mRNA_D-dichotoma_M_contig1054.504.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1054.504.1
Unique NamemRNA_D-dichotoma_M_contig1054.504.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig1054.504.1 vs. uniprot
Match: D7FTN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN3_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 3.840e-43
Identity = 82/154 (53.25%), Postives = 98/154 (63.64%), Query Frame = 2 
Query:  191 SYELFENEKELRRLAVLPPEDRILAAVAGGNAWCVEELFAQGCPADVKHGLGNTVLHVAASRDDVLIMKVLLNMNLDVNDTNLSGSTALACAIGGKGGENGESARLLRAAGGVDRLGTDTDTPRCMLDTPLRQPRRVIDDIAEDLGRMAFTGQF 652
            SYELFENE+ELRRLAVLPPEDR+LAA A G AWCVEELFAQGCP + KH                                 +SG+T L+CA+GG GG +GE A LLRA+GG+ RL  DT +   +LD  LR+PRR +DD A+ LGRM +TGQF
Sbjct:    2 SYELFENERELRRLAVLPPEDRVLAAAAAGRAWCVEELFAQGCPIEGKH---------------------------------MSGATPLSCAMGGAGGPDGECATLLRASGGLVRLVKDTISSGSILDVSLRRPRRAMDDRADALGRMVYTGQF 122
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1054.504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTN3_ECTSI3.840e-4353.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1054contigD-dichotoma_M_contig1054:89043..91878 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-11_001750.1
Exons5
Model size732
Cds size594
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927547.2731786-UTR-D-dichotoma_M_contig1054:89042..891191622927547.2731786-UTR-D-dichotoma_M_contig1054:89042..89119Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1054 89043..89119 -
1690798029.33317-UTR-D-dichotoma_M_contig1054:89042..891191690798029.33317-UTR-D-dichotoma_M_contig1054:89042..89119Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1054 89043..89119 -
1622927547.3490202-UTR-D-dichotoma_M_contig1054:91817..918781622927547.3490202-UTR-D-dichotoma_M_contig1054:91817..91878Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1054 91818..91878 -
1690798029.4118407-UTR-D-dichotoma_M_contig1054:91817..918781690798029.4118407-UTR-D-dichotoma_M_contig1054:91817..91878Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1054 91818..91878 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927547.2847502-CDS-D-dichotoma_M_contig1054:89119..893381622927547.2847502-CDS-D-dichotoma_M_contig1054:89119..89338Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1054 89120..89338 -
1690798029.3451633-CDS-D-dichotoma_M_contig1054:89119..893381690798029.3451633-CDS-D-dichotoma_M_contig1054:89119..89338Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1054 89120..89338 -
1622927547.2960923-CDS-D-dichotoma_M_contig1054:89709..898081622927547.2960923-CDS-D-dichotoma_M_contig1054:89709..89808Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1054 89710..89808 -
1690798029.3579814-CDS-D-dichotoma_M_contig1054:89709..898081690798029.3579814-CDS-D-dichotoma_M_contig1054:89709..89808Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1054 89710..89808 -
1622927547.3093913-CDS-D-dichotoma_M_contig1054:90604..907421622927547.3093913-CDS-D-dichotoma_M_contig1054:90604..90742Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1054 90605..90742 -
1690798029.3767037-CDS-D-dichotoma_M_contig1054:90604..907421690798029.3767037-CDS-D-dichotoma_M_contig1054:90604..90742Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1054 90605..90742 -
1622927547.3235798-CDS-D-dichotoma_M_contig1054:91183..913181622927547.3235798-CDS-D-dichotoma_M_contig1054:91183..91318Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1054 91184..91318 -
1690798029.3908393-CDS-D-dichotoma_M_contig1054:91183..913181690798029.3908393-CDS-D-dichotoma_M_contig1054:91183..91318Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1054 91184..91318 -
1622927547.3357944-CDS-D-dichotoma_M_contig1054:91814..918171622927547.3357944-CDS-D-dichotoma_M_contig1054:91814..91817Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1054 91815..91817 -
1690798029.4017315-CDS-D-dichotoma_M_contig1054:91814..918171690798029.4017315-CDS-D-dichotoma_M_contig1054:91814..91817Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1054 91815..91817 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1054.504.1prot_D-dichotoma_M_contig1054.504.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1054 89120..91817 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1054.504.1

>prot_D-dichotoma_M_contig1054.504.1 ID=prot_D-dichotoma_M_contig1054.504.1|Name=mRNA_D-dichotoma_M_contig1054.504.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=198bp
MSDIMRILARDECLSQRKNNSKTIEDANLHINWTPILRHPLPTSYELFEN
EKELRRLAVLPPEDRILAAVAGGNAWCVEELFAQGCPADVKHGLGNTVLH
VAASRDDVLIMKVLLNMNLDVNDTNLSGSTALACAIGGKGGENGESARLL
RAAGGVDRLGTDTDTPRCMLDTPLRQPRRVIDDIAEDLGRMAFTGQF*
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mRNA from alignment at D-dichotoma_M_contig1054:89043..91878-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1054.504.1 ID=mRNA_D-dichotoma_M_contig1054.504.1|Name=mRNA_D-dichotoma_M_contig1054.504.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=2836bp|location=Sequence derived from alignment at D-dichotoma_M_contig1054:89043..91878- (Dictyota dichotoma ODC1387m male)
AGCTTGCCGACAAGCGTCCGATATTCGGCGACATGAAGCTCTAGCGCAGC
GTGAACATCAAATGGTAGGCTTATCTTCGGGTCGTCGAACCCCCCACAGT
CTGACTACTGAGGATATTCCAACTGCAAGCCAGACCTCAACTTGAGATCT
CATCATAGAAACAATACTGTCTCCTTGGCGAAGGCAATTTTCTCAGACTG
GATCCTGCTCGAACATAGGAAGTTCCGTGCATTGATTGTGTGATGACATC
GGTAGATATATCTCACGACTATTACACGGCCTAAACATCTGCGCAATATC
ACACACGCACTGTAGGCTTATAGATCTCATGAAATATCTGATCAAAGGAT
TCAAACTACATCGCGCCCACAATAGTGAGGTTCAATCGAGGATGGACTTT
GACATCCTTCAATGTGTTCTCACGGCGAGCTAATCCACGGCTTTGTCATC
ACGAGCTTAAGCGTATATGTTGAGCTATATGATTGCCGGAACCCTCGTGT
GATCGCTATTCGTATCGTCTCCCATGCCATTGACGACATATTTCCAATCC
ATCGGATCAGTCCGATATCATGCGCATCTTGGCACGAGATGAATGCCTCT
CTCAGCGCAAGAATAACAGCAAGACTATAGAGGATGCCAACCTGCACATC
AATTGGACTCCCATCCTTCGACATCCATTGCCTACAAGTTACGAGGTAGG
ATCTCGATCTCCTGGTCTTGGTATACAGTCGTCAGGCTTTGCCACTTAGT
TAATCGCGATGATGGATATTCCTTATGAAAAGGATACTCTTCCTCTGATA
GCAATATCCCAGGATCCTCGCAATACTGCAGGATGATGTGCCCTTAGCTA
TTCATACCAATTTCAATGGTCGTCAAATTATAAGAACTATTTGCTTCACA
GACTTCATCAACAGTATGATCACCGAGTCCACCACAAAAAGGAGGTAGAC
GAGCTAGTAGTTATGATCCACATTCTTAGCTCGGAGACTCTTCCTCATTT
TGTGTCAACCACTTCAGTCGCACCTGATGATGTTATTGTTCCGGGAGCAT
ATTGGAGGATGTGCTTGGTGTTTGTACATCACGCCGGCTGCGAGTCATTT
CCCCTCTCTCTTGGCTGCTATATCATAACACAGCAGCTGTTCGAAAATGA
GAAAGAGCTTCGTCGACTGGCTGTGTTGCCTCCTGAAGATCGTATTCTCG
CTGCCGTGGCTGGTGGAAATGCGTGGTGTGTAGAGGAATTATTCGCCCAG
GGTTGCCCTGCCGATGTTAAGCATGTGAGCAAGAGATACTCGGGTCCCAA
GTTACCAGACCAGTTGGAAACCTCGAAGAGGGATTACTACAGTAGCGATG
GTGTCAGGATCACGGCCGGAAATGCCCCCATTTCCAGATAGAGACAGACG
TGCATCCGACTTCATGCTATGATCGGGTTCTTCTTTGCCTGCGGTGCTCC
GGTTTTGTGCAAGAGGCCGACCAAAGCATTGTACAATAGTAAGTGGAACA
TTTCAGCACTACCCTGGGACTCAATGGCAGTGGGTGATCCACATCACAAA
TTATTAGAGTCCGCAGTTTAGAATGACGCTTCTATAAGCAGGTGAAGGCG
TATTTTGGTGGTGTTTATTTGACCTGGAAATTATGGTTGTCTGCCGTGTC
GCCCATGAAAAAAGCGATTGACATTTCCCCCTGCCGGTTTTTTGCAGTCC
TCATGCTTTGTGCTATGAGGTGAGATGAGGTGAGGTGACGCGCACCACAT
ACGGCCGGAGGCACAAAAGGAGTAGTGCCGAAATCGAGCGGCAGGTGGTT
CCAATGACGTCGTCGTGTATGATCGCCAGCAGTATCTCTGCCCTAAACAC
AAAAAGGGTTGCATTGAGGATATTAGTGAACTGAAGTAGAGAACGCCATT
CGTGGGTGATTTACAATACATATATTGTTGTCTCCATCTGATCTGACAGC
AGGGGCATTGTCCCAGGCAATATTGAATAAGATCAGGCGAGATCAGATAA
ATCCTTTCGGTACATACTGCTACATTCTTCTTTGTACACAACGATCTCTC
CCATGCCGTGATAATATTAGGGATTGGGAAATACTGTGCTACATGTTGCG
GCGTCCAGGGACGATGTGCTGATTATGAAGGTTCTACTTAACATGAACTT
GGATGTCAACGACACGAACGTGAGTTACTGGGTGTTCGGTATCGAAAGAG
GGTGAGTGGGGAACAGAAGAACAATCACGCATTGCATTGGAGAAAATATG
GGCATGTGTGTGACGGGCGGGTCCTTTCTTTACCTCTTGGCACAAAAGTT
TACGATGTATCTTCAATCCAGGGATGGCATGTCATGCGATTTTGACTCTG
CTCAGGGTCACATCGATGAGTGGATTTGCTAAATCATACTTCCTCTATTA
GTGCTCCCCTGCGATCTTGGCTCCAATGCGACGGATCTTTCAGCGGAAAC
GTGATGCATGGTATCTGAATTTCACATGTTACCCCGTACTGATGCGTGCC
TTGCTTCATTTTATGTCGCTTTCTTTCGTTCTCCGTACAGCTGAGTGGCT
CTACAGCGCTTGCCTGCGCCATAGGAGGGAAAGGGGGTGAAAACGGGGAA
TCTGCGAGACTTCTACGTGCTGCTGGTGGCGTTGACCGCTTAGGCACGGA
TACAGATACTCCAAGATGTATGCTTGATACACCACTTCGGCAACCAAGGA
GAGTCATAGATGACATAGCGGAGGATCTGGGTAGAATGGCCTTCACAGGT
CAATTCTAAGTCGCCGCCACCGTCCAATATAACTTTTCTTTCGCGCTCTC
GATGACTCGTCCTTGAAGAAAACAAAAATGTAATCT
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1054:89043..91878-

>mRNA_D-dichotoma_M_contig1054.504.1 ID=mRNA_D-dichotoma_M_contig1054.504.1|Name=mRNA_D-dichotoma_M_contig1054.504.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1188bp|location=Sequence derived from alignment at D-dichotoma_M_contig1054:89043..91878- (Dictyota dichotoma ODC1387m male)
ATGATGTCCGATATCATGCGCATCTTGGCACGAGATGAATGCCTCTCTCA
GCGCAAGAATAACAGCAAGACTATAGAGGATGCCAACCTGCACATCAATT
GGACTCCCATCCTTCGACATCCATTGCCTACAAGTTACGAGTCCGATATC
ATGCGCATCTTGGCACGAGATGAATGCCTCTCTCAGCGCAAGAATAACAG
CAAGACTATAGAGGATGCCAACCTGCACATCAATTGGACTCCCATCCTTC
GACATCCATTGCCTACAAGTTACGAGCTGTTCGAAAATGAGAAAGAGCTT
CGTCGACTGGCTGTGTTGCCTCCTGAAGATCGTATTCTCGCTGCCGTGGC
TGGTGGAAATGCGTGGTGTGTAGAGGAATTATTCGCCCAGGGTTGCCCTG
CCGATGTTAAGCATCTGTTCGAAAATGAGAAAGAGCTTCGTCGACTGGCT
GTGTTGCCTCCTGAAGATCGTATTCTCGCTGCCGTGGCTGGTGGAAATGC
GTGGTGTGTAGAGGAATTATTCGCCCAGGGTTGCCCTGCCGATGTTAAGC
ATGGATTGGGAAATACTGTGCTACATGTTGCGGCGTCCAGGGACGATGTG
CTGATTATGAAGGTTCTACTTAACATGAACTTGGATGTCAACGACACGAA
CGGATTGGGAAATACTGTGCTACATGTTGCGGCGTCCAGGGACGATGTGC
TGATTATGAAGGTTCTACTTAACATGAACTTGGATGTCAACGACACGAAC
CTGAGTGGCTCTACAGCGCTTGCCTGCGCCATAGGAGGGAAAGGGGGTGA
AAACGGGGAATCTGCGAGACTTCTACGTGCTGCTGGTGGCGTTGACCGCT
TAGGCACGGATACAGATACTCCAAGATGTATGCTTGATACACCACTTCGG
CAACCAAGGAGAGTCATAGATGACATAGCGGAGGATCTGGGTAGAATGGC
CTTCACAGGTCAATTCTAACTGAGTGGCTCTACAGCGCTTGCCTGCGCCA
TAGGAGGGAAAGGGGGTGAAAACGGGGAATCTGCGAGACTTCTACGTGCT
GCTGGTGGCGTTGACCGCTTAGGCACGGATACAGATACTCCAAGATGTAT
GCTTGATACACCACTTCGGCAACCAAGGAGAGTCATAGATGACATAGCGG
AGGATCTGGGTAGAATGGCCTTCACAGGTCAATTCTAA
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