mRNA_D-dichotoma_M_contig106.559.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig106.559.1
Unique NamemRNA_D-dichotoma_M_contig106.559.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig106.559.1 vs. uniprot
Match: A0A6H5JV12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV12_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 4.940e-29
Identity = 57/97 (58.76%), Postives = 69/97 (71.13%), Query Frame = 3 
Query:  225 INRNGEYGPGWMTLMKSWPDLRDIPDHPRKVIPDHTLHQQRVSIEASGPRISKSCRNVGDICVLPEGATAEGLYASRMQELAESVVDL----PTPPG 503
            INR GEYGPG++T+MKSWPD+RD P HPRK +PD TLHQ R  IE+   RI  +C +      LP+G TA+GLY SRM+ELAESVV+L    P P G
Sbjct:   75 INRQGEYGPGYITVMKSWPDVRDTPSHPRKSLPDATLHQHRHCIESCNARIKNACMHTSS---LPDGMTADGLYNSRMEELAESVVELSRSTPVPFG 168
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig106.559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JV12_9PHAE4.940e-2958.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig106contigD-dichotoma_M_contig106:264962..265659 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size535
Cds size276
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig106.559.1prot_D-dichotoma_M_contig106.559.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig106 265219..265659 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927552.2947671-UTR-D-dichotoma_M_contig106:264961..2652181622927552.2947671-UTR-D-dichotoma_M_contig106:264961..265218Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig106 264962..265218 +
1690798032.211479-UTR-D-dichotoma_M_contig106:264961..2652181690798032.211479-UTR-D-dichotoma_M_contig106:264961..265218Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig106 264962..265218 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927552.3093116-CDS-D-dichotoma_M_contig106:265218..2653691622927552.3093116-CDS-D-dichotoma_M_contig106:265218..265369Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig106 265219..265369 +
1690798032.2215471-CDS-D-dichotoma_M_contig106:265218..2653691690798032.2215471-CDS-D-dichotoma_M_contig106:265218..265369Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig106 265219..265369 +
1622927552.3214126-CDS-D-dichotoma_M_contig106:265534..2656591622927552.3214126-CDS-D-dichotoma_M_contig106:265534..265659Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig106 265535..265659 +
1690798032.231248-CDS-D-dichotoma_M_contig106:265534..2656591690798032.231248-CDS-D-dichotoma_M_contig106:265534..265659Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig106 265535..265659 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig106.559.1

>prot_D-dichotoma_M_contig106.559.1 ID=prot_D-dichotoma_M_contig106.559.1|Name=mRNA_D-dichotoma_M_contig106.559.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=92bp
MTLMKSWPDLRDIPDHPRKVIPDHTLHQQRVSIEASGPRISKSCRNVGDI
CVLPEGATAEGLYASRMQELAESVVDLPTPPGMRESVSVGKV
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mRNA from alignment at D-dichotoma_M_contig106:264962..265659+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig106.559.1 ID=mRNA_D-dichotoma_M_contig106.559.1|Name=mRNA_D-dichotoma_M_contig106.559.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=698bp|location=Sequence derived from alignment at D-dichotoma_M_contig106:264962..265659+ (Dictyota dichotoma ODC1387m male)
CTGCTGTGCGCCCTCCCATTGAAGATGAAAGCAGTCATTTGCTGCTGGTA
AAGCTGTGGAATGAACCTCTCAGACCAAATTGCTTGTCCCTTACAGACGA
ATTTGGTCGTCAAGCTTGAACCGTTCGTGACACTTTCGGTGGTGACGCTC
CATCTGGGCAGACACCACGACATCGCCTTGAGGTTTCATGTTGTTGCGTC
GCTCTTTCTTGTGCTCCATTGCCTATCAATAGGAACGGAGAGTACGGCCC
TGGATGGATGACACTCATGAAGAGTTGGCCTGATCTGCGGGACATACCCG
ATCACCCGCGGAAAGTCATCCCGGACCACACCCTCCATCAGCAACGCGTG
TCCATCGAAGCGTCTGGGCCACGAATTAGCAAATCGTGCCGCAACGTCGG
TGATATTTGTACGGGGCTTGGTCACGCTATTTGCACGTGCGTGCCTGATT
TTTCTGTTTGATTGTTTCTACCCGTCACGCTGGATATTGTGTAAATGTGG
CCTAGCAACAAAGTACACGGCAGCTGAACGTGAACTAAGTCCCGTGTAAA
TATCTGATGGCTTTTCCGTGCAGGTGTATTGCCTGAGGGTGCAACAGCAG
AGGGCCTCTACGCGAGTAGGATGCAGGAGCTGGCGGAGAGTGTCGTGGAC
CTACCAACACCTCCGGGCATGAGGGAGTCTGTATCCGTTGGCAAAGTT
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig106:264962..265659+

>mRNA_D-dichotoma_M_contig106.559.1 ID=mRNA_D-dichotoma_M_contig106.559.1|Name=mRNA_D-dichotoma_M_contig106.559.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=552bp|location=Sequence derived from alignment at D-dichotoma_M_contig106:264962..265659+ (Dictyota dichotoma ODC1387m male)
ATGACACTCATGAAGAGTTGGCCTGATCTGCGGGACATACCCGATCACCC
GCGGAAAGTCATCCCGGACCACACCCTCCATCAGCAACGCGTGTCCATCG
AAGCGTCTGGGCCACGAATTAGCAAATCGTGCCGCAACGTCGGTGATATT
TATGACACTCATGAAGAGTTGGCCTGATCTGCGGGACATACCCGATCACC
CGCGGAAAGTCATCCCGGACCACACCCTCCATCAGCAACGCGTGTCCATC
GAAGCGTCTGGGCCACGAATTAGCAAATCGTGCCGCAACGTCGGTGATAT
TTGTGTATTGCCTGAGGGTGCAACAGCAGAGGGCCTCTACGCGAGTAGGA
TGCAGGAGCTGGCGGAGAGTGTCGTGGACCTACCAACACCTCCGGGCATG
AGGGAGTCTGTATCCGTTGGCAAAGTTGTGTATTGCCTGAGGGTGCAACA
GCAGAGGGCCTCTACGCGAGTAGGATGCAGGAGCTGGCGGAGAGTGTCGT
GGACCTACCAACACCTCCGGGCATGAGGGAGTCTGTATCCGTTGGCAAAG
TT
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