mRNA_D-dichotoma_M_contig1052.500.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1052.500.1
Unique NamemRNA_D-dichotoma_M_contig1052.500.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1052.500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1052contigD-dichotoma_M_contig1052:160912..161424 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size514
Cds size513
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927545.1574032-CDS-D-dichotoma_M_contig1052:160911..1614241622927545.1574032-CDS-D-dichotoma_M_contig1052:160911..161424Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1052 160912..161424 +
1690798028.8706782-CDS-D-dichotoma_M_contig1052:160911..1614241690798028.8706782-CDS-D-dichotoma_M_contig1052:160911..161424Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1052 160912..161424 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1052.500.1prot_D-dichotoma_M_contig1052.500.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1052 160912..161424 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1052.500.1

>prot_D-dichotoma_M_contig1052.500.1 ID=prot_D-dichotoma_M_contig1052.500.1|Name=mRNA_D-dichotoma_M_contig1052.500.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=171bp
PINQPLRYLSTTTALPINHYGVTNQPLRRYQSTITAVATTHSVAYQPLRR
YLSTTTTLPINHRQRCLSTTTALPINHYGVTYQPLRRFLSTTTTLPIKPL
RRYRSNHYGVTIVPEWLHQDISFLQSSASSTRLATNFPSSGMLHSLYAVR
RKPQHQIFWKPIRAKTAPFC*
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mRNA from alignment at D-dichotoma_M_contig1052:160912..161424+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1052.500.1 ID=mRNA_D-dichotoma_M_contig1052.500.1|Name=mRNA_D-dichotoma_M_contig1052.500.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=513bp|location=Sequence derived from alignment at D-dichotoma_M_contig1052:160912..161424+ (Dictyota dichotoma ODC1387m male)
CCGATCAATCAACCACTGCGTTACCTATCAACCACTACGGCGTTACCAAT
CAACCACTACGGCGTTACCAATCAACCATTACGGCGTTACCAATCAACCA
TTACGGCGGTAGCTACTACCCACAGTGTTGCCTATCAACCACTACGGCGT
TACCTTTCAACCACTACAACATTACCTATCAACCATAGACAGCGTTGCCT
ATCAACTACTACGGCGTTACCTATCAACCACTACGGCGTTACCTATCAAC
CACTACGGCGTTTTCTATCAACCACTACGACATTACCGATCAAACCACTA
CGGCGTTACCGATCAAACCACTACGGCGTTACTATCGTACCCGAATGGTT
ACATCAAGACATCTCCTTTTTGCAATCAAGTGCTTCATCAACTCGTCTAG
CAACTAACTTTCCTTCTTCGGGAATGCTTCATTCCTTGTATGCTGTCCGA
CGAAAACCGCAGCATCAAATATTTTGGAAACCCATTCGGGCCAAAACGGC
CCCATTTTGCTAG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1052:160912..161424+

>mRNA_D-dichotoma_M_contig1052.500.1 ID=mRNA_D-dichotoma_M_contig1052.500.1|Name=mRNA_D-dichotoma_M_contig1052.500.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1026bp|location=Sequence derived from alignment at D-dichotoma_M_contig1052:160912..161424+ (Dictyota dichotoma ODC1387m male)
CCGATCAATCAACCACTGCGTTACCTATCAACCACTACGGCGTTACCAAT
CAACCACTACGGCGTTACCAATCAACCATTACGGCGTTACCAATCAACCA
TTACGGCGGTAGCTACTACCCACAGTGTTGCCTATCAACCACTACGGCGT
TACCTTTCAACCACTACAACATTACCTATCAACCATAGACAGCGTTGCCT
ATCAACTACTACGGCGTTACCTATCAACCACTACGGCGTTACCTATCAAC
CACTACGGCGTTTTCTATCAACCACTACGACATTACCGATCAAACCACTA
CGGCGTTACCGATCAAACCACTACGGCGTTACTATCGTACCCGAATGGTT
ACATCAAGACATCTCCTTTTTGCAATCAAGTGCTTCATCAACTCGTCTAG
CAACTAACTTTCCTTCTTCGGGAATGCTTCATTCCTTGTATGCTGTCCGA
CGAAAACCGCAGCATCAAATATTTTGGAAACCCATTCGGGCCAAAACGGC
CCCATTTTGCTAGCCGATCAATCAACCACTGCGTTACCTATCAACCACTA
CGGCGTTACCAATCAACCACTACGGCGTTACCAATCAACCATTACGGCGT
TACCAATCAACCATTACGGCGGTAGCTACTACCCACAGTGTTGCCTATCA
ACCACTACGGCGTTACCTTTCAACCACTACAACATTACCTATCAACCATA
GACAGCGTTGCCTATCAACTACTACGGCGTTACCTATCAACCACTACGGC
GTTACCTATCAACCACTACGGCGTTTTCTATCAACCACTACGACATTACC
GATCAAACCACTACGGCGTTACCGATCAAACCACTACGGCGTTACTATCG
TACCCGAATGGTTACATCAAGACATCTCCTTTTTGCAATCAAGTGCTTCA
TCAACTCGTCTAGCAACTAACTTTCCTTCTTCGGGAATGCTTCATTCCTT
GTATGCTGTCCGACGAAAACCGCAGCATCAAATATTTTGGAAACCCATTC
GGGCCAAAACGGCCCCATTTTGCTAG
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