mRNA_D-dichotoma_M_contig106.562.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig106.562.1
Unique NamemRNA_D-dichotoma_M_contig106.562.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig106.562.1 vs. uniprot
Match: A0A6H5JUE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUE7_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 6.000e-15
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 3 
Query:  423 DIPIWGSLVVYDKPEDASGALTDDEVKGNIVRLVKVANNQQLRRILVPGQELCRPEAALYLGVDVTCPRYHLQW 644
            D+P WG L V++   +A  +L+ DE +   VRL+ VANN QL+R+LVPG+E C P A LYL V  TCP Y+++W
Sbjct:    9 DLPAWGQLEVFNSRPEAFRSLSLDEREDQRVRLLHVANNVQLKRMLVPGKEGCGPGAELYLRVAPTCPLYYMRW 82
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BLAST of mRNA_D-dichotoma_M_contig106.562.1 vs. uniprot
Match: A0A6H5KBS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS8_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 7.980e-15
Identity = 37/74 (50.00%), Postives = 52/74 (70.27%), Query Frame = 3 
Query:  423 DIPIWGSLVVYDKPEDASGALTDDEVKGNIVRLVKVANNQQLRRILVPGQELCRPEAALYLGVDVTCPRYHLQW 644
            D+P WG L V++   +A  +L+ DE +   VRL+ VANN QL+R+LVPG+E+C P A LYL V  TCP Y+++W
Sbjct:    9 DLPAWGQLEVFNSRPEAFRSLSVDEREDQRVRLLHVANNVQLKRMLVPGKEVCGPGAELYLRVAPTCPLYYMRW 82
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BLAST of mRNA_D-dichotoma_M_contig106.562.1 vs. uniprot
Match: A0A6H5LBJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBJ9_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 6.250e-14
Identity = 37/74 (50.00%), Postives = 52/74 (70.27%), Query Frame = 3 
Query:  423 DIPIWGSLVVYDKPEDASGALTDDEVKGNIVRLVKVANNQQLRRILVPGQELCRPEAALYLGVDVTCPRYHLQW 644
            D+P WG L V++   +A  +L+ DE +   VRL+ VANN QL+R+LVPG+E+C P A LYL V  TCP Y+++W
Sbjct:  666 DLPAWGQLEVFNSRPEAFHSLSVDEREDQRVRLLHVANNVQLKRMLVPGKEVCGPGAELYLRVAPTCPLYYMRW 739
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BLAST of mRNA_D-dichotoma_M_contig106.562.1 vs. uniprot
Match: A0A6H5KEK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK0_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 9.540e-13
Identity = 35/74 (47.30%), Postives = 50/74 (67.57%), Query Frame = 3 
Query:  423 DIPIWGSLVVYDKPEDASGALTDDEVKGNIVRLVKVANNQQLRRILVPGQELCRPEAALYLGVDVTCPRYHLQW 644
            D+  WG L V++   +A  +L+ D+ +   VRL+ VANN QL+R+LVPG+E+C P A LYL V  TCP Y+ +W
Sbjct:    9 DLTAWGQLEVFNSRPEAFHSLSVDKRQDQRVRLLHVANNVQLKRMLVPGKEVCGPGAELYLRVAPTCPLYYTRW 82
[Close]
BLAST of mRNA_D-dichotoma_M_contig106.562.1 vs. uniprot
Match: A0A6H5JK41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK41_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 2.210e-5
Identity = 29/73 (39.73%), Postives = 41/73 (56.16%), Query Frame = 3 
Query:  423 DIPIWGSLVVYDKPEDASGALT--DDEVKGNIVRLVKVANNQQLRRILVPGQELCRPEAALYLGVDVTCPRYH 635
            DIP+WG  VVYD    A  +L   +       VRLV+VA+N+ L+++    Q +   EA LYL V  +CP Y+
Sbjct:  976 DIPVWGKTVVYDSHRQALDSLNVGNHSTDLQFVRLVRVADNELLKKMCPKNQVVKHSEAGLYLRVAESCPAYY 1048
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig106.562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JUE7_9PHAE6.000e-1550.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBS8_9PHAE7.980e-1550.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LBJ9_9PHAE6.250e-1450.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEK0_9PHAE9.540e-1347.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JK41_9PHAE2.210e-539.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig106contigD-dichotoma_M_contig106:386640..387529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size654
Cds size468
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig106.562.1prot_D-dichotoma_M_contig106.562.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig106 386825..387529 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927555.396618-UTR-D-dichotoma_M_contig106:386639..3868241622927555.396618-UTR-D-dichotoma_M_contig106:386639..386824Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig106 386640..386824 +
1690798034.1387105-UTR-D-dichotoma_M_contig106:386639..3868241690798034.1387105-UTR-D-dichotoma_M_contig106:386639..386824Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig106 386640..386824 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927555.4078565-CDS-D-dichotoma_M_contig106:386824..3869921622927555.4078565-CDS-D-dichotoma_M_contig106:386824..386992Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig106 386825..386992 +
1690798034.146881-CDS-D-dichotoma_M_contig106:386824..3869921690798034.146881-CDS-D-dichotoma_M_contig106:386824..386992Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig106 386825..386992 +
1622927555.4196706-CDS-D-dichotoma_M_contig106:387229..3875291622927555.4196706-CDS-D-dichotoma_M_contig106:387229..387529Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig106 387230..387529 +
1690798034.1576269-CDS-D-dichotoma_M_contig106:387229..3875291690798034.1576269-CDS-D-dichotoma_M_contig106:387229..387529Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig106 387230..387529 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig106.562.1

>prot_D-dichotoma_M_contig106.562.1 ID=prot_D-dichotoma_M_contig106.562.1|Name=mRNA_D-dichotoma_M_contig106.562.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=156bp
MSQHAVDTELFVGPNRLSAKIVEDITARTIREAVTESGDAVEIMKRVASY
LENTVKQAKLFDFGHELFVICGLGKPKLPDIPIWGSLVVYDKPEDASGAL
TDDEVKGNIVRLVKVANNQQLRRILVPGQELCRPEAALYLGVDVTCPRYH
LQWKDT
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mRNA from alignment at D-dichotoma_M_contig106:386640..387529+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig106.562.1 ID=mRNA_D-dichotoma_M_contig106.562.1|Name=mRNA_D-dichotoma_M_contig106.562.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=890bp|location=Sequence derived from alignment at D-dichotoma_M_contig106:386640..387529+ (Dictyota dichotoma ODC1387m male)
ATGCTCGGATCGCTTTGGACGAAGCTTTCCTGGGTACCTTCAACCAGGCC
ATGTTCAAAGCACGTAGTTATCTTACGTGGGGCTTGCACGAACCACAGCG
TTGACATCGATGTGCCGTGATGCTCTTGGCTTCGTGAAATTGAGCTCATG
TTACCTTCCCCGTATGTGCCCCCTCGGTCGATCCGATGTCGCAGCACGCT
GTTGATACTGAGCTTTTCGTTGGGCCTAATCGTCTGTCCGCCAAAATCGT
GGAAGACATCACCGCGCGGACGATTCGGGAGGCCGTAACCGAAAGCGGTG
ATGCCGTGGAAATCATGAAGCGAGTGGCGAGCTACCTAGAAAACACGGTG
AAGGTGAGGTAATTATTCGTGAGATAAAGCTAGCGCGACTTCGTACTGAT
TCGCTGTATGCAGAATATCCAACCCCTCATGCAAGAACGACATAGTGAGA
CAATACTTCCTCGGGAGTGATATCATCTTGGTATCATTGCAATTTGAGGA
TCGGTCGCATGTACCAAGACAGTTGATATGGAGTCTTGGGCCCATGCGTT
TTCTTGTCTCCGATTGTCGCCACTTTCTCTGCGTTGGCAGCAAGCAAAAC
TCTTCGACTTCGGGCACGAGCTGTTCGTGATTTGCGGTCTGGGGAAGCCC
AAATTACCAGATATTCCCATCTGGGGCAGCCTCGTCGTGTACGACAAGCC
GGAGGATGCCTCGGGTGCTCTCACGGATGATGAGGTAAAGGGAAACATTG
TTCGGCTGGTCAAAGTGGCAAACAACCAGCAGCTCCGGCGAATCCTGGTA
CCCGGGCAAGAGTTGTGCCGCCCTGAGGCGGCACTGTATCTGGGGGTGGA
TGTCACGTGCCCCCGATACCATCTGCAGTGGAAAGACACC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig106:386640..387529+

>mRNA_D-dichotoma_M_contig106.562.1 ID=mRNA_D-dichotoma_M_contig106.562.1|Name=mRNA_D-dichotoma_M_contig106.562.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=936bp|location=Sequence derived from alignment at D-dichotoma_M_contig106:386640..387529+ (Dictyota dichotoma ODC1387m male)
ATGTCGCAGCACGCTGTTGATACTGAGCTTTTCGTTGGGCCTAATCGTCT
GTCCGCCAAAATCGTGGAAGACATCACCGCGCGGACGATTCGGGAGGCCG
TAACCGAAAGCGGTGATGCCGTGGAAATCATGAAGCGAGTGGCGAGCTAC
CTAGAAAACACGGTGAAGATGTCGCAGCACGCTGTTGATACTGAGCTTTT
CGTTGGGCCTAATCGTCTGTCCGCCAAAATCGTGGAAGACATCACCGCGC
GGACGATTCGGGAGGCCGTAACCGAAAGCGGTGATGCCGTGGAAATCATG
AAGCGAGTGGCGAGCTACCTAGAAAACACGGTGAAGCAAGCAAAACTCTT
CGACTTCGGGCACGAGCTGTTCGTGATTTGCGGTCTGGGGAAGCCCAAAT
TACCAGATATTCCCATCTGGGGCAGCCTCGTCGTGTACGACAAGCCGGAG
GATGCCTCGGGTGCTCTCACGGATGATGAGGTAAAGGGAAACATTGTTCG
GCTGGTCAAAGTGGCAAACAACCAGCAGCTCCGGCGAATCCTGGTACCCG
GGCAAGAGTTGTGCCGCCCTGAGGCGGCACTGTATCTGGGGGTGGATGTC
ACGTGCCCCCGATACCATCTGCAGTGGAAAGACACCCAAGCAAAACTCTT
CGACTTCGGGCACGAGCTGTTCGTGATTTGCGGTCTGGGGAAGCCCAAAT
TACCAGATATTCCCATCTGGGGCAGCCTCGTCGTGTACGACAAGCCGGAG
GATGCCTCGGGTGCTCTCACGGATGATGAGGTAAAGGGAAACATTGTTCG
GCTGGTCAAAGTGGCAAACAACCAGCAGCTCCGGCGAATCCTGGTACCCG
GGCAAGAGTTGTGCCGCCCTGAGGCGGCACTGTATCTGGGGGTGGATGTC
ACGTGCCCCCGATACCATCTGCAGTGGAAAGACACC
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