mRNA_D-dichotoma_M_contig106.547.1 (mRNA) Dictyota dichotoma ODC1387m male
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Overview
Homology
BLAST of mRNA_D-dichotoma_M_contig106.547.1 vs. uniprot
Match: D7FQS3_ECTSI (F-box, zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQS3_ECTSI) HSP 1 Score: 441 bits (1134), Expect = 3.950e-139 Identity = 284/683 (41.58%), Postives = 367/683 (53.73%), Query Frame = 1
Query: 487 VVTSLEQALDSCPAMPGAVLETSVEACLRRSFPGITGSSTTVGS---FTGVVLMLVTRAPRSLGSVIVPLLVRFVAETSCG---------AHADADDDCRSSLACKSCAIARASPDIGEDGGQAPRTR--LCDKQRKRDTVLRSLLHWVADAHFRQCSRVLQISLYRTVLDGVQQTMEASATAASWTASSSAFPVACRLLLAFVGTVAGDGGAHICSFLQDRCRLELRALLAG---------LRSRQLTSTQLAHGQAAHTR---FPMLQAYVGHLCLCRHIQDSTAREHLLWLIRQTLAVFRLV----EGDDHTEAMGGRHGRRDYLVALRDLCHAVALVLTRPTQQQGASAAVPEGGGELLEIIFDSEARPLAGLPRPLAINAVGILKRAGHLQLARTGALL-----------GPSPKRPCSTAG--VTSWQDEPSRECYSSDFRGAPIAFKRSWSFAAAGLRMEFPSL----RPCEVVESEDDDSLVDEDGVSPQDQVGDAGARETPSSNQWDLLPEEAVMVVLSFLTPKRICRLTCVDRAWRDLAGLPRIWRPFFEARWSPKALENEQSLAEVTNELVGIRQLHGDRPGRRHMFVKTPRVYFWAGQEARGGGSGSV---DWCTLYRNRHRAEVDAR-RLCARTEAPWRVCPFLGCGSLLKS--GIKQHMKTHKRPRQGR 2376
+V+ L+ ALD+CPAMP LETS+E CLRR PG + GS F VL LV+ +PRSL +V +LVRFVA C A + D R C SC+ A + G D + R R C+ Q KRD VL S+L W D HFRQCSR+LQ S+ R V GV+Q + A A + AS +FP+ CRLLL+FVG +AGDGGA I FL++RC E+R L R R+ A G+ R PML AYVGHLCLCRH+ D + HL+WL RQ LAV R++ EG T A R ++ L L HA+AL+LTRP + S+ VPE G LLEI+FDS+ RPL+ +PRPLA A+ +LK AGHLQLAR+ LL + +R S G + +E + DF+ A +AF+ SWS AAAG+ M+ PS R D GD + N W +P+E + V SF+TPKR+CRL CVDRAWR+L + +WRPFFEARW A+ ++ L V++ L+ + +R V W E G + DW LYR+RHRAE AR R A+TE PW VCPFLGC S LKS +K+H++THKRPR+ R
Sbjct: 18 LVSGLQGALDACPAMPTLTLETSIEDCLRRPSPG--AAVWAFGSTRMFVSGVLSLVSSSPRSLCQAVVSVLVRFVAGDGCDTLDDSLALDAEGEETQDRRRRSRCLSCSTALSDNAAGTDASETERARPQCCNAQEKRDLVLESMLRWAVDVHFRQCSRLLQASVNRAVCHGVRQALVA-AELSRRQASPPSFPLGCRLLLSFVGGLAGDGGAQIAGFLRERCGAEMRRFLTRGRWRPPSGTARGRRHADAWTATGRGVARRQPELPMLDAYVGHLCLCRHVSDPLSATHLVWLARQALAVLRMLDMPEEGAPGTTAAPERRQNSNFEAVLASLSHALALLLTRPKRGGVCSSIVPETVGNLLEIVFDSDPRPLSCVPRPLAEAAIDVLKEAGHLQLARSDELLRLPWGSRRGEPNAAGRREESKLGPVAATVTEEGASFASGIDFQRASLAFRNSWSLAAAGVDMQLPSTNHSGRSRRGDGGGDSXXXXXXXXXXXXSADGDVDGARAIAGNGWGRVPDEVTLRVFSFMTPKRVCRLACVDRAWRELLTVSGVWRPFFEARWPLTAIGSDLDLVGVSDRLLAEGLGSARKNAKRRRRHGKIGVVHWRTSEDTSGQQQPLLERDWMALYRDRHRAERAARGRFAAKTEFPWLVCPFLGCVSSLKSEFAVKRHVRTHKRPREKR 697
BLAST of mRNA_D-dichotoma_M_contig106.547.1 vs. uniprot
Match: A0A6H5JX00_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX00_9PHAE) HSP 1 Score: 335 bits (858), Expect = 2.380e-100 Identity = 212/516 (41.09%), Postives = 271/516 (52.52%), Query Frame = 1
Query: 763 CKSCAIARASPDIGEDGGQAP--RTRLCDKQRKRDTVLRSLLHWVADAHFRQCSRVLQISLYRTVLDGVQQTMEASATAASWTASSSAFPVACRLLLAFVGTVAGDGGAHICSFLQDRCRLELRALLAG---------LRSRQLTSTQLAHGQAAHTR---FPMLQAYVGHLCLCRHIQDSTAREHLLWLIRQTLAVFRLV----EGDDHTEAMGGRHGRRDYLVALRDLCHAVALVLTRPTQQQGASAAVPEGGGELLEIIFDSEARPLAGLPRPLAINAVGILKRAGHLQLARTGALLGP-----------SPKRPCSTAG--VTSWQDEPSRECYSSDFRGAPIAFKRSWSFAAAGLRMEFPSL----RPCEVVESEDDDSLVDEDGVSPQDQVGDAGARETPSSNQWDLLPEEAVMVVLSFLTPKRICRLTCVDRAWRDLAGLPRIWRPFFEARWSPKALENEQSLAEVTNELVGIRQLHGDRPGRRHMFVKTPRVYFWAGQEARGGGSGSV 2205
C SC+ A + G D + R + C Q KRD VL S+L W D HFRQCSR+LQ S+ R V GV+Q + A A + AS +FP CRLLL+FVG +AGDGGA I FL++RC ELR LA R R+ T A G A R PML AYVGHLCLCRH+ D A HL WL RQ L V R++ EG T A R ++ L L HA+AL+LTRP + S+ VPE G LLEI+FDS+ARPL+ +PRPLA A+ +LK AGH+QLAR+ LL P + +R S G + +E + DFR A +AF+ +WS AAAG+ + PS R D GD + N W +P+E M VLSF+TPKR+CRL CVDRAWR+L + +WRPFFEARW A+ ++ LA V++ L+ + +R V W E R GG V
Sbjct: 54 CLSCSAALSDNPAGTDASETEGARPQCCSAQEKRDVVLESMLRWAVDVHFRQCSRLLQASVNRAVCHGVRQALVA-AELSMRQASPPSFPPGCRLLLSFVGGLAGDGGAQIAGFLRERCGAELRRFLARGRWRPPSGTCRGRRHADTCTATGGAVAGRQAESPMLDAYVGHLCLCRHVSDPLAATHLAWLARQALTVLRMLDMPEEGAHETTAAAERRQSSNFADVLASLSHALALLLTRPKRGGLCSSTVPETAGNLLEIVFDSDARPLSCVPRPLAEAAIDVLKEAGHIQLARSDELLRPPRGSRRGEPNAAGRRTKSKLGPVAATVTEEGASFASGIDFRRASLAFRSTWSLAAAGVDTQLPSTSRSGRSRRGDGGGDSSXXXXXXXXXXXXADGDVDGAGAIAGNGWGRVPDEVTMRVLSFMTPKRVCRLACVDRAWRELLMVSGVWRPFFEARWPLSAIGSDLDLAGVSDRLLAEGLGSARKKAKRRRRHGKIGVVHWRTPEGRKGGKRKV 568 The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig106.547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dichotoma_M_contig106.547.1 >prot_D-dichotoma_M_contig106.547.1 ID=prot_D-dichotoma_M_contig106.547.1|Name=mRNA_D-dichotoma_M_contig106.547.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=788bp MTTTKGWEYLEKLSSILRDFSKLYIEADDADEDGRQVAIVEWRQGLTSLFback to top mRNA from alignment at D-dichotoma_M_contig106:75051..81516+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-dichotoma_M_contig106.547.1 ID=mRNA_D-dichotoma_M_contig106.547.1|Name=mRNA_D-dichotoma_M_contig106.547.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=6466bp|location=Sequence derived from alignment at D-dichotoma_M_contig106:75051..81516+ (Dictyota dichotoma ODC1387m male)back to top Coding sequence (CDS) from alignment at D-dichotoma_M_contig106:75051..81516+ >mRNA_D-dichotoma_M_contig106.547.1 ID=mRNA_D-dichotoma_M_contig106.547.1|Name=mRNA_D-dichotoma_M_contig106.547.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=4728bp|location=Sequence derived from alignment at D-dichotoma_M_contig106:75051..81516+ (Dictyota dichotoma ODC1387m male)back to top |