mRNA_D-dichotoma_M_contig1076.668.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1076.668.1
Unique NamemRNA_D-dichotoma_M_contig1076.668.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1076.668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1076contigD-dichotoma_M_contig1076:12189..12599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size411
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1076.668.1prot_D-dichotoma_M_contig1076.668.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1076 12197..12538 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927573.0045185-UTR-D-dichotoma_M_contig1076:12188..121961622927573.0045185-UTR-D-dichotoma_M_contig1076:12188..12196Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1076 12189..12196 +
1690798042.866049-UTR-D-dichotoma_M_contig1076:12188..121961690798042.866049-UTR-D-dichotoma_M_contig1076:12188..12196Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1076 12189..12196 +
1622927573.0261745-UTR-D-dichotoma_M_contig1076:12538..125991622927573.0261745-UTR-D-dichotoma_M_contig1076:12538..12599Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1076 12539..12599 +
1690798042.883492-UTR-D-dichotoma_M_contig1076:12538..125991690798042.883492-UTR-D-dichotoma_M_contig1076:12538..12599Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1076 12539..12599 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927573.013771-CDS-D-dichotoma_M_contig1076:12196..125381622927573.013771-CDS-D-dichotoma_M_contig1076:12196..12538Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1076 12197..12538 +
1690798042.8742354-CDS-D-dichotoma_M_contig1076:12196..125381690798042.8742354-CDS-D-dichotoma_M_contig1076:12196..12538Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1076 12197..12538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1076.668.1

>prot_D-dichotoma_M_contig1076.668.1 ID=prot_D-dichotoma_M_contig1076.668.1|Name=mRNA_D-dichotoma_M_contig1076.668.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=114bp
MQPPSPPSSPFDSMTTNPFVELAPVPIPPMPPFILLALSTPPTRLSFLNW
FPRLPETFLYLECLLNFKFLACKTFDATTAPVPRLGCSNSPFVPPPTHIK
AIALSILLRTRRP*
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mRNA from alignment at D-dichotoma_M_contig1076:12189..12599+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1076.668.1 ID=mRNA_D-dichotoma_M_contig1076.668.1|Name=mRNA_D-dichotoma_M_contig1076.668.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=411bp|location=Sequence derived from alignment at D-dichotoma_M_contig1076:12189..12599+ (Dictyota dichotoma ODC1387m male)
CCCACGCAATGCAACCGCCTTCCCCTCCTTCCTCTCCCTTCGACTCTATG
ACAACCAATCCCTTCGTGGAGCTGGCACCGGTCCCCATCCCACCCATGCC
GCCTTTCATTCTCCTCGCCCTTTCTACACCACCGACCCGCCTTTCGTTCC
TGAATTGGTTCCCCCGTCTGCCAGAGACATTTCTATATCTCGAGTGCCTC
CTCAACTTCAAATTTCTGGCATGCAAGACCTTTGATGCCACGACCGCACC
CGTACCGCGACTGGGCTGCTCCAACAGTCCATTCGTTCCACCGCCCACCC
ACATAAAAGCCATAGCCCTTTCGATTCTCTTGCGGACCCGGCGACCCTAG
TGGAGGCCTAGCAGCGGCGTTCTCAAGCCCCCCCACACGGCTTGCAACCT
GTTCCTGGGAC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1076:12189..12599+

>mRNA_D-dichotoma_M_contig1076.668.1 ID=mRNA_D-dichotoma_M_contig1076.668.1|Name=mRNA_D-dichotoma_M_contig1076.668.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=684bp|location=Sequence derived from alignment at D-dichotoma_M_contig1076:12189..12599+ (Dictyota dichotoma ODC1387m male)
ATGCAACCGCCTTCCCCTCCTTCCTCTCCCTTCGACTCTATGACAACCAA
TCCCTTCGTGGAGCTGGCACCGGTCCCCATCCCACCCATGCCGCCTTTCA
TTCTCCTCGCCCTTTCTACACCACCGACCCGCCTTTCGTTCCTGAATTGG
TTCCCCCGTCTGCCAGAGACATTTCTATATCTCGAGTGCCTCCTCAACTT
CAAATTTCTGGCATGCAAGACCTTTGATGCCACGACCGCACCCGTACCGC
GACTGGGCTGCTCCAACAGTCCATTCGTTCCACCGCCCACCCACATAAAA
GCCATAGCCCTTTCGATTCTCTTGCGGACCCGGCGACCCTAGATGCAACC
GCCTTCCCCTCCTTCCTCTCCCTTCGACTCTATGACAACCAATCCCTTCG
TGGAGCTGGCACCGGTCCCCATCCCACCCATGCCGCCTTTCATTCTCCTC
GCCCTTTCTACACCACCGACCCGCCTTTCGTTCCTGAATTGGTTCCCCCG
TCTGCCAGAGACATTTCTATATCTCGAGTGCCTCCTCAACTTCAAATTTC
TGGCATGCAAGACCTTTGATGCCACGACCGCACCCGTACCGCGACTGGGC
TGCTCCAACAGTCCATTCGTTCCACCGCCCACCCACATAAAAGCCATAGC
CCTTTCGATTCTCTTGCGGACCCGGCGACCCTAG
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