mRNA_D-dichotoma_M_contig106.558.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig106.558.1
Unique NamemRNA_D-dichotoma_M_contig106.558.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig106.558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig106contigD-dichotoma_M_contig106:260392..260816 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size425
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig106.558.1prot_D-dichotoma_M_contig106.558.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig106 260413..260763 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927552.5719874-UTR-D-dichotoma_M_contig106:260391..2604121622927552.5719874-UTR-D-dichotoma_M_contig106:260391..260412Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig106 260392..260412 +
1690798032.329311-UTR-D-dichotoma_M_contig106:260391..2604121690798032.329311-UTR-D-dichotoma_M_contig106:260391..260412Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig106 260392..260412 +
1622927552.5951545-UTR-D-dichotoma_M_contig106:260763..2608161622927552.5951545-UTR-D-dichotoma_M_contig106:260763..260816Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig106 260764..260816 +
1690798032.362652-UTR-D-dichotoma_M_contig106:260763..2608161690798032.362652-UTR-D-dichotoma_M_contig106:260763..260816Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig106 260764..260816 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927552.585468-CDS-D-dichotoma_M_contig106:260412..2607631622927552.585468-CDS-D-dichotoma_M_contig106:260412..260763Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig106 260413..260763 +
1690798032.3500035-CDS-D-dichotoma_M_contig106:260412..2607631690798032.3500035-CDS-D-dichotoma_M_contig106:260412..260763Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig106 260413..260763 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig106.558.1

>prot_D-dichotoma_M_contig106.558.1 ID=prot_D-dichotoma_M_contig106.558.1|Name=mRNA_D-dichotoma_M_contig106.558.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=117bp
MRADAQIVFFVLCSPNMHCSRNRLMPFYSAFRAVDLFCEGLDTPHQLCNA
CLHGFHLRSLRCSRWLLLRFERHIEKISNSTAQTFQHTAREIERSIYSNN
PLAFRMQCKVLFTKSC*
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mRNA from alignment at D-dichotoma_M_contig106:260392..260816+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig106.558.1 ID=mRNA_D-dichotoma_M_contig106.558.1|Name=mRNA_D-dichotoma_M_contig106.558.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=425bp|location=Sequence derived from alignment at D-dichotoma_M_contig106:260392..260816+ (Dictyota dichotoma ODC1387m male)
GCTCCTTTCACTTTGCTTCCCATGAGAGCTGATGCTCAGATTGTCTTCTT
CGTCTTATGTAGCCCTAACATGCACTGTTCCAGAAATCGGTTGATGCCCT
TCTACAGTGCATTCCGTGCTGTTGATCTTTTCTGCGAGGGCTTGGACACT
CCTCATCAGCTGTGTAATGCTTGCCTGCATGGCTTCCATTTGCGAAGCTT
GAGGTGCAGCAGATGGCTCTTGTTGCGTTTCGAGCGACATATTGAGAAAA
TCTCCAACAGCACAGCGCAGACCTTTCAACACACTGCGAGGGAAATAGAG
AGATCCATCTACTCCAATAACCCGCTAGCGTTCAGAATGCAGTGTAAGGT
CTTGTTCACAAAGTCTTGTTGACGAGTACCGTGCCTTTCATTAAGGTGCC
ATCTCAAATCAAACACACAAGATCG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig106:260392..260816+

>mRNA_D-dichotoma_M_contig106.558.1 ID=mRNA_D-dichotoma_M_contig106.558.1|Name=mRNA_D-dichotoma_M_contig106.558.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=702bp|location=Sequence derived from alignment at D-dichotoma_M_contig106:260392..260816+ (Dictyota dichotoma ODC1387m male)
ATGAGAGCTGATGCTCAGATTGTCTTCTTCGTCTTATGTAGCCCTAACAT
GCACTGTTCCAGAAATCGGTTGATGCCCTTCTACAGTGCATTCCGTGCTG
TTGATCTTTTCTGCGAGGGCTTGGACACTCCTCATCAGCTGTGTAATGCT
TGCCTGCATGGCTTCCATTTGCGAAGCTTGAGGTGCAGCAGATGGCTCTT
GTTGCGTTTCGAGCGACATATTGAGAAAATCTCCAACAGCACAGCGCAGA
CCTTTCAACACACTGCGAGGGAAATAGAGAGATCCATCTACTCCAATAAC
CCGCTAGCGTTCAGAATGCAGTGTAAGGTCTTGTTCACAAAGTCTTGTTG
AATGAGAGCTGATGCTCAGATTGTCTTCTTCGTCTTATGTAGCCCTAACA
TGCACTGTTCCAGAAATCGGTTGATGCCCTTCTACAGTGCATTCCGTGCT
GTTGATCTTTTCTGCGAGGGCTTGGACACTCCTCATCAGCTGTGTAATGC
TTGCCTGCATGGCTTCCATTTGCGAAGCTTGAGGTGCAGCAGATGGCTCT
TGTTGCGTTTCGAGCGACATATTGAGAAAATCTCCAACAGCACAGCGCAG
ACCTTTCAACACACTGCGAGGGAAATAGAGAGATCCATCTACTCCAATAA
CCCGCTAGCGTTCAGAATGCAGTGTAAGGTCTTGTTCACAAAGTCTTGTT
GA
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