077:122176..123635-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1077.673.1 ID=mRNA_D-dichotoma_M_contig1077.673.1|Name=mRNA_D-dichotoma_M_contig1077.673.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=1460bp|location=Sequence derived from alignment at D-dichotoma_M_contig1077:122176..123635- (Dictyota dichotoma ODC1387m male)
ATGCAAGTCGCCCAACATGACAACCAAGACGACATCATGGAAGCTATCAT
GGTGAGAAGTACTTCCTCCATCAACTTGGCGAAGAAGCTAAGGAATGAAG
GAACCTTAACGGAAGTAGTGCGAGGTAGTGGTGCGACCTGTCGTAACAAC
CGGAATGATGAACTCTCGCAGGGTGCTTGCCATGCGTCCACGCTGACCCA
GAAGGGTCGATGATGGGACTGTCAAATATAGGTCGATATATTTCAATCAT
CCCAGGTTTGTATACCTTCAGCTAGATGATCGATTCAGCTCTTTTTCAAA
TCATGACTGACTCTGATTCATCATGAGAAACGAGAGGAAGATGATGCACC
TCTCACAGGCGGTCACGAACATGTTTTGATGGTGACTTGTGGAGTCCAGT
GAGGAAACACAGGTGGAATTAGTCGGGTGCATGAAGCATTGAACGGGTTT
ATCCTTCCGGCCAATCGGGAATGCTCGCTTTAGATCATAGGCTGACCCTT
TTTTTCTGAGATCCAATACCATCCATTGTCCACCGGCGCTGGAAGAGGAG
TGAGGAAGGCGGAAAGCTTTCATCACCTACACCTAGGTCCACCTCTACTT
GGGACGGCATTCGTTGGGTGGGGGCGGGACGGATTGTGCGGGTTCATCGT
GTAGTTTAAGAGGAAACCCTCGTCGAAGATCGTTGGTCGAATTATTTTCG
TCTCCGAACGAATACCGTCCATCATAGGCATGTTGAGAGTAGTGCGCTCG
TTTGAGATATCCTAACGTGGGAAGGCAATCAGTTTTCATTACATGTACCT
TACTCCACTGGCTAGAAGCCTTTTTAACTGCTCTCATCCCGATCTTCAAA
GCAGTCGAGGCGGTCGTATTATGAATTGGAATATTATGAACCGTGCTACC
CGGGCACACACAGAGAACGATTTTATCCGTTGGTGTATCAACGACGAAAG
TCGCTATATCAAGGCACCTGGTTGATCCTCTACTGCGTCCCATGTCGAAT
GCAATTTCCCTAGGACGGATGGACATGTTTTTTTTTCGTGTGTTCAAAGC
GCGGAAGTCCTCTGGCATCGACTCGTTCGGGAACAACTCGGGGATAGATT
TGTTGATGAGGAATCTGTTTCCACGGTTCTACCTTGTGACCTCCAAGGGA
TGGATAATGGCGTCATTTCGCCATGTGTATTGTTTTCCACGTCCTCCAGG
CTCTGCAGAGAGACCAGCAACAGCAACGCTACAGCTGGACCGAAATCAAT
CCTTCCGACGTCAACTTCGTCAATAATCGCAAGTCATTGGGATCGGGGGC
TTTTTCCACAGTGCAGTTGGCAAGATGGAAGGGTGCCTGTGTCGCAGTAA
AGGTTATTAACGAGTCAAACAGCGCTTCGAACACCACCATTCGTGCTCTT
CGGAAGGATTTGCGAGTCCACCACCACCTGCGTCACGAGTTCATCACTCA
CCTTTACGGA
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1077:122176..123635-

>mRNA_D-dichotoma_M_contig1077.673.1 ID=mRNA_D-dichotoma_M_contig1077.673.1|Name=mRNA_D-dichotoma_M_contig1077.673.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=624bp|location=Sequence derived from alignment at D-dichotoma_M_contig1077:122176..123635- (Dictyota dichotoma ODC1387m male)
ATGCAAGTCGCCCAACATGACAACCAAGACGACATCATGGAAGCTATCAT
GATGCAAGTCGCCCAACATGACAACCAAGACGACATCATGGAAGCTATCA
TGGCTCTGCAGAGAGACCAGCAACAGCAACGCTACAGCTGGACCGAAATC
AATCCTTCCGACGTCAACTTCGTCAATAATCGCAAGTCATTGGGATCGGG
GGCTTTTTCCACAGTGCAGTTGGCAAGATGGAAGGGTGCCTGTGTCGCAG
TAAAGGTTATTAACGAGTCAAACAGCGCTTCGAACACCACCATTCGTGCT
CTTCGGAAGGATTTGCGAGTCCACCACCACCTGCGTCACGAGTTCATCAC
TCACCTTTACGGAGCTCTGCAGAGAGACCAGCAACAGCAACGCTACAGCT
GGACCGAAATCAATCCTTCCGACGTCAACTTCGTCAATAATCGCAAGTCA
TTGGGATCGGGGGCTTTTTCCACAGTGCAGTTGGCAAGATGGAAGGGTGC
CTGTGTCGCAGTAAAGGTTATTAACGAGTCAAACAGCGCTTCGAACACCA
CCATTCGTGCTCTTCGGAAGGATTTGCGAGTCCACCACCACCTGCGTCAC
GAGTTCATCACTCACCTTTACGGA
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