mRNA_D-dichotoma_M_contig106.555.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig106.555.1
Unique NamemRNA_D-dichotoma_M_contig106.555.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
[Close]
BLAST of mRNA_D-dichotoma_M_contig106.555.1 vs. uniprot
Match: D8LNJ2_ECTSI (Hlip n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNJ2_ECTSI)

HSP 1 Score: 197 bits (500), Expect = 1.490e-54
Identity = 124/277 (44.77%), Postives = 166/277 (59.93%), Query Frame = 2 
Query:   56 MHLSSTLAVAIALASAMQVSTFAFVSSGTPTMRAIGVVRRKNSCVRPRGSVLGAKKGGELEDIMDEVAGRSEVAQNEGIGSELPDEV--NSAASAVAAPSIKSKRRXXXXXXXXXXXXXXKVEPSWEDIKTKVARSTATRAPTQKAVKADEEEIIVPMHAGAVPLPPGKIAVNPMEGMDAVDVPGKIVLDPQTLVEQQQGLEKIAQQLRRERLDREAEESVAFGFCPKAELFNGRSAMFGITVGLLTEYWTGQSIPQQVETMIQVLGLVPLDYESYF 880
            M LS+++A+ +   S +QVS+FAFV  G             +      GS    + G  L  +          A  EG GS+  +E   +  +SAVA    K KR               KV P  +D+ +++A             ++D+E I++P  AG  P+ PG I  +P+ GMD  D+PGKIVL P+ L EQQ+GLEKIAQQLRRERLD+EAE+++ FGFCP+AEL+NGRSAMFGITVG+LTEYWTGQSIPQQ+ET  Q+LGL+PLDY++YF
Sbjct:    1 MRLSASVALGVGCVSVVQVSSFAFVPLGATPSGCTSCTAHSSQATSGSGSSSRVRPGRLLVALS--------AADGEG-GSDSGEETADDDTSSAVAT---KPKR---------------KVNPELDDLVSEMAG------------RSDDEPIVIPRGAGIAPMAPGPIKPDPIPGMDDDDIPGKIVLPPEVLAEQQKGLEKIAQQLRRERLDKEAEDAITFGFCPRAELWNGRSAMFGITVGMLTEYWTGQSIPQQIETFAQLLGLLPLDYDTYF 238
[Close]
BLAST of mRNA_D-dichotoma_M_contig106.555.1 vs. uniprot
Match: A0A836CEG8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEG8_9STRA)

HSP 1 Score: 129 bits (323), Expect = 7.380e-31
Identity = 70/103 (67.96%), Postives = 83/103 (80.58%), Query Frame = 2 
Query:  575 EGMDAVD-VPGKIVLDPQTLVEQQQGLEKIAQQLRRERLDREAEESVAFGFCPKAELFNGRSAMFGITVGLLTEYWTGQSIPQQVETMIQVLGLVPLDYESYF 880
            EG+ A D VPGKIV+D  TL +QQ  LEK A+QLRR+RLDREAEE+   G+ P AE+ NGR+AMF I VG+LTEYWTGQS+PQQVETM  V+GL+PLDYES F
Sbjct:   65 EGIIADDNVPGKIVVDDATLAQQQIDLEKYARQLRRQRLDREAEEARLLGWTPAAEINNGRAAMFFIVVGILTEYWTGQSMPQQVETMASVMGLLPLDYESMF 167
[Close]
BLAST of mRNA_D-dichotoma_M_contig106.555.1 vs. uniprot
Match: A0A7V5I693_9BACT (Uncharacterized protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V5I693_9BACT)

HSP 1 Score: 88.2 bits (217), Expect = 7.260e-17
Identity = 41/87 (47.13%), Postives = 61/87 (70.11%), Query Frame = 2 
Query:  596 VPGKIVLDPQTLVEQQQGLEKIAQQLRRERLDREAEESVAFGFCPKAELFNGRSAMFGITVGLLTEYWTGQSIPQQVETMIQVLGLV 856
            VPG+  L    L EQ++ L  +A++ +  RL +EAE    FGFC  AE+ NGR+AMF    G+LTEYWTGQ++PQQ+E ++++LG++
Sbjct:   56 VPGRYKLSAVELAEQRRALRAVAERYKAARLAKEAESRRVFGFCRNAEVINGRTAMFFFVTGMLTEYWTGQTMPQQIELLLRILGII 142
[Close]
BLAST of mRNA_D-dichotoma_M_contig106.555.1 vs. uniprot
Match: A0A2V3IG60_9FLOR (Light-harvesting complex-like protein OHP2, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IG60_9FLOR)

HSP 1 Score: 89.0 bits (219), Expect = 7.950e-17
Identity = 44/87 (50.57%), Postives = 64/87 (73.56%), Query Frame = 2 
Query:  596 VPGKIVLDPQTLVEQQQGLEKIAQQLRRERLDREAEESVAFGFCPKAELFNGRSAMFGITVGLLTEYWTGQSIPQQVETMIQVLGLV 856
            VPGKI LD  T+ +Q+  LE+ +++LR++RL+ E E +  FG+ P AE  NGR AMF +  GLLTEYWTG ++P+QVE M++ LG++
Sbjct:   84 VPGKIQLDELTIAKQRTVLEEYSRELRQKRLEEEREAARIFGWVPYAETLNGRLAMFFLVTGLLTEYWTGYTLPEQVELMLRTLGII 170
[Close]
BLAST of mRNA_D-dichotoma_M_contig106.555.1 vs. uniprot
Match: M1V653_CYAM1 (Similar to high light inducible protein n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1V653_CYAM1)

HSP 1 Score: 87.8 bits (216), Expect = 4.760e-16
Identity = 41/87 (47.13%), Postives = 61/87 (70.11%), Query Frame = 2 
Query:  596 VPGKIVLDPQTLVEQQQGLEKIAQQLRRERLDREAEESVAFGFCPKAELFNGRSAMFGITVGLLTEYWTGQSIPQQVETMIQVLGLV 856
            VPG+  L    L EQ++ L  +A++ +  RL +EAE    FGFC  AE+ NGR+AMF    G+LTEYWTGQ++PQQ+E ++++LG++
Sbjct:  119 VPGRYKLSAIELAEQRRALRAVAERYKAARLAKEAESRRVFGFCRNAEVINGRTAMFFFVTGMLTEYWTGQTMPQQIELLLRILGII 205
[Close]
BLAST of mRNA_D-dichotoma_M_contig106.555.1 vs. uniprot
Match: A0A5J4YWB8_PORPP (Light-harvesting complex-like protein OHP2, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YWB8_PORPP)

HSP 1 Score: 86.3 bits (212), Expect = 5.920e-16
Identity = 53/143 (37.06%), Postives = 80/143 (55.94%), Query Frame = 2 
Query:  428 EDIKTKVARSTATRAPTQKAVKADEEEIIVPMHAGAVPLPPGKIAVNPMEGMDAVDVPGKIVLDPQTLVEQQQGLEKIAQQLRRERLDREAEESVAFGFCPKAELFNGRSAMFGITVGLLTEYWTGQSIPQQVETMIQVLGLV 856
            ED+ ++   S   R  T+  + A+ E+       GA  +   K        +     PG   L P  L EQ++ L  ++++ + ER+DRE E+S  FG   +AE+ NGR AMF +  GLLTEYWTG++IP+QVET+ + LGL+
Sbjct:   29 EDVSSRACVSAPRRHTTRLQMAAEVED-------GATEVASSKAKEENNSQLYEGPGPGMRELTPAELAEQKKVLVALSEEWKAERMDREFEQSRLFGLTRRAEILNGRVAMFFLATGLLTEYWTGENIPEQVETLFRTLGLI 164
[Close]
BLAST of mRNA_D-dichotoma_M_contig106.555.1 vs. uniprot
Match: A0A6U3SNU5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SNU5_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 6.330e-16
Identity = 45/92 (48.91%), Postives = 63/92 (68.48%), Query Frame = 2 
Query:  593 DVPGKIVLDPQTLVEQQQGLEKIAQQLRRERLDREAEESVAFGFCPKAELFNGRSAMFGITVGLLTEYWTGQSIPQQVETMIQVLGLVPLDY 868
            DVPGK+VL+   L  Q   L K+ ++ R+ERL +E +E+   G+  +AE +NGR AMF + VGLLTEYWTG +IP Q+E M++V G +  DY
Sbjct:   88 DVPGKVVLNDVQLAAQVTALSKLEEKWRKERLQKEYDEARLLGWTSQAETYNGRFAMFFLVVGLLTEYWTGVTIPGQIEEMLRVGGFIGPDY 179
[Close]
BLAST of mRNA_D-dichotoma_M_contig106.555.1 vs. uniprot
Match: A0A7J7IMA7_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IMA7_9RHOD)

HSP 1 Score: 87.8 bits (216), Expect = 6.930e-16
Identity = 42/94 (44.68%), Postives = 64/94 (68.09%), Query Frame = 2 
Query:  578 GMDAVD-VPGKIVLDPQTLVEQQQGLEKIAQQLRRERLDREAEESVAFGFCPKAELFNGRSAMFGITVGLLTEYWTGQSIPQQVETMIQVLGLV 856
            G D ++  PG+  L    L EQ++ +  +A++ + ER+ REAE    FGFC  AE+ NGR+AMF    G+LTEYWTGQ++PQQ+E ++++LG +
Sbjct:  129 GSDRLERAPGRYKLSAAELAEQRRAIRAVAERYKAERIAREAEARRVFGFCRNAEIINGRTAMFFFATGMLTEYWTGQTMPQQIELLLRILGFL 222
[Close]
BLAST of mRNA_D-dichotoma_M_contig106.555.1 vs. uniprot
Match: A0A7S2P2S9_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P2S9_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.220e-15
Identity = 41/91 (45.05%), Postives = 65/91 (71.43%), Query Frame = 2 
Query:  593 DVPGKIVLDPQTLVEQQQGLEKIAQQLRRERLDREAEESVAFGFCPKAELFNGRSAMFGITVGLLTEYWTGQSIPQQVETMIQVLGLVPLD 865
            +VPGK+V++   L +Q   L ++ ++ R+ER+ +E E+    G+ P+AE++NGR AMF + VGLLTEYWTG +IP Q+E M++V G + +D
Sbjct:   65 NVPGKVVMNEIDLAKQVSALNQLEEKWRKERVYKEYEDKALLGWTPQAEMYNGRFAMFFLVVGLLTEYWTGVTIPGQIEEMLRVGGFIDVD 155
[Close]
BLAST of mRNA_D-dichotoma_M_contig106.555.1 vs. uniprot
Match: A0A7S2MZX0_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MZX0_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.560e-15
Identity = 45/92 (48.91%), Postives = 62/92 (67.39%), Query Frame = 2 
Query:  593 DVPGKIVLDPQTLVEQQQGLEKIAQQLRRERLDREAEESVAFGFCPKAELFNGRSAMFGITVGLLTEYWTGQSIPQQVETMIQVLGLVPLDY 868
            DVPGK+VL+   L  Q   L K+ ++ R+ERL  E +E+   G+  +AE +NGR AMF + VGLLTEYWTG +IP Q+E M++V G +  DY
Sbjct:   87 DVPGKVVLNDVQLAAQVTALSKLEEKWRKERLQTEYDEARLLGWTSQAETYNGRFAMFFLVVGLLTEYWTGVTIPGQIEEMLRVGGFIGPDY 178
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig106.555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNJ2_ECTSI1.490e-5444.77Hlip n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNJ2_EC... [more]
A0A836CEG8_9STRA7.380e-3167.96Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7V5I693_9BACT7.260e-1747.13Uncharacterized protein n=1 Tax=bacterium TaxID=18... [more]
A0A2V3IG60_9FLOR7.950e-1750.57Light-harvesting complex-like protein OHP2, chloro... [more]
M1V653_CYAM14.760e-1647.13Similar to high light inducible protein n=1 Tax=Cy... [more]
A0A5J4YWB8_PORPP5.920e-1637.06Light-harvesting complex-like protein OHP2, chloro... [more]
A0A6U3SNU5_9STRA6.330e-1648.91Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7J7IMA7_9RHOD6.930e-1644.68Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
A0A7S2P2S9_9STRA1.220e-1545.05Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2MZX0_9STRA1.560e-1548.91Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig106contigD-dichotoma_M_contig106:190568..201056 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score202.2
Seed ortholog evalue3.1e-49
Seed eggNOG ortholog2880.D8LNJ2
Preferred nameHLIP
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009314,GO:0009416,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009628,GO:0009642,GO:0016020,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0055035
EggNOG OGs2CXIH@1,2RXUG@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionChlorophyll a/b binding protein domain
Ec32 orthologEc-01_000400.1
Exons4
Model size2187
Cds size831
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig106.555.1prot_D-dichotoma_M_contig106.555.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig106 190623..199755 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927554.8468738-UTR-D-dichotoma_M_contig106:190567..1906221622927554.8468738-UTR-D-dichotoma_M_contig106:190567..190622Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig106 190568..190622 +
1690798033.7494423-UTR-D-dichotoma_M_contig106:190567..1906221690798033.7494423-UTR-D-dichotoma_M_contig106:190567..190622Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig106 190568..190622 +
1622927554.903946-UTR-D-dichotoma_M_contig106:199755..2010561622927554.903946-UTR-D-dichotoma_M_contig106:199755..201056Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig106 199756..201056 +
1690798033.8080246-UTR-D-dichotoma_M_contig106:199755..2010561690798033.8080246-UTR-D-dichotoma_M_contig106:199755..201056Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig106 199756..201056 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927554.860074-CDS-D-dichotoma_M_contig106:190622..1907301622927554.860074-CDS-D-dichotoma_M_contig106:190622..190730Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig106 190623..190730 +
1690798033.7628932-CDS-D-dichotoma_M_contig106:190622..1907301690798033.7628932-CDS-D-dichotoma_M_contig106:190622..190730Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig106 190623..190730 +
1622927554.8701255-CDS-D-dichotoma_M_contig106:191989..1924131622927554.8701255-CDS-D-dichotoma_M_contig106:191989..192413Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig106 191990..192413 +
1690798033.7746985-CDS-D-dichotoma_M_contig106:191989..1924131690798033.7746985-CDS-D-dichotoma_M_contig106:191989..192413Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig106 191990..192413 +
1622927554.8819911-CDS-D-dichotoma_M_contig106:198303..1984691622927554.8819911-CDS-D-dichotoma_M_contig106:198303..198469Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig106 198304..198469 +
1690798033.785558-CDS-D-dichotoma_M_contig106:198303..1984691690798033.785558-CDS-D-dichotoma_M_contig106:198303..198469Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig106 198304..198469 +
1622927554.8936632-CDS-D-dichotoma_M_contig106:199622..1997551622927554.8936632-CDS-D-dichotoma_M_contig106:199622..199755Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig106 199623..199755 +
1690798033.7954714-CDS-D-dichotoma_M_contig106:199622..1997551690798033.7954714-CDS-D-dichotoma_M_contig106:199622..199755Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig106 199623..199755 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig106.555.1

>prot_D-dichotoma_M_contig106.555.1 ID=prot_D-dichotoma_M_contig106.555.1|Name=mRNA_D-dichotoma_M_contig106.555.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=277bp
MHLSSTLAVAIALASAMQVSTFAFVSSGTPTMRAIGVVRRKNSCVRPRGS
VLGAKKGGELEDIMDEVAGRSEVAQNEGIGSELPDEVNSAASAVAAPSIK
SKRRSSELDDIMSEVAARKVEPSWEDIKTKVARSTATRAPTQKAVKADEE
EIIVPMHAGAVPLPPGKIAVNPMEGMDAVDVPGKIVLDPQTLVEQQQGLE
KIAQQLRRERLDREAEESVAFGFCPKAELFNGRSAMFGITVGLLTEYWTG
QSIPQQVETMIQVLGLVPLDYESYFS*
back to top

mRNA from alignment at D-dichotoma_M_contig106:190568..201056+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig106.555.1 ID=mRNA_D-dichotoma_M_contig106.555.1|Name=mRNA_D-dichotoma_M_contig106.555.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=10489bp|location=Sequence derived from alignment at D-dichotoma_M_contig106:190568..201056+ (Dictyota dichotoma ODC1387m male)
CCTCGACAGTGTATGCTGCACTGTGAGGCAAAGGGAGCAGTCAGCTAGAA
GAACCATGCATCTTTCATCAACTTTAGCTGTGGCAATAGCCCTTGCATCG
GCAATGCAGGTGTCGACGTTCGCCTTCGTTTCATCAGGAACCCCAACGAT
GCGTGCTATTGGGGTGAGAAGAAGTAGAACCATGCGCGACAGAGCAAGAT
TCACAACCCTGGGTCCACGCGCCGATGCTAGAAGTGTCACTCTGAGACTC
GCCGATGGGATGAATATCTACAACTGTAGTTGATCGCATTGCAACGATTC
ATGTGTTTCAATGATCCATGTTTCGGAGACAAACGTTGCGCTTGATCATA
GGAGAACGGCCACCTGAAGATTAGCTGAGGTAGTTCAATGTTCATGTCAC
CAGCGCTGCATGTTTAGTCAAGTGTACCACCTCATTTTTCACCATTTCTA
GCATGCCTTTCGTAGGTGTCCAAGCGAGAAAACTTGCGTGGAATTGGTCT
CGGTTACCCTGAAGCACCCAGTTTCGAGGAACTGTTTGTGGTTTACACTG
CTAATGTTTGGATGGCCTCGCGCACGGAGACCTTGACTCTGTCTCTGTGC
TGTCAACCTTTGTGCTCAGCAGTCACTCCTGTGCGCTGTCGTACGCTGGA
CAAGACTTTCCCGCTCTTCGTTCTCTTCGTCGCATTTCATGGTAGAGCTG
TCTGTTGCCATATACCTCTATTATCCGATTTGTAAAAGGCTCCATCGTTA
CCTTAAGAGACTTTTGAAGCTGTTGTGTTGCTGCACTTCGCGATCGATAA
GTCGCGTTCCTCAAGCCCCGTGCATATCTGACGTTGCTCGACGTATCGCC
TCACTGACCAAGAGTCAGTCTTGACCCACACACTCACGCCGGCAGCATTA
CCATCGATAAACTCTAAGAGAGCGAGCTGATGGCTGGTTCCTGCCAAGCT
AACATAGTACATTGTTCTGTCGCACAGCGTTATGTATATCATAGGTATTG
ACTCTCTCATGATCAACCCCCACAAAAAAAAAAACCTTCGACCTATCTGT
GAGACGATGTCCTTCATCTTCCAGGCAGGTACTGCTGATACATCGGACAG
ATGCAGTGCAGAAGTACCCAGAATTCTGCAATGCCGGGACACTCATGATC
CTTACTTCAAGACGTCTACCCCGGACTGGACTGATGAAATGTATTTGAAA
ATTGGAGGGTCGCCACAAGACGCGTCTAGACTAGGAAGAAATCTTCGAAC
TAACTCGCTTGAGGCGACTCGCTTGCCCAGCCGAAGGGTAGAAGTGATGC
TCCATCTCTTGTCTCGATCTTCAATGGGTACCTGGCTCACTGACGCAACT
GCGTTGGTTGCGTTCGATACTGTTATGTTCTTGGGGCTCCCGTGCGGGTC
TTTATTTTATTTTTTTGCGCAGGTCGTGAGGCGTAAAAACTCATGCGTTC
GGCCACGGGGATCAGTCCTAGGAGCGAAGAAGGGTGGCGAGCTCGAAGAC
ATCATGGATGAGGTCGCAGGTCGGAGCGAAGTTGCGCAGAACGAAGGGAT
TGGTAGCGAGCTGCCTGACGAAGTCAACAGCGCGGCGAGTGCCGTGGCTG
CTCCCTCGATAAAATCCAAGCGCAGGTCGTCTGAGTTGGACGACATCATG
AGCGAGGTGGCCGCGAGGAAAGTGGAGCCAAGTTGGGAGGACATCAAAAC
CAAGGTGGCGCGTTCGACGGCGACCAGGGCGCCGACGCAGAAGGCGGTGA
AGGCAGACGAAGAGGAGATAATCGTACCCATGCACGCCGGGGCTGTACCA
TTGCCTCCCGGCAAGATCGCCGTGAATCCCATGGAAGGGATGGACGGTGA
GTACGAGCTGAGATACCCGCTAGAGACTGCTCCTCGGAGGCGGGCGAGGA
GCGCGAAACGGCCGTGTGACGATCGATCAAAAGGGACGCTCGCGACGAGA
CGGTTCGCTCGATTTCCTGTTTGCTTGTTGATCTTTTCCATGAATTAAGC
GGGTATGCTCGGCGACGAAAGAGGTGGTATCCTCGAGCTTGTTGCAGAAG
TCGTAAGAGAGGGCCACGCAACTCGTGGGCTCGGCTTGTGGGGTGCGGGC
AATATGACAATGTTCCACCACCCCCGTCTTGACGCACATGCATGTCAAGT
CGGCAGGCACCACGAGATACGCCGCTCGTATCGCGTGGACAACCCGCGAA
TGTCGATTCCATCATGGTGGGTGTTTCATGCAACGAGCTTCCAACGTTTC
GGTTTTGGGCTTTTCGATAATCGTAAGCGTCGAACGGCGAGAAATCCTGG
TCATGGCACGCATGTGAAGGAAGCATCTGAACGCCCGCGTATTATGACAG
GGGTTTCCATCAGTATGGATGGCACGGGAAGCATTCATCTCGGATTTTGC
TGTCTAGGCCAATTGTTATAGCGGTTCAAAATCCCGGCCAGTTATAGCTT
TCAATTTCATTGATTTTAGAGCCGCAGTCGCACCGATTTTTCAGAATTCG
AACCAAATACCTTGGACGCTTCTACCAGCTAGCCTTCTACCTGGATAGGC
ACCCGAAGATGAAGCGAGACACTTGCCTAATTAAGAAAGACAAATATTTG
CTCTACCCGAGATCGGGCCTTGAAATTGGGAATCGGCCCCGATTCTGTGC
GGTGTTTCCCCAAATTCTCCAATTTTTGGGGCGAAGACCGCACAGAATCG
GGGCCAACCGCGATTTCAACGCTCGGTCTCCGATGAACAAGTAACTAATA
GTATGCCGGGATGATTTTGGGGGGGCGGCCCTATAACAACCGGACGAAGA
GCGTGCCGCATCGCGTAAATAAACTTTCTTTGGGAGGGGGTGGGAGTCAA
GTGTATGATAGTTTATATCGCTCGTTGAAGTAGGAGATTTGTATTCGTTA
ACGCCGAAGACGACCGGGTTGGGTTGAGTTAGATCCTCTTACAGCAATCC
AACGAAATCGTGACAAAATTTATGGTTGACTGGATTCATACTAGATCCAA
GTTAAATTTCTCTATCATCCATTTTCTTACGATTTTTACTGTAAAATCGA
GAGAAAAAGAACAATTCAGGCGTTGAACCCTTTAGATGCTCTTGTTGGGT
TAGGGTTATAGTCCGTATGAGTACCAAGGTAGAACCCCCAACTCAGGGTT
TTGTGAATATCTTCTCCAGGAGGGGGAAGATTACATCTGCCCCAGGTTCG
GTAGGCCGTCCCTAGGTCCTGGCTCCGAACTGAATGATCCCTCGCTGTGG
TCCTGATGCGATGCCACCGTTGGTCCCAAGACTGCACGTTTTGTATCCCG
ACTGCGCGGATCGGGAAGGCTTTTCCTCTCTTAGGAGTGGGAGGAAGAAG
GATATCAGGGGATCCTTGAGTGTAGTGTCAAGAGGAAGTCAGGGCTCAGC
TGAGACTGAGGCCAGACGGGATGGTGAGAGTGAGAAGTGAGAGAGGAGGG
GCGTAGGCTCGTGGCTTTCCTCTTCCTTCATCACAGGTCCACATCAGATC
CCCTTCTGAGTTGATCTGAGATCTTCCGAGAAGATCTGGTCAGCTAACTT
CCTCATTGCAGGACGAGCTGATGTCTGGCATCGTACGTGGTCATAGTAAT
ACCCCGTAGATGCAGCCTGACGTTCTACCAATGGCTGGTATGTGTCACTA
TTGTTCTGGATTAAAGATCGTAAAGACGAGAAGACGGGGCTAGGCTAGGC
TAGGCTAGGCTAGGCTAGGCTGGCTTCCTTTCCCACAGGACGGTATCCAT
AGTTTGAAGGGTTGAAGGCAGTATCGTAGGTAGACCATCGTTACGGGTAC
GCGATGGGTTGGGTCATGACACCGTTCCACCCATCCTATCCTACCGGTAG
ATTTTCGATCTCCATGTCGTGGTGAGGTCTGGAACTTGCGGGGAAACAGC
TCTGCTTGATGAGTGCGCTCGATATCCAGGAAGAAAGCGCCTTCGGGTAC
GCGGTCGAGCTCATCAACGTGATACACACATCGTCACGTGTACATCTGAA
CCGGGACATGGTTTGGTGAAAGCAGAAGCGACTTGAGGCCTGCGTTCGTG
GAGACAGGGCAGCGTCTTCCTGGACTAGCTTGGAAGCCATTGCTGCCCTT
GTCACCCCCCTCTCATACCCGTGCGGACGCTGCAGCCCTCGGCGTTGCCA
ACCCTCGTATCCCCGTGCGAATGTTCGGACGTGGTGCATTCGAAAACTCG
GCCCTGCTGTAAATATGTGTTCTACTCGCATTCCCATTGGCTGGTGAGCA
ACTTGATGACGTGAGGCACCCCAAACCGTTGGACCGGAGGTTGGCGGCGA
AGGAGACGAGGCATAATTTGTTGCCATTCATTGCGACTGGCTCAATGAAT
GGTGGACCCAACCAAATCTGACGCTCATCTAGAGCAAGGGGGAGCGTTTT
AAAAATGGCTCTTTACTTGGTAACACACTAAATCCAAGTAAAACATGCGT
ACCACTGTAACTGCGCTCAGCGATTTGTTGTTGTTGTTGCTGTGGTGGTT
GCCGCACTGCTTGTCATCCGAGCCTCAAGGAGAGGAGGAGGTTCTCGGTG
TGCCGAGTGCCGCGTGTAGTTGACGGGATGTGCAGAACGAACCGCTTTCC
ATACCGTAGCAAAATGGATATCTGGTTGACGGTATACTAAATCTAGGTCA
ATGTATCCAAGGTTTGTTTATTTTGGTAGGATTTGAAATCGTGTTCGTGG
CAAAAAAACCCGGGAGATTCGACGGGCTCCGTAGTAAATTCAAGTAAATT
GAGACCGATTCTTCGTTTCGGATGATCTTGTTGCAATGCAATCAGCGAAT
AAGCTCCGTGGATTATTCGCTGATTCCAACGAAAGGTAATCCCAGGGATT
CAAATCACCATGGTGCTGTTTCAAACTTGTGCAACGCCTGAAGCAACAGA
CCTCAAGGAGTGCATTTCCCTGCGGTAGCAAGCCAAGCGAGTGTTGCGTT
AGTTCGTCCAAGACGGCGCTGGTCCCCCGCAAGCAAGCGATCAAGGTTCT
CTACGTGATAAATCATCGCGAATTGGCCGAAGCATGAATATACCATGTGA
CAATAGATCCCATGGCCCGTGATCCTTAACCCAGCCAGGTGAAACGCCGT
GAGGCAGGGCTCGAGAGCCAGGTCAGGTCAGGGCCAGCTTGATCGAACAC
GTGAAATCCGCCGTTCTAACCGGGTTACTGACGCGGATGGACCGGCGGTG
GACAGACACAGTTGCGGACTGACGGAACATGCCCGGAGAACAAAAGATCG
GACGCTGAAGAGATCGGTTCGGTGCGCACGAGTCAACAACGTTGTCCTGA
AGTTACCCTCATTGGCTGACTGTGAACCAATCGGCTGAATGCCAAGAATA
GGAAGTAGCACCGTTGGTGCAAACATGAACGTGTACATGACGCTCGATAA
TGTTGGGTTCGAAGGCTTGGGGTACTGTTAAGAGTCGTGGAGTATTGTGA
TATGACGAGAGCATGCGGGTTGGACTTGGTTCGGAGAGGACGCAAAATAT
CGCATGCGAGTCGAGACCTTGGCGAGTGTGTTGGAATCATACACGGAGGA
CAGACCCGGCTCGATATCAGACAGCCCCTAACACATACATCACTGCGGTG
GCAACACATCTACAATACTGCGATGCCTATCCTGTCGTTCCAGTTGAGAC
ATCAACCGATTGGATACACTCATCTAAAGCGTCGCTCCCACGGGATGACC
ATCGACTCATGTCATAGCTAGGTACCACATCCTGTGTTTGTGTGTGTATG
TGTGTTTTGCATTAGTCACATAAAACCACGCTGAGACCCGGCGTTGGTTG
AGATAACACGCCCAATAATCGTCCAGGAGGTAGCATCATATCCGAGGGAC
CCGTAGATTACACCACATGCAATACGACCGTCTCCAATGTAGCATCTCCA
GAGCCCTACTCATGCTGGTTATCGGCAACAGACGTGTCCGTGTGTGTGTG
TGTTGTATTAGTCACATAAAACCAGGCTGTGACCCGGCTCTGCAGTAGAC
CTTCCCGAACGGTGTCTGCACTACAGCTTCGGCATACGTAGCAGACGGCT
ACCTCTATACCTGTCTACAGTCTTCAGCACACTGGAGATCTCCATATATA
GGAAACCCACACCGCCGGGGTGGACGAAATACTCTTCTCATGGCTAGTAC
CTCATCTAGGTCCCTAGGGGTGTGTGTGTATGTGTTGTATTACTCACATA
TAACCAGGCTGTGACCCGGCGCTGTGTCGGACGGTCCCAGCACGTAATGT
GTGTGTATGTGTGTGTGGTATTAATCACATAAAACCAGGCTGTGACCCGG
CGCTGTATCGGACGGTCCCAGCACATAGGTACCCCTAGTGGGGAACTTCC
TGAGAACGTTGCTACTCCTCCACTATCACACCGCCGACTGAAAGAGTGTG
TATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCACATAAGTCACATA
TATCCACGCTGTGACCCGACGTAGGTTCCGACAACACGCCCAGCAACCGT
CCCGGAGGTAGCATCAGATCCAGAGGATACTCAGACTACCCCACGTATAA
AACGCCCGTCTCCGAAGTATCTGTGTTTGTGTGTGTCTTGAATCGGTCAA
AACAAAACTGCGCCATGGCCAGCTCGTTGTCGCCGATACCTCATTCCGAG
TCTTGCTATTCCAATTGTCCTTCAAGTGCATCTGTCTGTCTGTATTACAT
GATTCACGTGCAACCACACCGCGAGTCGCCTTTGATCGGCAACTTTTCTT
CCAATTCTTCGGTCTTACTCCACCTTCTCTCGTAAGATGCTTGATCCTCA
ATTGTCTGTTCCCGTCGACGCTCTTGATTCTGTGGTTGGCTACCCCGAAG
AAACTCACAAATGTGCATGCCTCGGTCAATCAACTCCACCCGGCCCGGTT
CGCCAAAAGATTGCCTCGGTCATCTATCCTTCGGTAAACTCTCCTCCCGT
CCATCATGTCTGTTTGTTTCTGCGTGTCTATTTCTTTCTTTGTTTCTCTG
TCTGTGCCGGTATGTGCGCGCTTGCGTGTGTGACTTCGGCGTCCTGTACC
CGGCGATGTAGACAGATCCAGTCGGTACGCCTGGGACCTGGTGACGTTGT
CATTCCGCATCATCTCGTATCAATGTAGGCACAGTACAGTGGTAACGAGG
TCGAAGCAAAGTTAGACATAAGAGAAAGGGAGAGAGAGAGGGACATGAAA
TGGATGTGAACACAAATTCCGTGGGTAACCAGGGTTCCCCGCGTGTGTGT
CATTCAAGCATGTTCGTAGCGGCGCCTGAAATGCACCCGGTGTACCGGTT
CTATCTTTTTTTCCCTTGGGGAAATGTTTGCGAGCTGACTCGGGGAGGAG
GAGGAAGAGTAGGTAGGGCTTTGCATTCGAGATACAGTACTCTAGATACA
GTACTACGGTACAGTACTACGGTACAGTACAGTACAGTACTATCAATGAA
AACAATCGGACTCTTTTAGCGGCTACACACAAAATCCCACTCAAAACATT
AAAGAGCCAGATTTTTATAATTTGTAGTAGTGTGTATCAAATTCGTTATT
GGCCTTGTTTGTCTGAAGAGTACGATCTCCAATACATGTTTCACGTTGTT
GATCACCGATATGTTCGAATGCATCTCCGAGGAGACGTGATGTATGCCAC
GTCCGTCTTGGTTATCGCCGCCCCTGTCACTGCGAAATTGATCCCTCGGC
TTCCTCTCATGAGATCCCCTCCCGCCTCCCTCGCAGCGGTCGACGTCCCA
GGCAAGATCGTCCTGGATCCCCAGACGCTGGTGGAACAGCAACAGGGGCT
CGAGAAGATAGCCCAGCAACTGCGACGCGAGCGACTCGACAGGGAAGCGG
AAGAAAGCGTTGCCTTCGGCTTCTGTCCGAAGGCCGAGCTGTTTAACGGC
AGGTGAGACTGATCGATCGATCGATCGATCGATCAACCCTTCCACCGTTT
GTTCGCCTTCCGCAGGAGCGAGCGCGTCGAGGCGCGAGCGAGGGTTTCCT
AACTATTTCGCTTCGACGCGACCGGGACGGGCCGGGACGATGGGCTGGCT
CGCCGAATCGCGTGATGCCGCCGAAAGTGACGATATCTGCCTCAGGGTGT
CTCCAAGTGTTCTCGAGGGGAACTGAAATTGCTCCCATCAGTCGGAGCGC
CCCGTGGGTGCTGCTCCAAGATGTTGCATGCATCGTCGTGAAGCACGTAG
CATGCGCCGCCCTAGCGTGAATAAGAGTCGACGCGGTGCCCGCACTCGAC
TACAGTGCTTGGAACTGTACAGAAGAAGATTACTGTGTTTGCGAAAATTG
TAAATATAGTTTTTAATTTATCGTTACCAGAAACCGACGACAACAGAAAC
TAGGTTCGGCGCAATCCAATCGAAGAAGATTTAAAACTGTAGAGTTTTTT
GTAAATGAGTTTAATTTATCGCTAACTTTCACCCGGGTTGTTCCTTTACC
GGCCGCACCACGAAAAATTATGAGACTTTTGGAGGATTTCTGTCAAGATC
CCCGAAGTTAACCAACAAACTCTGCAAGTTTATGAAACTCTCTCGGTAAA
GAGTGCGGCGGGATTAGGTCGTTGAGCCGGCGATCATGCCGAATGCCCGG
AAAGAGACTCTAGTTGGCTGTTCTAAAGCTTAACTCGGACATCGCCAAAT
CTAGTGTCCGTTGTCACCGGTTTCTGTTAACGATAAATGAAAATATAGTA
ACAGATTCCGCAAACACGCTATTCGTTTTTTGCTTGTTTCCAGTACTGTA
CTGCACTGCACTGTACTGTACATGGTCTACCAAAATAGTTGGAACTTTAA
AGAATGAATCTTCGGGAGCCTACTACTTCCATTTTGTATGGAGATGAAGG
AATATTATTTGTTTTCACAGTCACGAACACTGTACTGTAGCTTAGCTTAG
CTTAGCTTAGATCTCTTTTGCTGACCTCTATGCCCTACCGGTGGGAGCGT
ACTGTAGCTGTCGTCGAGGTTGGAGGTTTGTGATCTTGACTTTTAGTCAT
GGTTTGTTTCGGCCCTCGCTGCCTGTCCCCCCCCCCCCCATGGCGGTCGT
TCCAGGAGTGCGATGTTCGGGATCACCGTGGGGTTGCTGACGGAGTATTG
GACGGGGCAGAGCATTCCTCAGCAGGTCGAAACCATGATCCAGGTCCTCG
GCCTGGTGCCCTTAGATTACGAATCGTACTTCTCGTGAGTCGGTGTCTCG
GGACCACCTGCGCCGTCACGAGGGTTCCTGGAGGCTGGCTGCGAAGGGGG
GGGGTTACTGGCTATCAAGGCAGCTAAGGTCGGTCCTGCACAAGCACGGC
AGTTAGATCGGTGGAGACTAGACGACGCCACCCAAGTGGCTGAAACTCCT
CTGGAGGGGCAGCGCTCAGCTCGAGTAGTTTGGCTTGGCTCGGCGGGACA
CGGTACGGCACTACACACCACGGACTGGGCGGAAAGCACCCTTCTTTATT
TGGAATCATTGACTCGAGTGTACCTTTTCAAATGCTCTGCTCAGGGGGTT
GTCCGGTGGGGAATGCCTCTGTCGAGCCACGAGTCGTTTGGATGAATTGA
ACTCATGCCAGCGTAGGTACTGTAGCTGCAGTAGCGCGAACAATAGAGTG
AGTTGCCTGCGGAGCGGAAGTTGTCTGGGTGGAGAAAGGTGATGCCGCGA
TGGACGGGGTAGGCCGTGGACGTGTAGATAAAAGCACCACGCTACATGAG
TACCGGCGTAGCTTGTGTTTGCTGCAAACCTTCGGTTGCGATGATTGTGA
TCGACGGCGCTCGGGGAATGGTTAATGCGAGACCTTTGATTCAAAGCAAG
TACGTCCCCGGGGGATTGCATCAGGGGAGGAACGAGGCACCTGGTACCAC
ACTCGTTCTTGTGTTGTGTTGTCTTGTCTTGTCCTGCCGTACCTCCTTGC
TTGGTGTCTGTCTGCCGAGGATGCTTTCGGATGGCGGATTTGCCGTCTCG
ACGCGCCACGCGTTGCACAATTGTGCGGTGCCGTCTCGACCGTTTTGAGG
GTTATTGAATCACTCGGCGTATCTCACGACAGGATCACTTGATGGGATTA
TGTCCGTGCCGTGCTTGGCACAAGTACGCTTTCGCTCATACGGCGGCTGC
GAGAAGTGTGAGAGACGGATGATTTTCGGCGCTGTCTTTGCTACCGCCGG
GTCAGCACAGTACCGACCGACAACGGCACCTGTTTCAACTGTAACAAAAT
GGATCTTATTTTGGCTTGATTGTAAATCCGAGTAAATACGGTGGGGGGAG
CAATTAAAAAGTGGCTCTTGGCGTGGTCACACACTTAAGTCCAATGAAGA
AGGGCGTAGAGCCATTTCATAATTGCTCCCCCTAATGTAGAGCCAAGGTT
CACGTAATCCAGCATCGCTGCGACTGTCTGTACTGAGGTGCTGTCAATCC
ATTCGATGCCACGGAGGCCGATGACGGTGAATTAATGCAAGCGCGGTGCA
ACTCCCTGGAACTACAGCTGGTTTACATGGATGGATTAC
back to top

Coding sequence (CDS) from alignment at D-dichotoma_M_contig106:190568..201056+

>mRNA_D-dichotoma_M_contig106.555.1 ID=mRNA_D-dichotoma_M_contig106.555.1|Name=mRNA_D-dichotoma_M_contig106.555.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1662bp|location=Sequence derived from alignment at D-dichotoma_M_contig106:190568..201056+ (Dictyota dichotoma ODC1387m male)
ATGCATCTTTCATCAACTTTAGCTGTGGCAATAGCCCTTGCATCGGCAAT
GCAGGTGTCGACGTTCGCCTTCGTTTCATCAGGAACCCCAACGATGCGTG
CTATTGGGATGCATCTTTCATCAACTTTAGCTGTGGCAATAGCCCTTGCA
TCGGCAATGCAGGTGTCGACGTTCGCCTTCGTTTCATCAGGAACCCCAAC
GATGCGTGCTATTGGGGTCGTGAGGCGTAAAAACTCATGCGTTCGGCCAC
GGGGATCAGTCCTAGGAGCGAAGAAGGGTGGCGAGCTCGAAGACATCATG
GATGAGGTCGCAGGTCGGAGCGAAGTTGCGCAGAACGAAGGGATTGGTAG
CGAGCTGCCTGACGAAGTCAACAGCGCGGCGAGTGCCGTGGCTGCTCCCT
CGATAAAATCCAAGCGCAGGTCGTCTGAGTTGGACGACATCATGAGCGAG
GTGGCCGCGAGGAAAGTGGAGCCAAGTTGGGAGGACATCAAAACCAAGGT
GGCGCGTTCGACGGCGACCAGGGCGCCGACGCAGAAGGCGGTGAAGGCAG
ACGAAGAGGAGATAATCGTACCCATGCACGCCGGGGCTGTACCATTGCCT
CCCGGCAAGATCGCCGTGAATCCCATGGAAGGGATGGACGGTCGTGAGGC
GTAAAAACTCATGCGTTCGGCCACGGGGATCAGTCCTAGGAGCGAAGAAG
GGTGGCGAGCTCGAAGACATCATGGATGAGGTCGCAGGTCGGAGCGAAGT
TGCGCAGAACGAAGGGATTGGTAGCGAGCTGCCTGACGAAGTCAACAGCG
CGGCGAGTGCCGTGGCTGCTCCCTCGATAAAATCCAAGCGCAGGTCGTCT
GAGTTGGACGACATCATGAGCGAGGTGGCCGCGAGGAAAGTGGAGCCAAG
TTGGGAGGACATCAAAACCAAGGTGGCGCGTTCGACGGCGACCAGGGCGC
CGACGCAGAAGGCGGTGAAGGCAGACGAAGAGGAGATAATCGTACCCATG
CACGCCGGGGCTGTACCATTGCCTCCCGGCAAGATCGCCGTGAATCCCAT
GGAAGGGATGGACGCGGTCGACGTCCCAGGCAAGATCGTCCTGGATCCCC
AGACGCTGGTGGAACAGCAACAGGGGCTCGAGAAGATAGCCCAGCAACTG
CGACGCGAGCGACTCGACAGGGAAGCGGAAGAAAGCGTTGCCTTCGGCTT
CTGTCCGAAGGCCGAGCTGTTTAACGGCAGCGGTCGACGTCCCAGGCAAG
ATCGTCCTGGATCCCCAGACGCTGGTGGAACAGCAACAGGGGCTCGAGAA
GATAGCCCAGCAACTGCGACGCGAGCGACTCGACAGGGAAGCGGAAGAAA
GCGTTGCCTTCGGCTTCTGTCCGAAGGCCGAGCTGTTTAACGGCAGGAGT
GCGATGTTCGGGATCACCGTGGGGTTGCTGACGGAGTATTGGACGGGGCA
GAGCATTCCTCAGCAGGTCGAAACCATGATCCAGGTCCTCGGCCTGGTGC
CCTTAGATTACGAATCGTACTTCTCGTGAGAGTGCGATGTTCGGGATCAC
CGTGGGGTTGCTGACGGAGTATTGGACGGGGCAGAGCATTCCTCAGCAGG
TCGAAACCATGATCCAGGTCCTCGGCCTGGTGCCCTTAGATTACGAATCG
TACTTCTCGTGA
back to top