mRNA_D-dichotoma_M_contig105.485.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig105.485.1
Unique NamemRNA_D-dichotoma_M_contig105.485.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig105.485.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig105contigD-dichotoma_M_contig105:177816..179132 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1289
Cds size909
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig105.485.1prot_D-dichotoma_M_contig105.485.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig105 178019..178955 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927540.6806512-UTR-D-dichotoma_M_contig105:177815..1780181622927540.6806512-UTR-D-dichotoma_M_contig105:177815..178018Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig105 177816..178018 +
1690798026.09488-UTR-D-dichotoma_M_contig105:177815..1780181690798026.09488-UTR-D-dichotoma_M_contig105:177815..178018Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig105 177816..178018 +
1622927540.7240865-UTR-D-dichotoma_M_contig105:178955..1791321622927540.7240865-UTR-D-dichotoma_M_contig105:178955..179132Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig105 178956..179132 +
1690798026.121384-UTR-D-dichotoma_M_contig105:178955..1791321690798026.121384-UTR-D-dichotoma_M_contig105:178955..179132Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig105 178956..179132 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927540.694992-CDS-D-dichotoma_M_contig105:178018..1788811622927540.694992-CDS-D-dichotoma_M_contig105:178018..178881Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig105 178019..178881 +
1690798026.103325-CDS-D-dichotoma_M_contig105:178018..1788811690798026.103325-CDS-D-dichotoma_M_contig105:178018..178881Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig105 178019..178881 +
1622927540.7122345-CDS-D-dichotoma_M_contig105:178909..1789551622927540.7122345-CDS-D-dichotoma_M_contig105:178909..178955Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig105 178910..178955 +
1690798026.1115437-CDS-D-dichotoma_M_contig105:178909..1789551690798026.1115437-CDS-D-dichotoma_M_contig105:178909..178955Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig105 178910..178955 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig105.485.1

>prot_D-dichotoma_M_contig105.485.1 ID=prot_D-dichotoma_M_contig105.485.1|Name=mRNA_D-dichotoma_M_contig105.485.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=303bp
MAEETKSTHPDAPRVPQESFSDSHQFELVVQRQLESLAKERKEERARRDQ
SQARWDQTQEQMQQLAAALQSRSFDESTNPPSPPLDNQHTQEATDSTRSP
PADRSPTHPQSPTNMSPQYNSSPYGGFCPGTSPFPAYPRPPGPQAVPTQY
GSYASWQGAQGQGGGADPITSWMAGLSTPPPPVTAQQASGIMGRQGWNPA
QVMTPGRSQGSPFTYGYQGSAPFHSAISPFLGAHYQGTWAPPTLTSRPPW
NPQLVCHHRMAAMLADESETFGEEEESRAVTQKQATGAVASTGCSRGNPF
AS*
back to top

mRNA from alignment at D-dichotoma_M_contig105:177816..179132+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig105.485.1 ID=mRNA_D-dichotoma_M_contig105.485.1|Name=mRNA_D-dichotoma_M_contig105.485.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=1317bp|location=Sequence derived from alignment at D-dichotoma_M_contig105:177816..179132+ (Dictyota dichotoma ODC1387m male)
TGGCGACGAGGTGCTTGTGGGTATAGGCAGAGACTGGCGGAGAAGAACCG
CCTATTCTTTGCAGTGTTTAGGATAGATACGCGGATTACAGGAAGGCCTG
GTGTCACGAACAAGGCCTACTCCTCGCAAGTTTGGTTTTCTCCCCGAGTC
TCGTTTGACATTGTTCTCCACGAGTCCAGCATGACACGAACGGGACAGGA
ACGATGGCTGAAGAGACGAAGTCAACCCACCCAGACGCACCACGCGTGCC
TCAAGAAAGCTTCAGTGACTCCCACCAGTTCGAGCTAGTGGTACAGCGGC
AGCTGGAATCCCTAGCCAAAGAAAGGAAGGAAGAACGCGCCAGACGGGAC
CAATCGCAGGCGAGATGGGACCAGACGCAAGAGCAAATGCAACAGCTCGC
CGCGGCTCTACAGTCCAGGTCCTTCGACGAGAGTACGAACCCGCCTAGTC
CTCCTCTGGATAATCAGCATACGCAAGAGGCCACAGACAGCACACGGTCT
CCCCCTGCGGATCGATCACCAACTCACCCGCAGTCACCTACGAACATGTC
ACCACAGTACAATAGTTCTCCCTACGGAGGGTTTTGCCCGGGTACATCAC
CTTTTCCGGCATACCCAAGACCACCTGGCCCACAGGCAGTCCCCACACAG
TACGGGTCCTACGCCTCATGGCAGGGCGCGCAAGGACAGGGTGGGGGCGC
GGACCCGATCACGTCATGGATGGCTGGGCTTAGCACTCCCCCGCCACCGG
TCACGGCACAGCAAGCCTCAGGCATAATGGGAAGACAAGGATGGAACCCA
GCGCAGGTCATGACTCCTGGACGATCCCAAGGCTCCCCGTTCACTTACGG
GTATCAGGGTAGCGCTCCGTTTCACTCAGCAATATCTCCCTTTCTGGGAG
CGCATTACCAAGGGACGTGGGCGCCTCCGACGCTTACGAGCCGACCGCCC
TGGAACCCGCAGCTAGTATGCCATCACCGGATGGCCGCTATGCTCGCGGA
CGAGTCTGAAACCTTTGGGGAAGAGGAGGAATCACGAGCAGTGACACAGA
AACAGGCAACAGGAGCGTTCGTGTCAGCATGGAGTGACCCGAAGAGTCGC
AAGCACTGGCTGCTCCAGGGGAAACCCCTTTGCCTCATGACCAAAGCCGA
GCTTCAGGCCAACATGGGCGATCAGCTAGCGGTAACAGACAGAGTGGTCA
CCCAGCTCCAGAATATGAGCGGGTTTGACGTGTTGGACTACGTACCGAAG
AGCCTGCACGGGACTCAGGCGGGTCGTGACGTCACACTCCTCGAGAGGTT
TGACATCCTCGCTCGGG
back to top

Coding sequence (CDS) from alignment at D-dichotoma_M_contig105:177816..179132+

>mRNA_D-dichotoma_M_contig105.485.1 ID=mRNA_D-dichotoma_M_contig105.485.1|Name=mRNA_D-dichotoma_M_contig105.485.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1818bp|location=Sequence derived from alignment at D-dichotoma_M_contig105:177816..179132+ (Dictyota dichotoma ODC1387m male)
ATGGCTGAAGAGACGAAGTCAACCCACCCAGACGCACCACGCGTGCCTCA
AGAAAGCTTCAGTGACTCCCACCAGTTCGAGCTAGTGGTACAGCGGCAGC
TGGAATCCCTAGCCAAAGAAAGGAAGGAAGAACGCGCCAGACGGGACCAA
TCGCAGGCGAGATGGGACCAGACGCAAGAGCAAATGCAACAGCTCGCCGC
GGCTCTACAGTCCAGGTCCTTCGACGAGAGTACGAACCCGCCTAGTCCTC
CTCTGGATAATCAGCATACGCAAGAGGCCACAGACAGCACACGGTCTCCC
CCTGCGGATCGATCACCAACTCACCCGCAGTCACCTACGAACATGTCACC
ACAGTACAATAGTTCTCCCTACGGAGGGTTTTGCCCGGGTACATCACCTT
TTCCGGCATACCCAAGACCACCTGGCCCACAGGCAGTCCCCACACAGTAC
GGGTCCTACGCCTCATGGCAGGGCGCGCAAGGACAGGGTGGGGGCGCGGA
CCCGATCACGTCATGGATGGCTGGGCTTAGCACTCCCCCGCCACCGGTCA
CGGCACAGCAAGCCTCAGGCATAATGGGAAGACAAGGATGGAACCCAGCG
CAGGTCATGACTCCTGGACGATCCCAAGGCTCCCCGTTCACTTACGGGTA
TCAGGGTAGCGCTCCGTTTCACTCAGCAATATCTCCCTTTCTGGGAGCGC
ATTACCAAGGGACGTGGGCGCCTCCGACGCTTACGAGCCGACCGCCCTGG
AACCCGCAGCTAGTATGCCATCACCGGATGGCCGCTATGCTCGCGGACGA
GTCTGAAACCTTTGGGGAAGAGGAGGAATCACGAGCAGTGACACAGAAAC
AGGCAACAGGAGCATGGCTGAAGAGACGAAGTCAACCCACCCAGACGCAC
CACGCGTGCCTCAAGAAAGCTTCAGTGACTCCCACCAGTTCGAGCTAGTG
GTACAGCGGCAGCTGGAATCCCTAGCCAAAGAAAGGAAGGAAGAACGCGC
CAGACGGGACCAATCGCAGGCGAGATGGGACCAGACGCAAGAGCAAATGC
AACAGCTCGCCGCGGCTCTACAGTCCAGGTCCTTCGACGAGAGTACGAAC
CCGCCTAGTCCTCCTCTGGATAATCAGCATACGCAAGAGGCCACAGACAG
CACACGGTCTCCCCCTGCGGATCGATCACCAACTCACCCGCAGTCACCTA
CGAACATGTCACCACAGTACAATAGTTCTCCCTACGGAGGGTTTTGCCCG
GGTACATCACCTTTTCCGGCATACCCAAGACCACCTGGCCCACAGGCAGT
CCCCACACAGTACGGGTCCTACGCCTCATGGCAGGGCGCGCAAGGACAGG
GTGGGGGCGCGGACCCGATCACGTCATGGATGGCTGGGCTTAGCACTCCC
CCGCCACCGGTCACGGCACAGCAAGCCTCAGGCATAATGGGAAGACAAGG
ATGGAACCCAGCGCAGGTCATGACTCCTGGACGATCCCAAGGCTCCCCGT
TCACTTACGGGTATCAGGGTAGCGCTCCGTTTCACTCAGCAATATCTCCC
TTTCTGGGAGCGCATTACCAAGGGACGTGGGCGCCTCCGACGCTTACGAG
CCGACCGCCCTGGAACCCGCAGCTAGTATGCCATCACCGGATGGCCGCTA
TGCTCGCGGACGAGTCTGAAACCTTTGGGGAAGAGGAGGAATCACGAGCA
GTGACACAGAAACAGGCAACAGGAGCAGTCGCAAGCACTGGCTGCTCCAG
GGGAAACCCCTTTGCCTCATGAAGTCGCAAGCACTGGCTGCTCCAGGGGA
AACCCCTTTGCCTCATGA
back to top