mRNA_D-dichotoma_M_contig106.561.1 (mRNA) Dictyota dichotoma ODC1387m male
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Overview
Homology
BLAST of mRNA_D-dichotoma_M_contig106.561.1 vs. uniprot
Match: D8LNJ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNJ6_ECTSI) HSP 1 Score: 290 bits (743), Expect = 1.020e-86 Identity = 149/221 (67.42%), Postives = 182/221 (82.35%), Query Frame = 3
Query: 345 MAGAMTDSFLRRHQMLSLCFWVTLLFSILYAMAAMDVMGQCYCLPCSSSSPSITSGLGIVTGIAAFVFISQPCYGLYLLRIQCSELVAGMFIGSSSLATLWAFNEAILWRSEAWLAISIAEQASLGENTTGVMNFKALSILAWILFALQLFTTYSTCISRDVLLEVAWGAPSHDYSQLPTQAGVSVVAGNKFSSYQQTMDEEDMEAAANGGEAPTSLAHYL 1007
MAG T+SF+RRHQMLSL FWVTLLFSIL+AMAAMDV GQCY PCS+SSP++TSG+ +VT ++AF+FI+QPCYGLYLLRIQCSELV+G+FIG S+ TL A + + W SE LA +IA++A N++GVM+FKAL+ILAWILFA+QLFTTY C +RDVLLEV+W A HDY+QLPT+AG+ GNKFSSYQQ MD+ED+EAAANG + SLAHYL
Sbjct: 1 MAGTGTESFVRRHQMLSLSFWVTLLFSILFAMAAMDVTGQCYVDPCSTSSPAVTSGMSLVTAMSAFLFIAQPCYGLYLLRIQCSELVSGIFIGCSTFTTLGALGQGVQWGSETSLATAIADEADTDVNSSGVMSFKALAILAWILFAMQLFTTYWCCKARDVLLEVSWSA-GHDYTQLPTRAGLHG-NGNKFSSYQQAMDDEDLEAAANG-DPGASLAHYL 218
BLAST of mRNA_D-dichotoma_M_contig106.561.1 vs. uniprot
Match: A0A6H5KYA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYA0_9PHAE) HSP 1 Score: 189 bits (481), Expect = 6.180e-52 Identity = 99/153 (64.71%), Postives = 121/153 (79.08%), Query Frame = 3
Query: 549 ISQPCYGLYLLRIQCSELVAGMFIGSSSLATLWAFNEAILWRSEAWLAISIAEQASLGENTTGVMNFKALSILAWILFALQLFTTYSTCISRDVLLEVAWGAPSHDYSQLPTQAGVSVVAGNKFSSYQQTMDEEDMEAAANGGEAPTSLAHYL 1007
I PCYGLYLLRIQCSELV+G+FIG S+ TL AF + + W SE LA +IA++A N++GV++FKAL+ILAWILFA+QLFTTY C +RDVLLEV+W A HDY+QLPT+AG+ GNKFSSYQQ MD+ED+EAAANG + SLAHYL
Sbjct: 8 IVVPCYGLYLLRIQCSELVSGIFIGCSTFTTLGAFAQGVQWGSETALATAIADEADTDVNSSGVISFKALAILAWILFAMQLFTTYWCCKARDVLLEVSWSA-GHDYTQLPTRAGLHG-NGNKFSSYQQAMDDEDLEAAANG-DPGASLAHYL 157
BLAST of mRNA_D-dichotoma_M_contig106.561.1 vs. uniprot
Match: A0A6H5KXA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXA2_9PHAE) HSP 1 Score: 104 bits (260), Expect = 2.720e-23 Identity = 51/71 (71.83%), Postives = 62/71 (87.32%), Query Frame = 3
Query: 345 MAGAMTDSFLRRHQMLSLCFWVTLLFSILYAMAAMDVMGQCYCLPCSSSSPSITSGLGIVTGIAAFVFISQ 557
MAGA T+SF+R+HQMLSL FWVTLLFSIL+AMAAMDV GQCY PCS+ SP++T G+ +VT IAAF+FI+Q
Sbjct: 1 MAGAGTESFVRKHQMLSLSFWVTLLFSILFAMAAMDVTGQCYVDPCSTISPAVTGGMSLVTAIAAFLFIAQ 71 The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig106.561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dichotoma_M_contig106.561.1 >prot_D-dichotoma_M_contig106.561.1 ID=prot_D-dichotoma_M_contig106.561.1|Name=mRNA_D-dichotoma_M_contig106.561.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=228bp MRSAGKMAGAMTDSFLRRHQMLSLCFWVTLLFSILYAMAAMDVMGQCYCLback to top mRNA from alignment at D-dichotoma_M_contig106:280637..311030- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-dichotoma_M_contig106.561.1 ID=mRNA_D-dichotoma_M_contig106.561.1|Name=mRNA_D-dichotoma_M_contig106.561.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=30394bp|location=Sequence derived from alignment at D-dichotoma_M_contig106:280637..311030- (Dictyota dichotoma ODC1387m male)back to top Coding sequence (CDS) from alignment at D-dichotoma_M_contig106:280637..311030- >mRNA_D-dichotoma_M_contig106.561.1 ID=mRNA_D-dichotoma_M_contig106.561.1|Name=mRNA_D-dichotoma_M_contig106.561.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1368bp|location=Sequence derived from alignment at D-dichotoma_M_contig106:280637..311030- (Dictyota dichotoma ODC1387m male)back to top |