mRNA_D-dichotoma_M_contig106.553.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig106.553.1
Unique NamemRNA_D-dichotoma_M_contig106.553.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig106.553.1 vs. uniprot
Match: A0A6H5JIY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIY6_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 8.410e-25
Identity = 71/151 (47.02%), Postives = 89/151 (58.94%), Query Frame = 2 
Query:  272 IMEHQSP-PRLLVRERSRSPVRGDFPPVCAGEAPSPLRETSFRVLDADCVNPSTPTSCKFSPHPDDEMTPGGTIKAEGYCAAIRTVGYTTVGGKSFMSGRCPTCRKMVKSADQVCTPNATPPPSPWRTAISSPLRSLSRSPRR---SPKTG 712
            +ME   P P+L +RE S     GD  P      PSPLR   FR L  +      PTSCK+    DD+      +    +CA +RTVGY+TVGGK FMSG+CP C + VKS +QVCTPNATPP SPW+  +++ L+S  RSP R   SPK G
Sbjct:    3 VMERAMPLPKLHLREGSSPSRAGDRSPRSQRRVPSPLRNAKFRPLAMEYAEVPQPTSCKYFNGVDDDEE----VTQSEFCAHVRTVGYSTVGGKPFMSGKCPHCHRYVKSDNQVCTPNATPPQSPWKKTLNN-LQSPLRSPLRTGSSPKDG 148
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BLAST of mRNA_D-dichotoma_M_contig106.553.1 vs. uniprot
Match: D7FQS9_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQS9_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 1.010e-24
Identity = 70/152 (46.05%), Postives = 89/152 (58.55%), Query Frame = 2 
Query:  272 IMEHQSP-PRLLVRERSRSPVRGDFPPVCAGEAPSPLRETSFRVLDADCVNPSTPTSCKFSPHPDDEMTPGGTIKAEGYCAAIRTVGYTTVGGKSFMSGRCPTCRKMVKSADQVCTPNATPPPSPWRTAISSPLRSLSRSPRR---SPKTGG 715
            +ME   P P+L +RE S     G   P      PSPLR   FR L  +      P+SCK+    DD+      +    +CA +RTVGY+TVGGK FMSG+CP C + VKS +QVCTPNATPP SPW+  +++ L+S  RSP R   SPK GG
Sbjct:   52 VMERAMPLPKLHLREGSSPSRAGGRSPRSQRRVPSPLRNAQFRPLAMEYAEVPQPSSCKYFNGADDDEE----VTQSEFCAHVRTVGYSTVGGKPFMSGKCPHCHRYVKSDNQVCTPNATPPQSPWKKTLNN-LQSPLRSPLRTGSSPKDGG 198
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig106.553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JIY6_9PHAE8.410e-2547.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQS9_ECTSI1.010e-2446.05Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig106contigD-dichotoma_M_contig106:159345..161959 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_000380.1
Exons3
Model size2167
Cds size1230
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig106.553.1prot_D-dichotoma_M_contig106.553.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig106 160008..161487 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927552.1175287-UTR-D-dichotoma_M_contig106:159344..1600071622927552.1175287-UTR-D-dichotoma_M_contig106:159344..160007Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig106 159345..160007 -
1690798032.1117215-UTR-D-dichotoma_M_contig106:159344..1600071690798032.1117215-UTR-D-dichotoma_M_contig106:159344..160007Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig106 159345..160007 -
1622927552.1579852-UTR-D-dichotoma_M_contig106:161487..1615141622927552.1579852-UTR-D-dichotoma_M_contig106:161487..161514Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig106 161488..161514 -
1690798032.1446457-UTR-D-dichotoma_M_contig106:161487..1615141690798032.1446457-UTR-D-dichotoma_M_contig106:161487..161514Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig106 161488..161514 -
1622927552.1717818-UTR-D-dichotoma_M_contig106:161712..1619591622927552.1717818-UTR-D-dichotoma_M_contig106:161712..161959Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig106 161713..161959 -
1690798032.1530237-UTR-D-dichotoma_M_contig106:161712..1619591690798032.1530237-UTR-D-dichotoma_M_contig106:161712..161959Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig106 161713..161959 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927552.1308846-CDS-D-dichotoma_M_contig106:160007..1609831622927552.1308846-CDS-D-dichotoma_M_contig106:160007..160983Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig106 160008..160983 -
1690798032.1250753-CDS-D-dichotoma_M_contig106:160007..1609831690798032.1250753-CDS-D-dichotoma_M_contig106:160007..160983Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig106 160008..160983 -
1622927552.1437197-CDS-D-dichotoma_M_contig106:161233..1614871622927552.1437197-CDS-D-dichotoma_M_contig106:161233..161487Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig106 161234..161487 -
1690798032.135747-CDS-D-dichotoma_M_contig106:161233..1614871690798032.135747-CDS-D-dichotoma_M_contig106:161233..161487Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig106 161234..161487 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig106.553.1

>prot_D-dichotoma_M_contig106.553.1 ID=prot_D-dichotoma_M_contig106.553.1|Name=mRNA_D-dichotoma_M_contig106.553.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=410bp
MEHQSPPRLLVRERSRSPVRGDFPPVCAGEAPSPLRETSFRVLDADCVNP
STPTSCKFSPHPDDEMTPGGTIKAEGYCAAIRTVGYTTVGGKSFMSGRCP
TCRKMVKSADQVCTPNATPPPSPWRTAISSPLRSLSRSPRRSPKTGGTAP
NGDGEASPPRSPLRTRLGSPFRSPPRFGGKRAAEESETPEKDGDEARKEE
VTTLSSNPFEEGRRSRSPVRNVNREASRGLRRSPWDVPSKSKGYEDGDVE
PRSLGNRRVEPCAPRSPPARAFPLSERTKTQRAFFNGPRHAEEPPAPNAG
TSGRAKDSMRKSRSLSPVRISTKETVPSPLSPVRSPYKGSFFDQPIEESE
ASVGRAGIPATPPLKDRARSRSPFRNPLRSPFSEKGLRSPLRSPFKAPWF
SKEVPVETE*
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mRNA from alignment at D-dichotoma_M_contig106:159345..161959-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig106.553.1 ID=mRNA_D-dichotoma_M_contig106.553.1|Name=mRNA_D-dichotoma_M_contig106.553.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=2615bp|location=Sequence derived from alignment at D-dichotoma_M_contig106:159345..161959- (Dictyota dichotoma ODC1387m male)
GAGAGCGTGGATCCCAGGGTCCTCTAGATGTAGATGTCCACAATCCTTGT
AAACGTCCCCGCCTGAACAGATCTACAGCTCAACCCGCAACCCTCACTTG
CTCCTCGTTGGTGTCTCCCTCGCATCTTTCTCCTGTGGTGGTTTTTGCTT
TCCACACTTACAACCCTCGACGTGTTTGTTCTTCTCAGCTATCCCTATTT
TTGAAAGGGAGATTGAATAGTTGTCATCGTCAATAATCTACCGCCAGGTG
AACATAGGGCGGGCCTCACAATCCAGGCATTTGACTTTCTCAGCGAACTG
TGTTGCTGGGTGCAGGCCCTGGTAAGTTGCCTCAACTGGAGCATGGTGTG
TGTTATGACATCTTCAGATCCTGTGCCGCCGGGCTCGTTCAAGAAAAACA
CCCATGATCTCAACTTGCAGAATCCTGTGTGCATGTGTCTCTCAGGTGCT
GCACTGTCTCGCCGCTGGAATAATGGAGCACCAGTCGCCACCAAGGCTTC
TCGTCCGAGAGCGTAGCCGCAGTCCCGTTCGTGGTGATTTTCCGCCAGTG
TGTGCAGGTGAAGCGCCGTCGCCGCTTCGGGAAACATCATTCCGAGTGTT
GGATGCGGATTGCGTGAACCCCTCAACGCCTACATCATGCAAGTTCTCTC
CACACCCGGATGATGAGATGACACCTGGTGGCACTATCAAGGCCGAGGGC
TACTGTGCAGCCATTCGGACTGTCGGGTAAGTGGTTTGTGCGATTTGATG
TGGAGTAGGTGAAATCTAGAGTCTGGTTGGCAATATTCGGATGAAGTTGA
CTAAGATCTGAGATGATGTATTCCCTAAACGTCTAGGGCGAATATGAAGC
ACTTAAACGTTGCTAGGGTCTAAACTTGTCGCACCTGATATTCTTATTCC
CGATTGTACATGTATCCGATACGGGCATTTCAGTGTAGTCTAATAGCACA
TTCAAAACGTGATTGACCAAATCCAGGTACACCACCGTCGGCGGCAAGAG
CTTTATGTCAGGCAGGTGCCCCACGTGCAGGAAGATGGTGAAGTCAGCTG
ATCAAGTCTGCACGCCGAACGCGACACCTCCTCCATCCCCTTGGAGGACG
GCGATCTCGAGTCCTCTCCGCAGTTTGTCGCGAAGTCCCCGCCGCAGTCC
CAAGACGGGAGGCACGGCTCCGAATGGTGATGGTGAGGCATCCCCACCTC
GAAGCCCCCTTCGAACTCGCCTTGGGAGTCCATTTAGGTCTCCCCCACGA
TTTGGTGGCAAGAGAGCTGCTGAAGAGAGTGAGACACCAGAGAAGGATGG
GGATGAGGCACGGAAGGAAGAGGTGACTACCCTCAGCTCGAACCCTTTCG
AGGAGGGTAGACGTTCTCGTAGCCCGGTTCGGAACGTCAATCGTGAGGCG
TCGCGGGGCTTGAGGAGAAGCCCTTGGGACGTTCCATCCAAGTCGAAGGG
CTACGAAGATGGAGATGTTGAGCCTCGCTCCCTTGGAAACAGGCGCGTTG
AGCCATGCGCACCTCGCAGTCCTCCGGCGCGAGCTTTCCCGCTTTCCGAG
CGAACGAAGACTCAGAGGGCCTTCTTCAACGGGCCTCGACACGCGGAAGA
ACCCCCGGCACCCAATGCGGGTACCTCCGGGCGTGCGAAGGACTCGATGA
GAAAGAGTCGGTCCCTGAGTCCCGTTCGCATCTCCACCAAGGAAACGGTG
CCATCGCCGCTTAGCCCGGTCCGGAGCCCGTACAAGGGATCGTTCTTCGA
TCAGCCGATCGAGGAGTCGGAGGCATCTGTGGGACGGGCCGGGATTCCCG
CGACTCCCCCACTCAAGGACAGGGCACGCTCGCGCAGTCCTTTCCGCAAC
CCCCTGCGCAGCCCCTTCTCGGAGAAGGGCCTCCGCAGCCCGTTGCGGAG
CCCGTTCAAGGCTCCATGGTTCAGTAAGGAGGTTCCCGTTGAGACAGAGT
GAGGGTCGTTCCTTTTGCTGAATAGCTGGGGGATGCGTGCCATGTCCTTG
TTCTCCTTGGAGCTCGGAACCAGCGCTGCATCTGCACCCCTAGATGGCAC
GCTCCACTTGCGAGCAAATATTTGCGTTTTTTGTGAGCAGTAATGCCTTG
CATGTTGCGTCAGAGTGCGCGTCGAGATTCTCTTCTGGATTTTGCCTCGG
AGGCGACGGCGTGCTGAGCACCTATCGGTCAACGGCTTTTCTGTCTGTAA
GCCCAAGGTGTAGGCTGTCCGCCTCTGCAACCATTTTTGAGGTGTGTGAT
CGTGCCGATGTGTCGGGCAAGCTCTGAAGCACCTTGTTAGCCCCACGTCG
GCCATGCCTAGCGCCAGATGCGTAGAGAGGTGGTGGTTGGGCATGGCTTG
AGGTTAGGCATGGAGGGCCCCCGGGTCCCGTCTTGTTGAGCGCTTTGCAT
GGTACGAATGCGTCGTTATTGGACGGGGATGTAACCGAGTTGATTAGCTC
CCGTGTATGATAAAGGATAACCAGCGCCTTCTGAGTCATGGTATATTGAT
CCCATTGCCGCGTTCACGTCTACATGTCTTGTAATAAATGCGTCCCACTC
TTGAACAGCGATCATCTCATGGGGATCATCAACGCAGGGATGAGTTCTGT
CCCAGCAACTCTGGC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig106:159345..161959-

>mRNA_D-dichotoma_M_contig106.553.1 ID=mRNA_D-dichotoma_M_contig106.553.1|Name=mRNA_D-dichotoma_M_contig106.553.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=2460bp|location=Sequence derived from alignment at D-dichotoma_M_contig106:159345..161959- (Dictyota dichotoma ODC1387m male)
ATGGAGCACCAGTCGCCACCAAGGCTTCTCGTCCGAGAGCGTAGCCGCAG
TCCCGTTCGTGGTGATTTTCCGCCAGTGTGTGCAGGTGAAGCGCCGTCGC
CGCTTCGGGAAACATCATTCCGAGTGTTGGATGCGGATTGCGTGAACCCC
TCAACGCCTACATCATGCAAGTTCTCTCCACACCCGGATGATGAGATGAC
ACCTGGTGGCACTATCAAGGCCGAGGGCTACTGTGCAGCCATTCGGACTG
TCGGATGGAGCACCAGTCGCCACCAAGGCTTCTCGTCCGAGAGCGTAGCC
GCAGTCCCGTTCGTGGTGATTTTCCGCCAGTGTGTGCAGGTGAAGCGCCG
TCGCCGCTTCGGGAAACATCATTCCGAGTGTTGGATGCGGATTGCGTGAA
CCCCTCAACGCCTACATCATGCAAGTTCTCTCCACACCCGGATGATGAGA
TGACACCTGGTGGCACTATCAAGGCCGAGGGCTACTGTGCAGCCATTCGG
ACTGTCGGGTACACCACCGTCGGCGGCAAGAGCTTTATGTCAGGCAGGTG
CCCCACGTGCAGGAAGATGGTGAAGTCAGCTGATCAAGTCTGCACGCCGA
ACGCGACACCTCCTCCATCCCCTTGGAGGACGGCGATCTCGAGTCCTCTC
CGCAGTTTGTCGCGAAGTCCCCGCCGCAGTCCCAAGACGGGAGGCACGGC
TCCGAATGGTGATGGTGAGGCATCCCCACCTCGAAGCCCCCTTCGAACTC
GCCTTGGGAGTCCATTTAGGTCTCCCCCACGATTTGGTGGCAAGAGAGCT
GCTGAAGAGAGTGAGACACCAGAGAAGGATGGGGATGAGGCACGGAAGGA
AGAGGTGACTACCCTCAGCTCGAACCCTTTCGAGGAGGGTAGACGTTCTC
GTAGCCCGGTTCGGAACGTCAATCGTGAGGCGTCGCGGGGCTTGAGGAGA
AGCCCTTGGGACGTTCCATCCAAGTCGAAGGGCTACGAAGATGGAGATGT
TGAGCCTCGCTCCCTTGGAAACAGGCGCGTTGAGCCATGCGCACCTCGCA
GTCCTCCGGCGCGAGCTTTCCCGCTTTCCGAGCGAACGAAGACTCAGAGG
GCCTTCTTCAACGGGCCTCGACACGCGGAAGAACCCCCGGCACCCAATGC
GGGTACCTCCGGGCGTGCGAAGGACTCGATGAGAAAGAGTCGGTCCCTGA
GTCCCGTTCGCATCTCCACCAAGGAAACGGTGCCATCGCCGCTTAGCCCG
GTCCGGAGCCCGTACAAGGGATCGTTCTTCGATCAGCCGATCGAGGAGTC
GGAGGCATCTGTGGGACGGGCCGGGATTCCCGCGACTCCCCCACTCAAGG
ACAGGGCACGCTCGCGCAGTCCTTTCCGCAACCCCCTGCGCAGCCCCTTC
TCGGAGAAGGGCCTCCGCAGCCCGTTGCGGAGCCCGTTCAAGGCTCCATG
GTTCAGTAAGGAGGTTCCCGTTGAGACAGAGTGAGTACACCACCGTCGGC
GGCAAGAGCTTTATGTCAGGCAGGTGCCCCACGTGCAGGAAGATGGTGAA
GTCAGCTGATCAAGTCTGCACGCCGAACGCGACACCTCCTCCATCCCCTT
GGAGGACGGCGATCTCGAGTCCTCTCCGCAGTTTGTCGCGAAGTCCCCGC
CGCAGTCCCAAGACGGGAGGCACGGCTCCGAATGGTGATGGTGAGGCATC
CCCACCTCGAAGCCCCCTTCGAACTCGCCTTGGGAGTCCATTTAGGTCTC
CCCCACGATTTGGTGGCAAGAGAGCTGCTGAAGAGAGTGAGACACCAGAG
AAGGATGGGGATGAGGCACGGAAGGAAGAGGTGACTACCCTCAGCTCGAA
CCCTTTCGAGGAGGGTAGACGTTCTCGTAGCCCGGTTCGGAACGTCAATC
GTGAGGCGTCGCGGGGCTTGAGGAGAAGCCCTTGGGACGTTCCATCCAAG
TCGAAGGGCTACGAAGATGGAGATGTTGAGCCTCGCTCCCTTGGAAACAG
GCGCGTTGAGCCATGCGCACCTCGCAGTCCTCCGGCGCGAGCTTTCCCGC
TTTCCGAGCGAACGAAGACTCAGAGGGCCTTCTTCAACGGGCCTCGACAC
GCGGAAGAACCCCCGGCACCCAATGCGGGTACCTCCGGGCGTGCGAAGGA
CTCGATGAGAAAGAGTCGGTCCCTGAGTCCCGTTCGCATCTCCACCAAGG
AAACGGTGCCATCGCCGCTTAGCCCGGTCCGGAGCCCGTACAAGGGATCG
TTCTTCGATCAGCCGATCGAGGAGTCGGAGGCATCTGTGGGACGGGCCGG
GATTCCCGCGACTCCCCCACTCAAGGACAGGGCACGCTCGCGCAGTCCTT
TCCGCAACCCCCTGCGCAGCCCCTTCTCGGAGAAGGGCCTCCGCAGCCCG
TTGCGGAGCCCGTTCAAGGCTCCATGGTTCAGTAAGGAGGTTCCCGTTGA
GACAGAGTGA
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