mRNA_D-dichotoma_M_contig106.557.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig106.557.1
Unique NamemRNA_D-dichotoma_M_contig106.557.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig106.557.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig106contigD-dichotoma_M_contig106:244119..244316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size173
Cds size123
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig106.557.1prot_D-dichotoma_M_contig106.557.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig106 244134..244281 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927552.2115114-UTR-D-dichotoma_M_contig106:244118..2441331622927552.2115114-UTR-D-dichotoma_M_contig106:244118..244133Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig106 244119..244133 +
1690798032.161791-UTR-D-dichotoma_M_contig106:244118..2441331690798032.161791-UTR-D-dichotoma_M_contig106:244118..244133Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig106 244119..244133 +
1622927552.2503872-UTR-D-dichotoma_M_contig106:244281..2443161622927552.2503872-UTR-D-dichotoma_M_contig106:244281..244316Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig106 244282..244316 +
1690798032.1985762-UTR-D-dichotoma_M_contig106:244281..2443161690798032.1985762-UTR-D-dichotoma_M_contig106:244281..244316Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig106 244282..244316 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927552.2243786-CDS-D-dichotoma_M_contig106:244133..2442031622927552.2243786-CDS-D-dichotoma_M_contig106:244133..244203Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig106 244134..244203 +
1690798032.1746871-CDS-D-dichotoma_M_contig106:244133..2442031690798032.1746871-CDS-D-dichotoma_M_contig106:244133..244203Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig106 244134..244203 +
1622927552.2383664-CDS-D-dichotoma_M_contig106:244228..2442811622927552.2383664-CDS-D-dichotoma_M_contig106:244228..244281Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig106 244229..244281 +
1690798032.1867094-CDS-D-dichotoma_M_contig106:244228..2442811690798032.1867094-CDS-D-dichotoma_M_contig106:244228..244281Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig106 244229..244281 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig106.557.1

>prot_D-dichotoma_M_contig106.557.1 ID=prot_D-dichotoma_M_contig106.557.1|Name=mRNA_D-dichotoma_M_contig106.557.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=41bp
MQRNSRHHCTWVFRAVQYSAYSGMTFTKAHDDVLHATTCA*
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mRNA from alignment at D-dichotoma_M_contig106:244119..244316+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig106.557.1 ID=mRNA_D-dichotoma_M_contig106.557.1|Name=mRNA_D-dichotoma_M_contig106.557.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=198bp|location=Sequence derived from alignment at D-dichotoma_M_contig106:244119..244316+ (Dictyota dichotoma ODC1387m male)
AGCAATCAAAGTCGTATGCAGAGAAACTCGAGGCATCACTGTACGTGGGT
GTTCAGAGCCGTTCAATACTCAGCGTACTCGGGTATGAGCCGGAGCGACG
ATCTCGTCGGTGACATTCACGAAGGCTCATGACGATGTTTTACACGCGAC
AACATGTGCGTAGTGATACTGACTTGGTACATCGTTTCCCCCCAAGTC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig106:244119..244316+

>mRNA_D-dichotoma_M_contig106.557.1 ID=mRNA_D-dichotoma_M_contig106.557.1|Name=mRNA_D-dichotoma_M_contig106.557.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=246bp|location=Sequence derived from alignment at D-dichotoma_M_contig106:244119..244316+ (Dictyota dichotoma ODC1387m male)
ATGCAGAGAAACTCGAGGCATCACTGTACGTGGGTGTTCAGAGCCGTTCA
ATACTCAGCGTACTCGGGTAATGCAGAGAAACTCGAGGCATCACTGTACG
TGGGTGTTCAGAGCCGTTCAATACTCAGCGTACTCGGGTATGACATTCAC
GAAGGCTCATGACGATGTTTTACACGCGACAACATGTGCGTAGTGACATT
CACGAAGGCTCATGACGATGTTTTACACGCGACAACATGTGCGTAG
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