mRNA_D-dichotoma_M_contig1065.603.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1065.603.1
Unique NamemRNA_D-dichotoma_M_contig1065.603.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1065.603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1065contigD-dichotoma_M_contig1065:181724..182665 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size944
Cds size813
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927560.5113614-UTR-D-dichotoma_M_contig1065:181723..1818521622927560.5113614-UTR-D-dichotoma_M_contig1065:181723..181852Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1065 181724..181852 +
1690798036.7176301-UTR-D-dichotoma_M_contig1065:181723..1818521690798036.7176301-UTR-D-dichotoma_M_contig1065:181723..181852Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1065 181724..181852 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927560.527358-CDS-D-dichotoma_M_contig1065:181852..1826651622927560.527358-CDS-D-dichotoma_M_contig1065:181852..182665Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1065 181853..182665 +
1690798036.7280571-CDS-D-dichotoma_M_contig1065:181852..1826651690798036.7280571-CDS-D-dichotoma_M_contig1065:181852..182665Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1065 181853..182665 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1065.603.1prot_D-dichotoma_M_contig1065.603.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1065 181853..182665 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1065.603.1

>prot_D-dichotoma_M_contig1065.603.1 ID=prot_D-dichotoma_M_contig1065.603.1|Name=mRNA_D-dichotoma_M_contig1065.603.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=271bp
MPPESNPIELYAKLTTICHQMASNMEDPAVVLYIRSNLLNMKLLTALPKS
YEAEVRALRVDASMVTLDSSHVKRCIFDRFQFLERAKKKPRHQKDQDEAY
TTHGRGQGRRKDSGKGGRGKLGKRDDTSDRTSLIAATPSVSSNSSQTGSP
KLASSSSSSAIGGRKPCPICQKTTHHADNCPDGTCGRCHGKGHGPCVCGT
GAAAVCEVDDDFDSDFGILVMDELDVKGTRLSAHPGESNLVCSDERECIE
AWYGDSAASRHVTFSKNALCD
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mRNA from alignment at D-dichotoma_M_contig1065:181724..182665+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1065.603.1 ID=mRNA_D-dichotoma_M_contig1065.603.1|Name=mRNA_D-dichotoma_M_contig1065.603.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=942bp|location=Sequence derived from alignment at D-dichotoma_M_contig1065:181724..182665+ (Dictyota dichotoma ODC1387m male)
GAAGATTTGAAGGCTGTCATGACACAAGCTGGTTCACGGAGTGGGGCTTG
GACTGCTCTGAGTGAGTGTTTTAACTCGTAAACACCAGATCGTGAGATTG
ACCTTCTCATCGACCTGATCAATGCATCCATGCCACCAGAGAGCAATCCC
ATTGAGCTCTACGCGAAATTGACTACAATTTGTCATCAGATGGCTTCCAA
CATGGAAGACCCCGCAGTGGTACTGTATATCCGAAGCAACCTTTTGAACA
TGAAGTTGCTTACCGCGTTGCCAAAATCGTACGAGGCGGAGGTCCGAGCT
CTGCGTGTTGATGCATCGATGGTTACGTTGGACTCTTCGCACGTCAAGAG
ATGCATCTTTGATCGCTTTCAGTTCCTCGAAAGGGCCAAGAAGAAACCCC
GTCATCAGAAAGATCAAGATGAGGCCTACACCACGCATGGTCGAGGTCAA
GGTCGAAGAAAGGACTCCGGAAAAGGTGGAAGAGGAAAACTTGGAAAACG
TGATGACACCAGTGATAGGACGTCCTTAATAGCAGCTACGCCATCTGTCT
CGTCGAATTCCAGTCAAACTGGCTCCCCGAAATTGGCTTCATCCTCTTCA
AGTTCAGCAATAGGAGGAAGGAAGCCTTGCCCGATCTGCCAGAAGACCAC
ACATCACGCCGACAACTGCCCCGACGGGACCTGCGGTAGATGCCATGGTA
AAGGACATGGTCCTTGCGTCTGCGGCACGGGAGCGGCAGCTGTGTGCGAG
GTTGACGATGATTTCGACTCCGACTTTGGGATTCTGGTCATGGATGAACT
GGACGTTAAAGGTACTAGGCTTTCAGCCCATCCAGGCGAGTCGAATCTAG
TGTGCAGTGATGAGAGAGAGTGCATTGAAGCGTGGTACGGTGATAGCGCT
GCCTCACGTCACGTGACGTTCTCGAAGAATGCTCTTTGTGAT
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1065:181724..182665+

>mRNA_D-dichotoma_M_contig1065.603.1 ID=mRNA_D-dichotoma_M_contig1065.603.1|Name=mRNA_D-dichotoma_M_contig1065.603.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1626bp|location=Sequence derived from alignment at D-dichotoma_M_contig1065:181724..182665+ (Dictyota dichotoma ODC1387m male)
ATGCCACCAGAGAGCAATCCCATTGAGCTCTACGCGAAATTGACTACAAT
TTGTCATCAGATGGCTTCCAACATGGAAGACCCCGCAGTGGTACTGTATA
TCCGAAGCAACCTTTTGAACATGAAGTTGCTTACCGCGTTGCCAAAATCG
TACGAGGCGGAGGTCCGAGCTCTGCGTGTTGATGCATCGATGGTTACGTT
GGACTCTTCGCACGTCAAGAGATGCATCTTTGATCGCTTTCAGTTCCTCG
AAAGGGCCAAGAAGAAACCCCGTCATCAGAAAGATCAAGATGAGGCCTAC
ACCACGCATGGTCGAGGTCAAGGTCGAAGAAAGGACTCCGGAAAAGGTGG
AAGAGGAAAACTTGGAAAACGTGATGACACCAGTGATAGGACGTCCTTAA
TAGCAGCTACGCCATCTGTCTCGTCGAATTCCAGTCAAACTGGCTCCCCG
AAATTGGCTTCATCCTCTTCAAGTTCAGCAATAGGAGGAAGGAAGCCTTG
CCCGATCTGCCAGAAGACCACACATCACGCCGACAACTGCCCCGACGGGA
CCTGCGGTAGATGCCATGGTAAAGGACATGGTCCTTGCGTCTGCGGCACG
GGAGCGGCAGCTGTGTGCGAGGTTGACGATGATTTCGACTCCGACTTTGG
GATTCTGGTCATGGATGAACTGGACGTTAAAGGTACTAGGCTTTCAGCCC
ATCCAGGCGAGTCGAATCTAGTGTGCAGTGATGAGAGAGAGTGCATTGAA
GCGTGGTACGGTGATAGCGCTGCCTCACGTCACGTGACGTTCTCGAAGAA
TGCTCTTTGTGATATGCCACCAGAGAGCAATCCCATTGAGCTCTACGCGA
AATTGACTACAATTTGTCATCAGATGGCTTCCAACATGGAAGACCCCGCA
GTGGTACTGTATATCCGAAGCAACCTTTTGAACATGAAGTTGCTTACCGC
GTTGCCAAAATCGTACGAGGCGGAGGTCCGAGCTCTGCGTGTTGATGCAT
CGATGGTTACGTTGGACTCTTCGCACGTCAAGAGATGCATCTTTGATCGC
TTTCAGTTCCTCGAAAGGGCCAAGAAGAAACCCCGTCATCAGAAAGATCA
AGATGAGGCCTACACCACGCATGGTCGAGGTCAAGGTCGAAGAAAGGACT
CCGGAAAAGGTGGAAGAGGAAAACTTGGAAAACGTGATGACACCAGTGAT
AGGACGTCCTTAATAGCAGCTACGCCATCTGTCTCGTCGAATTCCAGTCA
AACTGGCTCCCCGAAATTGGCTTCATCCTCTTCAAGTTCAGCAATAGGAG
GAAGGAAGCCTTGCCCGATCTGCCAGAAGACCACACATCACGCCGACAAC
TGCCCCGACGGGACCTGCGGTAGATGCCATGGTAAAGGACATGGTCCTTG
CGTCTGCGGCACGGGAGCGGCAGCTGTGTGCGAGGTTGACGATGATTTCG
ACTCCGACTTTGGGATTCTGGTCATGGATGAACTGGACGTTAAAGGTACT
AGGCTTTCAGCCCATCCAGGCGAGTCGAATCTAGTGTGCAGTGATGAGAG
AGAGTGCATTGAAGCGTGGTACGGTGATAGCGCTGCCTCACGTCACGTGA
CGTTCTCGAAGAATGCTCTTTGTGAT
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