mRNA_D-dichotoma_M_contig105.486.1 (mRNA) Dictyota dichotoma ODC1387m male
|
Overview
Homology
BLAST of mRNA_D-dichotoma_M_contig105.486.1 vs. uniprot
Match: A0A6H5KF78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF78_9PHAE) HSP 1 Score: 295 bits (755), Expect = 1.180e-76 Identity = 243/591 (41.12%), Postives = 329/591 (55.67%), Query Frame = 3
Query: 2955 MVTPVRAVHVTGGSPGTAVVTPSSSERAGERLHNQARETRERLERRRKDG--ASPVA-VEGLSPFTPRRIANPQ--LGN----PSLSGMERVERLYRDAIQRDSKLEMTRKMEEENPRDCTFTPKMSTRASSRGRSQTRGRSPGGDSDGSSRRDRS------------------LSCFQALYDDAEHRRAKMEERTTARIAEVAGPGSPVITARGRARSRDPLDVRLRENAERWARHRDQLEQRKIVQEREGCTFKPEFKTTRSASAPRTGTR-SRDSGSEGPDAXXXXXXIEPFYVRAERYLAAREQKLDQLKREVEAREKAEVTFQPNVSPGLDVEGEEEGQGSSAERSNRXXXXXXXXXXXNGRNDDVFERLLRAATEQELHKAALKEAYLKQEREEFHDFQPRLPAKVADSGPSAPLETRLQESTAQWVQSREDRERRRIEMEEEHCTFRPSIGFSSTAGSDVESAGSTGSGSRRSRRSA----------------SADSRLRSRSSQGIVASDKASFEARSRAFQEAREKRLNKLREEKQRQELSEATFHPAIGFGNNPRALNGTSDVRGGRASGEAAVTASVDGA 4595
+ TP R V +T ++P+ +E +G RLH QARE RERLERRRK+ +P+A + GL+ F+PRR + P+ G P +SG +R+E LYRDAI+R+S+LE+ R+ EEE PR+CTFTP++S R GRS RG S SDG F ALY DA+ R+AKME A EV SPVITA GR + P+DVR++E+AERW R +LE++K +E+EGCTF P F RS+SAPR R S XXXXXXIE F R+ +L ARE+ + +LK E E RE+A TF+P++ P G S+A+ ++ DVFERLLRAA QE++KAALKE +LK+ERE+++DF+PRLP + D+ P PL+ R++ ST +WV+++ RE+RR+E+E EHCTFRPS+G S R R+S G+ + A+F AR AFQ+A+++RL LR+EK++ EL EATF P IG RA + D GG + G AV SV GA
Sbjct: 713 LFTPTRGVALT--------LSPALAEASGNRLHEQAREARERLERRRKEVPVVTPLAPMPGLTSFSPRRWSAPRGPAGGAGAAPVVSGPDRLEGLYRDAIERNSRLELARRAEEERPRECTFTPEISKR----GRSLVRGYS----SDGGGGEXXXXXXXXXXXXXXXXXXXSLFDTFDALYQDAKRRQAKMEALKGAH-EEVGRRTSPVITAMGRQATGVPIDVRMKEDAERWVRRFQELEEKKAEKEKEGCTFMPNFSIGRSSSAPRMRPRRSNGXXXXXXXXXXXXXXIEAFVARSAIFLEARERNMKKLKEEAEERERALATFKPSILPW--------GGRSAADDASAAA--------------DVFERLLRAAENQEMNKAALKEEFLKKEREQYNDFEPRLPTRQKDA-PMEPLDARIRRSTEEWVKNKALREQRRLELEAEHCTFRPSLGGGGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTRQRASRRASGGVGPAAAAAFAAREAAFQDAKKQRLEALRKEKEQLELQEATFQPVIGA-EARRAGDRGGDPVGGSSRGTDAVAGSVTGA 1262
BLAST of mRNA_D-dichotoma_M_contig105.486.1 vs. uniprot
Match: D8LNB8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNB8_ECTSI) HSP 1 Score: 270 bits (691), Expect = 4.370e-69 Identity = 230/594 (38.72%), Postives = 320/594 (53.87%), Query Frame = 3
Query: 2955 MVTPVRAVHVTGGSPGTAVVTPSSSERAGERLHNQARETRERLERRRKDG--ASPVA-VEGLSPFTPRRIANPQ--LGN----PSLSGMERVERLYRDAIQRDSKLEMTRKMEEENPRDCTFTPKMSTRASSRGRSQTRGRSPGGDSDGSSRRDRS----------------------LSCFQALYDDAEHRRAKMEERTTARIAEVAGPGSPVITARGRARSRDPLDVRLRENAERWARHRDQLEQRKIVQEREGCTFKPEFKTTRSASAPRTGTRSRDSGSEGPDAXXXXXXIEPFYVRAERYLAAREQKLDQLKREVEAREKAEVTFQPNVSPGLDVEGEEEGQGSSAERSNRXXXXXXXXXXXNGRNDDVFERLLRAATEQELHKAALKEAYLKQEREEFHDFQPRLPAKVADSGPSAPLETRLQESTAQWVQSREDRERRRIEMEEEHCTFRPSIG----------------FSSTAGSDVESAGSTGSGSRRSRRSASADSRLRSRSSQGIVASDKASFEARSRAFQEAREKRLNKLREEKQRQELSEATFHPAIGFGNNPRALNGTSDVRGGRASGEAAVTASVDGA 4595
+ TP R V VT ++P+S+E +G RLH QARE + +P+A + G + F+PRR + P+ G P +SG++R+E LYRDAI+R+S+LE+ R+ EEE PR+CTFTP++S R GRS RG S G F ALY DA+ R+AKME EV SPVITA GR + P+DVR++E+AERW R +LE++K +E+EGCTF P F RS+SAPR R R S + XXXXX IE F R+ +L RE+ +++LK+E E RE+A TF+P++ P G GS+A+ ++ DVFERLLRAA QE++KAALKE +LK+ERE+ +DF+PRLP + D+ P PL+ R+++ST +WV+++ RE+RR+E+E EHCTFRPS+G +S R R+S G+ + +F AR AFQ+A+++RL LR+EK++ E+ EATF P IG + G S V GG G AV SV GA
Sbjct: 703 LFTPTRGVAVT--------LSPASAEASGNRLHEQAREAXXXXXXXXXEVPVVTPLAPMPGFTSFSPRRWSAPRGPAGGAGAAPVVSGLDRLEGLYRDAIERNSRLELARRAEEEKPRECTFTPEISKR----GRSLVRGYSGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFDTFDALYQDAKRRQAKMEALKA--HEEVGTRTSPVITAMGRQATGVPVDVRMKEDAERWVRRFQELEEKKAEKEKEGCTFMPNFSIGRSSSAPRM--RPRRS-NXXXXXXXXXXGIEAFVARSAIFLETRERNMEKLKQEAEERERALATFKPSILPW--------GGGSAADDASSAA--------------DVFERLLRAAENQEMNKAALKEEFLKKEREQNNDFEPRLPTRQKDA-PLEPLDARIRKSTEEWVKNKALREQRRLELEAEHCTFRPSLGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSTRQRASRRASGGVGPAAATAFAAREAAFQDAKKQRLEALRKEKEQLEVQEATFQPVIGAEARRASGRGGSSV-GGXXRGTDAVAGSVTGA 1255 The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig105.486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dichotoma_M_contig105.486.1 >prot_D-dichotoma_M_contig105.486.1 ID=prot_D-dichotoma_M_contig105.486.1|Name=mRNA_D-dichotoma_M_contig105.486.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=2004bp MEQSATTEDSVVSSGKRFDEVDRPAAGVAAGDAGGPPPSASSLPPQPPDGback to top mRNA from alignment at D-dichotoma_M_contig105:228450..254821- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-dichotoma_M_contig105.486.1 ID=mRNA_D-dichotoma_M_contig105.486.1|Name=mRNA_D-dichotoma_M_contig105.486.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=26372bp|location=Sequence derived from alignment at D-dichotoma_M_contig105:228450..254821- (Dictyota dichotoma ODC1387m male)back to top Coding sequence (CDS) from alignment at D-dichotoma_M_contig105:228450..254821- >mRNA_D-dichotoma_M_contig105.486.1 ID=mRNA_D-dichotoma_M_contig105.486.1|Name=mRNA_D-dichotoma_M_contig105.486.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=12024bp|location=Sequence derived from alignment at D-dichotoma_M_contig105:228450..254821- (Dictyota dichotoma ODC1387m male)back to top |