mRNA_D-dichotoma_M_contig106.544.1 (mRNA) Dictyota dichotoma ODC1387m male
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Overview
Homology
BLAST of mRNA_D-dichotoma_M_contig106.544.1 vs. uniprot
Match: A0A6H5K1Y5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K1Y5_9PHAE) HSP 1 Score: 298 bits (764), Expect = 3.610e-86 Identity = 197/493 (39.96%), Postives = 267/493 (54.16%), Query Frame = 3
Query: 378 QEERGGRGPFRFLGRAFGQLKRLGELINPDAVAEAKKTWDGLNSDVRGALDELRQ---------------------------ALELPELGEDEKLELKIKEK--------MEELARDGLEAAKGAFGDVLDHVSEEISGTFESLLSDTLSEENLREASSTWRRFLDTPGIKVLVRNRSLWAGAEQAVQRHLNSLMSERTANLAERMVNATADFALHFAGLPQNSDKSDFEVFQELSSKMCHLQVAAEKLLPMVSGAMRLLGYESYVATAGKFVRAQAISRITLTVCATTLMGLEPERDPFVLSVIASFSLGHLTKDAALNMAAFFQKAILEA---SAPGEDIAXXXXXXXXXADPGQSRAVDFVTELFNCESTCDDLGRQVFGFLEVVKRAVP----------------------ESLHGMPEG----------GSTRSPRKLGVDGMVLRATLQAAAVLNEASVSTVTLSILLILVVQVAWLSSVRCCLRHL 1646
QE G LGRAF Q KR+GE++NPDAVA A++ W L D+R A D+ A+E D + + E L +D AA+G FGDV ++E+ +FE+ LS+ LSE N+R AS WRR LDTPG+++L ++R LWAGAE+AV+R+L+ +SE++A A+R VNATADFALHFAGL +N+ KSD EVF+ELS K+CHLQ AAEKL P+ A+ LLGY+ Y +R+ A+SR+T TV AT L+GL P RDPF+L++IASFSLGHL+KD A NMAAFFQK +++ P + P VD TEL TC +LG Q F F +VV+RA+ E+ + EG G R+PRKL ++G+VLR + AAV++ S L + L++ + + S CC R L
Sbjct: 6 QEHTAGGRRGGLLGRAFQQAKRIGEIVNPDAVANAEQAWKELAPDLRQAADDXXXXXXXXXXXXXXARDIWXXXXXXXSGFGAVETDRTAADSSATFAQEREEGGSVTVGWEGLKKDIERAAQGVFGDVFGEAADEVLASFETRLSEALSEGNVRAASQLWRRLLDTPGVQLLAQDRRLWAGAEKAVRRYLSGFLSEKSAKEAQRAVNATADFALHFAGLSRNAAKSDHEVFEELSHKLCHLQGAAEKLWPLAVLALPLLGYQDYAKKLESAIRSNALSRVTQTVSATVLLGLNP-RDPFLLTLIASFSLGHLSKDVAQNMAAFFQKVLVDQVRFDQPQTKQSLSDAEGAPLLSP-----VDLATELVTGTKTCQELGHQAFAFFKVVQRALEGSSPSFVVESVDVNDNGVHPSTEASTALQEGRPPPQPLQQRGPRRTPRKLKLEGIVLRQAIWVAAVIDSKYFSLEVLVVCLVVGCVLVFGSIWVCCWRGL 492 The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig106.544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dichotoma_M_contig106.544.1 >prot_D-dichotoma_M_contig106.544.1 ID=prot_D-dichotoma_M_contig106.544.1|Name=mRNA_D-dichotoma_M_contig106.544.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=363bp MEELARDGLEAAKGAFGDVLDHVSEEISGTFESLLSDTLSEENLREASSTback to top mRNA from alignment at D-dichotoma_M_contig106:47254..60688- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-dichotoma_M_contig106.544.1 ID=mRNA_D-dichotoma_M_contig106.544.1|Name=mRNA_D-dichotoma_M_contig106.544.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=13435bp|location=Sequence derived from alignment at D-dichotoma_M_contig106:47254..60688- (Dictyota dichotoma ODC1387m male)back to top Coding sequence (CDS) from alignment at D-dichotoma_M_contig106:47254..60688- >mRNA_D-dichotoma_M_contig106.544.1 ID=mRNA_D-dichotoma_M_contig106.544.1|Name=mRNA_D-dichotoma_M_contig106.544.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=2178bp|location=Sequence derived from alignment at D-dichotoma_M_contig106:47254..60688- (Dictyota dichotoma ODC1387m male)back to top |