mRNA_D-dichotoma_M_contig1076.669.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1076.669.1
Unique NamemRNA_D-dichotoma_M_contig1076.669.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1076.669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1076contigD-dichotoma_M_contig1076:19204..19727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size524
Cds size453
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1076.669.1prot_D-dichotoma_M_contig1076.669.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1076 19264..19716 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927573.0836706-UTR-D-dichotoma_M_contig1076:19203..192631622927573.0836706-UTR-D-dichotoma_M_contig1076:19203..19263Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1076 19204..19263 +
1690798042.8932376-UTR-D-dichotoma_M_contig1076:19203..192631690798042.8932376-UTR-D-dichotoma_M_contig1076:19203..19263Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1076 19204..19263 +
1622927573.1374664-UTR-D-dichotoma_M_contig1076:19716..197271622927573.1374664-UTR-D-dichotoma_M_contig1076:19716..19727Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1076 19717..19727 +
1690798042.9161289-UTR-D-dichotoma_M_contig1076:19716..197271690798042.9161289-UTR-D-dichotoma_M_contig1076:19716..19727Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1076 19717..19727 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927573.1252754-CDS-D-dichotoma_M_contig1076:19263..197161622927573.1252754-CDS-D-dichotoma_M_contig1076:19263..19716Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1076 19264..19716 +
1690798042.902832-CDS-D-dichotoma_M_contig1076:19263..197161690798042.902832-CDS-D-dichotoma_M_contig1076:19263..19716Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1076 19264..19716 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1076.669.1

>prot_D-dichotoma_M_contig1076.669.1 ID=prot_D-dichotoma_M_contig1076.669.1|Name=mRNA_D-dichotoma_M_contig1076.669.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=151bp
MVRPVASIRQLLSTELVELRKEDDVADELTENALREALKMYMYKVDHGHF
EAGNFADMPGKSYMKEDCVEELIRAEELEDDMDADDTQEISRLPEVKAEW
DVEAKVFRSKGDTECESTSGCGRCLFPTQAKAEKLRPKLIRDWWVFKVVS
*
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mRNA from alignment at D-dichotoma_M_contig1076:19204..19727+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1076.669.1 ID=mRNA_D-dichotoma_M_contig1076.669.1|Name=mRNA_D-dichotoma_M_contig1076.669.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=524bp|location=Sequence derived from alignment at D-dichotoma_M_contig1076:19204..19727+ (Dictyota dichotoma ODC1387m male)
CCGTTCCTACAGCGATACGACGAGTACACGCAACATCTACGGACTACAGG
TTTGGATGGAATGGTACGGCCGGTGGCGAGTATTCGTCAGCTTTTATCCA
CCGAATTAGTCGAATTGCGGAAAGAAGATGACGTTGCAGACGAATTAACG
GAGAACGCTTTACGCGAGGCATTGAAAATGTACATGTACAAGGTAGATCA
TGGACACTTTGAGGCGGGGAATTTTGCCGATATGCCTGGAAAAAGCTATA
TGAAAGAAGACTGTGTCGAAGAGCTGATTCGCGCTGAGGAACTTGAAGAT
GACATGGATGCTGATGACACACAAGAGATCTCACGATTACCGGAGGTAAA
GGCTGAGTGGGACGTTGAAGCAAAAGTGTTCCGTTCTAAGGGCGATACCG
AATGCGAGAGTACTTCAGGTTGTGGTAGGTGCCTTTTTCCCACACAGGCG
AAAGCAGAGAAATTGAGGCCAAAGTTGATTCGGGACTGGTGGGTATTCAA
GGTAGTCAGCTAGGAAATGACGAG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1076:19204..19727+

>mRNA_D-dichotoma_M_contig1076.669.1 ID=mRNA_D-dichotoma_M_contig1076.669.1|Name=mRNA_D-dichotoma_M_contig1076.669.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=906bp|location=Sequence derived from alignment at D-dichotoma_M_contig1076:19204..19727+ (Dictyota dichotoma ODC1387m male)
ATGGTACGGCCGGTGGCGAGTATTCGTCAGCTTTTATCCACCGAATTAGT
CGAATTGCGGAAAGAAGATGACGTTGCAGACGAATTAACGGAGAACGCTT
TACGCGAGGCATTGAAAATGTACATGTACAAGGTAGATCATGGACACTTT
GAGGCGGGGAATTTTGCCGATATGCCTGGAAAAAGCTATATGAAAGAAGA
CTGTGTCGAAGAGCTGATTCGCGCTGAGGAACTTGAAGATGACATGGATG
CTGATGACACACAAGAGATCTCACGATTACCGGAGGTAAAGGCTGAGTGG
GACGTTGAAGCAAAAGTGTTCCGTTCTAAGGGCGATACCGAATGCGAGAG
TACTTCAGGTTGTGGTAGGTGCCTTTTTCCCACACAGGCGAAAGCAGAGA
AATTGAGGCCAAAGTTGATTCGGGACTGGTGGGTATTCAAGGTAGTCAGC
TAGATGGTACGGCCGGTGGCGAGTATTCGTCAGCTTTTATCCACCGAATT
AGTCGAATTGCGGAAAGAAGATGACGTTGCAGACGAATTAACGGAGAACG
CTTTACGCGAGGCATTGAAAATGTACATGTACAAGGTAGATCATGGACAC
TTTGAGGCGGGGAATTTTGCCGATATGCCTGGAAAAAGCTATATGAAAGA
AGACTGTGTCGAAGAGCTGATTCGCGCTGAGGAACTTGAAGATGACATGG
ATGCTGATGACACACAAGAGATCTCACGATTACCGGAGGTAAAGGCTGAG
TGGGACGTTGAAGCAAAAGTGTTCCGTTCTAAGGGCGATACCGAATGCGA
GAGTACTTCAGGTTGTGGTAGGTGCCTTTTTCCCACACAGGCGAAAGCAG
AGAAATTGAGGCCAAAGTTGATTCGGGACTGGTGGGTATTCAAGGTAGTC
AGCTAG
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