mRNA_D-dichotoma_M_contig105.490.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig105.490.1
Unique NamemRNA_D-dichotoma_M_contig105.490.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig105.490.1 vs. uniprot
Match: D7G8V2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8V2_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 5.460e-11
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = 1 
Query:  136 MPSLLATELDTLSAVSEFMDDREFLWFA-------PAWGVTRHTATKAITRYTGKSLLIYSFACGLKPSAAVCSEIARLGRLDLLQLARKNGCPWDDKT 411
            M + L  + D  S + EF+D  +FL+FA        AWG  R   T+A+T  T  + L  +F CGL   A VC+ +A+LGRLDLLQ AR++GC W++ T
Sbjct:    1 MDAALFAQSDVASCLVEFVDYEQFLFFAGVCRAWKEAWG-QRPPTTRAVTEDTTVAQLSQNFQCGLSLIADVCTSVAKLGRLDLLQCARRHGCAWNEVT 98
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BLAST of mRNA_D-dichotoma_M_contig105.490.1 vs. uniprot
Match: D7FH77_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FH77_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 1.140e-6
Identity = 40/100 (40.00%), Postives = 53/100 (53.00%), Query Frame = 1 
Query:  136 MPSLLATELDTLSAVSEFMDDREFLWFAP-------AWGVTRHTATKAITRYTGKSLLIYSFACGL-KPSAAVCSEIARLGRLDLLQLARKNGCPWDDKT 411
            +PS+L    D L  +  F+ D  FL+F P       AWG  R T T+  T     + L   F CGL + +  +C+ IARLG +DLL+LAR NGC W   T
Sbjct:    6 VPSVLNNP-DILGCLISFVADESFLFFGPVCRDWRAAWG-NRPTTTRIATSDLTPTQLQRGFDCGLTRTNPELCAAIARLGDVDLLELARDNGCRWGAST 103
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig105.490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8V2_ECTSI5.460e-1142.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FH77_ECTSI1.140e-640.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig105contigD-dichotoma_M_contig105:590315..593939 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1884
Cds size996
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig105.490.1prot_D-dichotoma_M_contig105.490.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig105 591087..592103 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927540.9810271-UTR-D-dichotoma_M_contig105:590314..5906771622927540.9810271-UTR-D-dichotoma_M_contig105:590314..590677Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig105 590315..590677 -
1690798026.2474644-UTR-D-dichotoma_M_contig105:590314..5906771690798026.2474644-UTR-D-dichotoma_M_contig105:590314..590677Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig105 590315..590677 -
1622927540.9977865-UTR-D-dichotoma_M_contig105:590696..5910861622927540.9977865-UTR-D-dichotoma_M_contig105:590696..591086Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig105 590697..591086 -
1690798026.2864122-UTR-D-dichotoma_M_contig105:590696..5910861690798026.2864122-UTR-D-dichotoma_M_contig105:590696..591086Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig105 590697..591086 -
1622927541.0501056-UTR-D-dichotoma_M_contig105:592103..5921321622927541.0501056-UTR-D-dichotoma_M_contig105:592103..592132Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig105 592104..592132 -
1690798026.3633947-UTR-D-dichotoma_M_contig105:592103..5921321690798026.3633947-UTR-D-dichotoma_M_contig105:592103..592132Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig105 592104..592132 -
1622927541.0641932-UTR-D-dichotoma_M_contig105:593833..5939391622927541.0641932-UTR-D-dichotoma_M_contig105:593833..593939Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig105 593834..593939 -
1690798026.3761134-UTR-D-dichotoma_M_contig105:593833..5939391690798026.3761134-UTR-D-dichotoma_M_contig105:593833..593939Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig105 593834..593939 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927541.0122378-CDS-D-dichotoma_M_contig105:591086..5919951622927541.0122378-CDS-D-dichotoma_M_contig105:591086..591995Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig105 591087..591995 -
1690798026.3380573-CDS-D-dichotoma_M_contig105:591086..5919951690798026.3380573-CDS-D-dichotoma_M_contig105:591086..591995Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig105 591087..591995 -
1622927541.032626-CDS-D-dichotoma_M_contig105:592016..5921031622927541.032626-CDS-D-dichotoma_M_contig105:592016..592103Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig105 592017..592103 -
1690798026.350233-CDS-D-dichotoma_M_contig105:592016..5921031690798026.350233-CDS-D-dichotoma_M_contig105:592016..592103Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig105 592017..592103 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig105.490.1

>prot_D-dichotoma_M_contig105.490.1 ID=prot_D-dichotoma_M_contig105.490.1|Name=mRNA_D-dichotoma_M_contig105.490.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=332bp
MPSLLATELDTLSAVSEFMDDREFLWFAPAWGVTRHTATKAITRYTGKSL
LIYSFACGLKPSAAVCSEIARLGRLDLLQLARKNGCPWDDKTCSAAAEGG
HLRVLQFARENGCHWGARTCMMAAEGGHLQVLQWARENRCPWNEASWYRA
ARGGHVHVLRWAREAGCGGASGTCMLAALGGRINVLRWARETGSQWSVHT
CAMAARGGHLHVLRWMREEGCPWDARTCSEAACGGHLQVLQWARENGCPW
DAVTAANAARGGHLNILRWARDNGCPWDATTTANAARGCHLEILAWARRQ
GCPWTAETTTAVLETAHPAVIDWARSNGYIV*
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mRNA from alignment at D-dichotoma_M_contig105:590315..593939-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig105.490.1 ID=mRNA_D-dichotoma_M_contig105.490.1|Name=mRNA_D-dichotoma_M_contig105.490.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=3625bp|location=Sequence derived from alignment at D-dichotoma_M_contig105:590315..593939- (Dictyota dichotoma ODC1387m male)
CTACTACTTAGATCTCTGCTGTGCTGCGGATCCAAGCTGTATAGCGCTCG
CGACGCCGAGAAACAGCCCTGGAAAGAGACCTTAGCCTGCACGATCATCC
GCATTGGTGAGTTTTCTCAGAGCAAGGGTCCTTTAGTCCCGCGAACTGAG
GGATATCTCTCATGCTCACTAATGTATTCCCAAGATGCTGCGTCCAGCCC
TTCGGCTGCACCAGCCCTCGATACGACTCTCTCTTCCACAACGGCATTAC
AGCCCCCTCACCCGTGTACCGTCTGGAGGACTATCAATGATGCACCTAAC
GCTGGGTACATGAGCCGTGTATTGTTCCTCCGGTACCTCGTGAGCACGAG
CTTCGGTCAGCAGCGACATGGCTGATTTTTTTAATGTTCCAACACATGCT
CCGTGGTCCTCGCGGTGCGGGAGTTGTGTGCAGTCCGCAGCCTTTTCATG
CTACAACGATGTTGTACAACGATAGTGGTGTAGGTCTATGGAAGCCGGCG
TACACCTCCGTGATAGACTCGGATCGGAGTTTTCATGGGCGTGAATCGCT
GAGCCCTGATTCCAGACGTAATCGTCCCACGTTGAAGAGACACCCAAGAA
CTGTCTGTAGTAAGGGAGAGGCAGTGTCGGCACGCCTTCAGGACGGGGAC
CACCAGGCGAAGGCGAGTTTGGTGAGTGTTCCGATCACCACCATCATATC
ATAGATCACATGTCCGGCCAATCCGAGGAGATAGCTAGCTTGGCCTTACG
CTTCGACCCTGGGATGATCCTGAAGGCTGAGACGAGGATTACTTCGTGCA
CGTAGATCAACCGGCCGGTATCCGTGACTCCCTTGGACTTTTCGTGTTGA
CGACCGATTCCCATCTCTCGCCAGCAGGAACGTCGTGCAGTGTATGCCGT
ACATACGGAGCAGTACAAATCATGAGGAAATGGACTTTCGACTCAGCTTT
CCTGCCCCCGGTCGAGTTTTCATGTTGCGATGAAACGGATCCCTGTACTC
GAGCACAAACGCGAACGAACGCTCGATTGACTCGAACGAACACGAGCCAA
GCGAAGATCCACCCACAGTACAGTATCTTGCTGCGATCCGAAGCGCTCTG
CTGGAGTTGGGATGATTGGGAGGTGACCCTTCGGCTCATTTTGCACGTAT
AGTCGTGTTAATAAAGCTAAAAAAGTATCCATTGTTCCATTCTTACAACC
ATGACACTGCAGGAACTGGCATCCAGTCCTTCAAATCGTAAGAAATACGG
CTCTTCGACCCAATTACTTGGATTAAGCATGCAGCCAATCAAAGAGCCAT
TTTGTTACGACTTGAAGTACAGTGGGGGGAGCAGTAACAAAATGGCTCTA
CGCCCTTTTTACTTAGATTTAGTATTGAACCAAGCAAAGAGTCATGTTTT
AATTGCTCCTCCCACTGCACAGTACAGTTCTGTACTACAGGGGTTCAACT
CATAAAATTTGAAATCTTCGATCTACTGCTCTATTTAAATCCAAGTGGAT
CATACAAAAGTACCTTAATGTTACGGTTTGCGATTGCCGTACACGCCAAC
AAGGTTTCACGTCGAATTGCAGCAACCGAAGATTCGACGATTTTCATACT
GAGTCCAAGTAAATTTCGTCAAAGATCAATTATATTACGACTTGAAGGAC
TAGATACTCGCGATATTGTTCCGTCTCTCGCAGATCGCGGCGCGAAGAAA
GGAGAAAGGGTCCGAGAGACGTTATTCCTGTAGGTGCTCGTTTTTGTGTG
CCTGATCGATCGCGCGTGATGACATTGCCTCGTCTCGTGCCTCCCCGGGA
CGCGCAGCAGGTCGGCGGCGGGGATCGAGACCAAAGATGCCTAGCCTCCT
CGCTACGGAGCTGGACACGCTCTCCGCCGTGTCGGAATTCATGGACGATA
GGGAGTTCCTGTGGTTTGCGCCGGTTTCGAGGCTGTGGCGGAAGGCCTGG
GGCGTGACCCGCCACACTGCGACGAAGGCCATCACGCGGTACACCGGCAA
GTCCCTGCTGATCTACAGCTTCGCCTGCGGGCTCAAGCCGAGCGCGGCCG
TCTGCTCGGAGATCGCGCGCCTCGGCCGGCTCGACCTCCTGCAGCTCGCC
AGGAAGAACGGGTGTCCGTGGGACGACAAGACCTGCTCGGCCGCGGCTGA
AGGTGGGCACCTGAGGGTGCTCCAGTTTGCGAGGGAGAACGGCTGCCACT
GGGGCGCGAGGACATGCATGATGGCCGCGGAGGGGGGACACCTTCAGGTC
CTGCAGTGGGCGAGGGAGAACCGCTGCCCCTGGAACGAGGCCTCCTGGTA
CCGAGCCGCGAGGGGCGGCCACGTGCACGTCCTCCGCTGGGCGCGGGAGG
CCGGCTGCGGGGGTGCCTCGGGCACGTGCATGCTCGCCGCCCTGGGGGGC
CGCATCAACGTCCTCCGTTGGGCCCGAGAAACCGGTTCTCAGTGGAGCGT
GCACACGTGCGCGATGGCGGCCCGCGGCGGCCACCTCCACGTGCTCCGGT
GGATGCGGGAGGAAGGGTGCCCCTGGGACGCGCGAACTTGCAGCGAAGCG
GCCTGCGGGGGGCACCTGCAGGTCCTGCAGTGGGCCCGGGAGAATGGCTG
CCCCTGGGACGCGGTAACGGCAGCCAATGCCGCCCGTGGGGGCCACCTGA
ACATCCTACGTTGGGCTCGCGACAACGGCTGCCCCTGGGATGCGACAACG
ACCGCCAACGCAGCCCGCGGGTGTCACCTGGAAATTCTTGCGTGGGCGCG
ACGCCAAGGATGCCCGTGGACGGCGGAAACCACGACTGCGGTGCTCGAGA
CGGCACATCCAGCCGTCATTGATTGGGCAAGAAGCAACGGCTATATTGTT
TGATTCGGTCCTGCTGGCCCTCGGATTCTCGCCACCCGCACCTCGTCCCT
CAACCCCCGCCCCCGCCCCCGTTAACCCTGCGTCCGTGATACCGTGCCGA
ACTAGCCAATGGGAGTCATGAAGAAGCCGTTCCCCCGCGCTATCGCACTT
CCGGCAGCACACGGAGGCCATCATCATGCAGAGGTCAGGCAGATGAGTTC
TATCAGGAAGGACGCACACCCATCTTGTCCACCTCAGACAAGAAGCCTGA
GCTCCATGGGCACGTGCAACCCGAACTCACGCAGGAGGAGCGGCTCGCTT
GGCGAAGTGATCCACGTTCCAGCAAAAATTCGAGATGGTTCACGCATGCA
TTCGAGCGCCCCACGGACAGATGAGTCTTCCCCGTGTATCAAAGCCAGCA
AAGCCAGCAAAGCGTGCCATGGAATAAAGAGGGATAGGCACCACTAGTTC
CCCAAAGCGCCGCGTCATCCATCACCAGGTACCTCGTATCCTCGGCGTTT
CGAAGCATATGATTTCGGGATGCTACAGAATTACCGAGGGGTTCCGACAG
GTTTTCCGAGCTCATCCAGCGATCCTGTCGTGACGGTCGTCTCTCGCTCT
GTGATCCCGGCCGGGTCGAGCGCTTCTCGTGAGACATCTCGTGGTCGATC
TACCCGCGATCCTTCCTTAAAGGAGGACAGGGGGTCCGTCCGTATCGTTG
CAAAAATGAACAAAATCCGCCGGCCGGTTTCGTGTGAAATGCGACCGAAT
GGATCCGTTGTGCATTTTGTTACGG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig105:590315..593939-

>mRNA_D-dichotoma_M_contig105.490.1 ID=mRNA_D-dichotoma_M_contig105.490.1|Name=mRNA_D-dichotoma_M_contig105.490.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1992bp|location=Sequence derived from alignment at D-dichotoma_M_contig105:590315..593939- (Dictyota dichotoma ODC1387m male)
ATGCCTAGCCTCCTCGCTACGGAGCTGGACACGCTCTCCGCCGTGTCGGA
ATTCATGGACGATAGGGAGTTCCTGTGGTTTGCGCCGATGCCTAGCCTCC
TCGCTACGGAGCTGGACACGCTCTCCGCCGTGTCGGAATTCATGGACGAT
AGGGAGTTCCTGTGGTTTGCGCCGGCCTGGGGCGTGACCCGCCACACTGC
GACGAAGGCCATCACGCGGTACACCGGCAAGTCCCTGCTGATCTACAGCT
TCGCCTGCGGGCTCAAGCCGAGCGCGGCCGTCTGCTCGGAGATCGCGCGC
CTCGGCCGGCTCGACCTCCTGCAGCTCGCCAGGAAGAACGGGTGTCCGTG
GGACGACAAGACCTGCTCGGCCGCGGCTGAAGGTGGGCACCTGAGGGTGC
TCCAGTTTGCGAGGGAGAACGGCTGCCACTGGGGCGCGAGGACATGCATG
ATGGCCGCGGAGGGGGGACACCTTCAGGTCCTGCAGTGGGCGAGGGAGAA
CCGCTGCCCCTGGAACGAGGCCTCCTGGTACCGAGCCGCGAGGGGCGGCC
ACGTGCACGTCCTCCGCTGGGCGCGGGAGGCCGGCTGCGGGGGTGCCTCG
GGCACGTGCATGCTCGCCGCCCTGGGGGGCCGCATCAACGTCCTCCGTTG
GGCCCGAGAAACCGGTTCTCAGTGGAGCGTGCACACGTGCGCGATGGCGG
CCCGCGGCGGCCACCTCCACGTGCTCCGGTGGATGCGGGAGGAAGGGTGC
CCCTGGGACGCGCGAACTTGCAGCGAAGCGGCCTGCGGGGGGCACCTGCA
GGTCCTGCAGTGGGCCCGGGAGAATGGCTGCCCCTGGGACGCGGTAACGG
CAGCCAATGCCGCCCGTGGGGGCCACCTGAACATCCTACGTTGGGCTCGC
GACAACGGCTGCCCCTGGGATGCGACAACGACCGCCAACGCAGCCCGCGG
GTGTCACCTGGAAATTCTTGCGTGGGCGCGACGCCAAGGATGCCCGTGGA
CGGCGGAAACCACGACTGCGGTGCTCGAGACGGCACATCCAGCCGTCATT
GATTGGGCAAGAAGCAACGGCTATATTGTTTGAGCCTGGGGCGTGACCCG
CCACACTGCGACGAAGGCCATCACGCGGTACACCGGCAAGTCCCTGCTGA
TCTACAGCTTCGCCTGCGGGCTCAAGCCGAGCGCGGCCGTCTGCTCGGAG
ATCGCGCGCCTCGGCCGGCTCGACCTCCTGCAGCTCGCCAGGAAGAACGG
GTGTCCGTGGGACGACAAGACCTGCTCGGCCGCGGCTGAAGGTGGGCACC
TGAGGGTGCTCCAGTTTGCGAGGGAGAACGGCTGCCACTGGGGCGCGAGG
ACATGCATGATGGCCGCGGAGGGGGGACACCTTCAGGTCCTGCAGTGGGC
GAGGGAGAACCGCTGCCCCTGGAACGAGGCCTCCTGGTACCGAGCCGCGA
GGGGCGGCCACGTGCACGTCCTCCGCTGGGCGCGGGAGGCCGGCTGCGGG
GGTGCCTCGGGCACGTGCATGCTCGCCGCCCTGGGGGGCCGCATCAACGT
CCTCCGTTGGGCCCGAGAAACCGGTTCTCAGTGGAGCGTGCACACGTGCG
CGATGGCGGCCCGCGGCGGCCACCTCCACGTGCTCCGGTGGATGCGGGAG
GAAGGGTGCCCCTGGGACGCGCGAACTTGCAGCGAAGCGGCCTGCGGGGG
GCACCTGCAGGTCCTGCAGTGGGCCCGGGAGAATGGCTGCCCCTGGGACG
CGGTAACGGCAGCCAATGCCGCCCGTGGGGGCCACCTGAACATCCTACGT
TGGGCTCGCGACAACGGCTGCCCCTGGGATGCGACAACGACCGCCAACGC
AGCCCGCGGGTGTCACCTGGAAATTCTTGCGTGGGCGCGACGCCAAGGAT
GCCCGTGGACGGCGGAAACCACGACTGCGGTGCTCGAGACGGCACATCCA
GCCGTCATTGATTGGGCAAGAAGCAACGGCTATATTGTTTGA
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