mRNA_D-dichotoma_M_contig105.482.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig105.482.1
Unique NamemRNA_D-dichotoma_M_contig105.482.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig105.482.1 vs. uniprot
Match: A0A6H5K1Z6_9PHAE (RRF domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K1Z6_9PHAE)

HSP 1 Score: 288 bits (736), Expect = 6.450e-91
Identity = 152/239 (63.60%), Postives = 187/239 (78.24%), Query Frame = 3 
Query:  312 GLQPTLLMDLLGQTRLKHGSKKGK-----------GSRGDKGGRDRAEDDGEGTLDDIAGIPETKARYDRVLEGLKTEFQGLRGGKPDPGMLDHVEVDSYGSTSPLSSVAQASLKGPQLMVLTLYDPGLMKAVEEAVRECGMGLNPCVEGQGQVRVPLPKVTKESRDALAKVAAKHTEKAKVVMRGIRHKVLDQVKKKKDLFPEDEVHRRLKEIDTCTQEAEADASKLLERKKSEIMGV 995
            G Q      L+GQ RLKHG KKG             S  D  G D AE     +LDDIAGIPE+KAR+D+VL+GL   FQGLRGGK DPGMLD+V+V+SYGS + L+SVAQAS+KGPQL++L++YDPG+ KA+E+AVRECGMGLNP  EGQGQV VP+PK TKESR+A+AKVAAKH EK+KVV+RGIRHK+LDQ+KKKKD FPED+VH R+KEID CT++AEA  + +LE+KK+EI+ V
Sbjct:   68 GRQQDGCASLIGQIRLKHGGKKGNXXXXXXXXSAPSSTAD--GEDVAE-----SLDDIAGIPESKARFDKVLQGLTRNFQGLRGGKTDPGMLDNVKVESYGSMTNLASVAQASMKGPQLIILSVYDPGMTKAIEDAVRECGMGLNPYSEGQGQVHVPIPKPTKESREAVAKVAAKHAEKSKVVVRGIRHKILDQIKKKKDSFPEDDVHMRIKEIDKCTKDAEAGIASMLEKKKAEILTV 299
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BLAST of mRNA_D-dichotoma_M_contig105.482.1 vs. uniprot
Match: A0A836CM55_9STRA (Ribosome recycling factor domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM55_9STRA)

HSP 1 Score: 187 bits (475), Expect = 1.220e-51
Identity = 105/196 (53.57%), Postives = 128/196 (65.31%), Query Frame = 3 
Query:  438 TLDDIAGIPETKARYDRVLEGLKTEFQGLRGGKPDPGMLDHVEVDSYGSTSPLSSVAQASLKGPQLMVLTLYDPGLMKAVEEAVRECGMGLNPCVEGQG----------QVRVPLPKVTKESRDALAKVAAKHTEKAKVVMRGIRHKVLDQVKKKKDLFPEDEVHRRLKEIDTCTQEAEADASKLLERKKSEIMGV 995
            T+DD A +    AR DRVLEGLK +   LRGG+ DP M DH+ V SYG   PLSSVAQ S KGPQL+VLT YDP    AV  AVR+ GM LNP ++G             V VP+PK++ E+R++L KVA K TEKAKV MRGIRHKVL+++KK K  F ED+VHRR KEIDT     EA  +  L+ KK +I+  
Sbjct:  140 TVDDCAPLDALSARLDRVLEGLKKDLAVLRGGRVDPAMFDHLTVHSYGQEGPLSSVAQVSAKGPQLLVLTCYDPATAPAVVVAVRDSGMNLNPQLDGNKGGAQRREACTPVLVPIPKMSHETRESLVKVANKATEKAKVHMRGIRHKVLERLKKHKANFSEDDVHRRHKEIDTKIAAMEAKCAAALDAKKKDILSA 335
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BLAST of mRNA_D-dichotoma_M_contig105.482.1 vs. uniprot
Match: A0A7S1U0D6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U0D6_9STRA)

HSP 1 Score: 145 bits (366), Expect = 3.260e-37
Identity = 84/210 (40.00%), Postives = 125/210 (59.52%), Query Frame = 3 
Query:  369 SKKGKGSRGDKGGRDRAEDDG-EGTLDDIAGIPETKARYDRVLEGLKTEFQGLRGGKPDPGMLDHVEVDSYGSTSPLSSVAQASLKGPQLMVLTLYDPGLMKAVEEAVRECGMGLNPCVEGQGQVRVPLPKVTKESRDALAKVAAKHTEKAKVVMRGIRHKVLDQVKKKKDL--FPEDEVHRRLKEIDTCTQEAEADASKLLERKKSEIM 989
            +KKGKG  G K   D A D+   G L  +    E   +   V + LK  F G+RGG+P+PGM DHV VD+YGS +P+++VAQ +LK P+   +T++DP + + V EA+   GM LNP VEG   + VP+PK+T+E R+ +AK A K  E AK  +R +R   LD+VK  ++L    ED+ HR  + +D  T+        L + K++E++
Sbjct:    8 AKKGKGGGGGK--TDAALDEAISGVLPTVLDFAELSEKASAVEDKLKENFAGIRGGRPEPGMFDHVMVDAYGSPTPMNAVAQVALKTPKAATVTVFDPSVAQNVAEALEGAGMDLNPQVEGN-TITVPIPKLTRELREDMAKAAGKQLETAKQALRRLRKSALDEVKDNEELGELSEDDAHREKELVDALTKRGSERLEALHDAKRAEVL 214
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BLAST of mRNA_D-dichotoma_M_contig105.482.1 vs. uniprot
Match: K9HKD2_9PROT (Ribosome-recycling factor n=2 Tax=Caenispirillum TaxID=414051 RepID=K9HKD2_9PROT)

HSP 1 Score: 140 bits (354), Expect = 8.560e-36
Identity = 77/177 (43.50%), Postives = 113/177 (63.84%), Query Frame = 3 
Query:  471 KARYDRVLEGLKTEFQGLRGGKPDPGMLDHVEVDSYGSTSPLSSVAQASLKGPQLMVLTLYDPGLMKAVEEAVRECGMGLNPCVEGQGQVRVPLPKVTKESRDALAKVAAKHTEKAKVVMRGIRHKVLDQVKK--KKDLFPEDEVHRRLKEIDTCTQEAEADASKLLERKKSEIMGV 995
            K R D+ +E LK EF GLR G+    +LD V V++YGST PL+ VA  S+  P+++V++++D  ++KAVE+A+R  G+GLNP  EGQ  +RVP+P +T+E R  L KVAAK+ E A+V +R +R   +DQ+KK  K     +DE     KE+   T E  +   + L+ K+ EIM V
Sbjct:   16 KHRMDQAVEVLKKEFAGLRTGRAHTSLLDPVVVEAYGSTMPLNQVANVSVPEPRMLVVSVWDRSMIKAVEKAIRNAGLGLNPAAEGQ-TIRVPIPPLTEERRAELTKVAAKYGENARVAVRNVRRDGMDQLKKMEKDGTISQDEQRAHEKEVQQLTDETISTIDETLKHKEQEIMQV 191
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BLAST of mRNA_D-dichotoma_M_contig105.482.1 vs. uniprot
Match: A0A286H2T3_9PROT (Ribosome-recycling factor n=2 Tax=Caenispirillum bisanense TaxID=414052 RepID=A0A286H2T3_9PROT)

HSP 1 Score: 140 bits (353), Expect = 1.190e-35
Identity = 76/177 (42.94%), Postives = 114/177 (64.41%), Query Frame = 3 
Query:  471 KARYDRVLEGLKTEFQGLRGGKPDPGMLDHVEVDSYGSTSPLSSVAQASLKGPQLMVLTLYDPGLMKAVEEAVRECGMGLNPCVEGQGQVRVPLPKVTKESRDALAKVAAKHTEKAKVVMRGIRHKVLDQVKK--KKDLFPEDEVHRRLKEIDTCTQEAEADASKLLERKKSEIMGV 995
            K R ++ +E LK EF GLR G+    +LD V VD+YGS+ PL+ VA  S+  P+++V++++D  + KAVE+A+R+ G+GLNP  EGQ  +RVP+P +T+E R  L+KVAAK+TE A+V +R +R   +D +KK  K  +  +DE      E+   T EA     + L+ K+ EIM V
Sbjct:   16 KHRMEQTVEVLKKEFAGLRTGRAHTSLLDPVVVDAYGSSMPLNQVANVSVPEPRMLVVSVWDRSMTKAVEKAIRDAGLGLNPAAEGQS-IRVPIPPLTEERRTELSKVAAKYTEAARVAIRNVRRDGMDSLKKMEKDGVISQDEHRTHSTEVQQLTDEAIKTVDETLKHKEQEIMQV 191
[Close]
BLAST of mRNA_D-dichotoma_M_contig105.482.1 vs. uniprot
Match: A0A6V1LRG3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1LRG3_HETAK)

HSP 1 Score: 142 bits (359), Expect = 1.650e-35
Identity = 75/184 (40.76%), Postives = 112/184 (60.87%), Query Frame = 3 
Query:  453 AGIPETKARYDRVLEGLKTEFQGLRGGKPDPGMLDHVEVDSYGSTSPLSSVAQASLKGPQLMVLTLYDPGLMKAVEEAVRECGMGLNPCVEGQGQVRVPLPKVTKESRDALAKVAAKHTEKAKVVMRGIRHKVLDQVKKKKDLFPEDEVHRRLKEIDTCTQEAEADASKLLERKKSEIMGV*SS 1004
            A + +   +  R ++ L  + + LR G+ DP M DH++VD+YG ++PLS+VA  + +GPQL+V+ +YDP L  AV+ A+RECGMGLNP     G + VP+PK +KE R+ LA++A +  EK K  +R  R   +D+ KK     PEDE  R +KEID          S L++ K+ E++   SS
Sbjct:   95 ADLEQVDQKMGRYIQALDKDLRTLRAGRADPAMFDHLQVDAYGQSAPLSAVADVAPRGPQLLVVNVYDPQLKGAVDTAIRECGMGLNPQALEGGALSVPVPKTSKEKREKLARMAKQQGEKTKQNVRNARRSAIDETKKAG--LPEDESKRLVKEIDALCDAKLKAVSDLIDGKQKELLNASSS 276
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BLAST of mRNA_D-dichotoma_M_contig105.482.1 vs. uniprot
Match: A0A4P7WB35_9PROT (Ribosome-recycling factor n=2 Tax=Acetobacteraceae bacterium TaxID=1909293 RepID=A0A4P7WB35_9PROT)

HSP 1 Score: 136 bits (342), Expect = 4.170e-34
Identity = 76/189 (40.21%), Postives = 117/189 (61.90%), Query Frame = 3 
Query:  435 GTLDDIAGIPETKARYDRVLEGLKTEFQGLRGGKPDPGMLDHVEVDSYGSTSPLSSVAQASLKGPQLMVLTLYDPGLMKAVEEAVRECGMGLNPCVEGQGQVRVPLPKVTKESRDALAKVAAKHTEKAKVVMRGIRHKVLDQVK--KKKDLFPEDEVHRRLKEIDTCTQEAEADASKLLERKKSEIMGV 995
            G  DD+  + E   R D+V   LK EF GLR G+  P +L+ V V++YGS SPL+ VA  ++  P ++ ++++D GL++AVE+A+R  G+GLNP  EGQ  VRVP+P++T E R+ LAK A ++TE A++ +R  R   + + K  +K+    EDE+   +  I   T    +D  +LL +K+SEI  V
Sbjct:    3 GNFDDL--LKEIHERMDKVKVNLKKEFSGLRSGRATPALLEPVRVEAYGSLSPLTQVASIAVPEPSMLSVSVWDKGLVQAVEKAIRNSGLGLNPASEGQ-TVRVPVPQLTGERREELAKAAGRYTENARIAVRNARRDGMTKAKAEEKEGSISEDELKNWIDSIQKLTDSFISDLDELLSKKESEIKQV 188
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BLAST of mRNA_D-dichotoma_M_contig105.482.1 vs. uniprot
Match: A0A4D9DA72_9STRA (RRF domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DA72_9STRA)

HSP 1 Score: 137 bits (345), Expect = 1.130e-33
Identity = 76/183 (41.53%), Postives = 116/183 (63.39%), Query Frame = 3 
Query:  450 IAGIPETKARYDRVLEGLKTEFQGLRGGKPDPGMLDHVEVDSYGSTSPLSSVAQASLKGPQLMVLTLYDPGLMKAVEEAVRECGMGLNPCVEGQGQVRVPLPKVTKESRDALAKVAAKHTEKAKVVMRGIRHKVLDQVKKK-KDLFPEDEVHRRLKEIDTCTQEAEADASKLLERKKSEIMGV 995
            +  + + +++ +RVL GL+ EF G+RGG+PD GM DH+ V +YG  +PLS VAQ ++K P L V+ +YDP ++  V EAV+   + LNP V+G   V VPLPK + E R    K+ ++ TE A+  +R IR + +D++K + K+   ED+V R  K I++ T+E      + LE+KK EIM V
Sbjct:   80 LVDLDKLQSKMERVLRGLEKEFSGVRGGRPDAGMFDHLYVQAYGKATPLSDVAQVTIKSPTLAVIHVYDPDILHPVHEAVQASKLELNPRVDGN-VVNVPLPKPSAEMRQGYVKLVSQCTETARQNLRKIRREGMDRLKGEGKEGVGEDDVRRSSKLIESMTEEWVKRVGEALEKKKKEIMTV 261
[Close]
BLAST of mRNA_D-dichotoma_M_contig105.482.1 vs. uniprot
Match: K8YZB1_NANGC (Ribosome recycling factor n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YZB1_NANGC)

HSP 1 Score: 138 bits (347), Expect = 1.290e-33
Identity = 76/183 (41.53%), Postives = 116/183 (63.39%), Query Frame = 3 
Query:  450 IAGIPETKARYDRVLEGLKTEFQGLRGGKPDPGMLDHVEVDSYGSTSPLSSVAQASLKGPQLMVLTLYDPGLMKAVEEAVRECGMGLNPCVEGQGQVRVPLPKVTKESRDALAKVAAKHTEKAKVVMRGIRHKVLDQVKKK-KDLFPEDEVHRRLKEIDTCTQEAEADASKLLERKKSEIMGV 995
            +  + + +++ +RVL GL+ EF G+RGG+PD GM DH+ V +YG  +PLS VAQ ++K P L V+ +YDP ++  V EAV+   + LNP V+G   V VPLPK + E R    K+ ++ TE A+  +R IR + +D++K + K+   ED+V R  K I++ T+E      + LE+KK EIM V
Sbjct:  112 LVDLDKLQSKMERVLRGLEKEFSGVRGGRPDAGMFDHLHVQAYGKATPLSDVAQVTIKSPTLAVIHVYDPDILHPVHEAVQASKLELNPRVDGN-VVNVPLPKPSAEMRQGYVKLVSQCTETARQNLRKIRREGMDRLKGEGKEGVGEDDVRRSSKLIESMTEEWVKRVGEALEKKKKEIMTV 293
[Close]
BLAST of mRNA_D-dichotoma_M_contig105.482.1 vs. uniprot
Match: A0A437MJH9_9PROT (Ribosome-recycling factor n=2 Tax=Rhodovarius TaxID=268408 RepID=A0A437MJH9_9PROT)

HSP 1 Score: 133 bits (335), Expect = 4.460e-33
Identity = 74/177 (41.81%), Postives = 106/177 (59.89%), Query Frame = 3 
Query:  471 KARYDRVLEGLKTEFQGLRGGKPDPGMLDHVEVDSYGSTSPLSSVAQASLKGPQLMVLTLYDPGLMKAVEEAVRECGMGLNPCVEGQGQVRVPLPKVTKESRDALAKVAAKHTEKAKVVMRGIRHKVLDQVK--KKKDLFPEDEVHRRLKEIDTCTQEAEADASKLLERKKSEIMGV 995
            + R D  +E LK EFQGLR G+  P +L+ + V+ YG+ SPL+ VA  S+ GP L+ + +YD G +KAVE A+R+ G+ LNP  EGQ  +RVPLP +T E R+ L+K AAK+ E AK+ +R +R   ++Q +  KKK    ED+  R  KE+ T T +           K  +I  V
Sbjct:   15 RRRMDSTMETLKKEFQGLRTGRASPALLEPIRVEIYGAVSPLNQVANVSVGGPGLLNVQVYDRGQVKAVEIAIRDSGLNLNPQTEGQ-TIRVPLPPLTTERRNELSKQAAKYAEGAKIAVRNVRRDGMEQAQGWKKKSEISEDDAKRLEKEVQTLTDDYVKKVDAAFAEKDKDIKSV 190
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig105.482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1Z6_9PHAE6.450e-9163.60RRF domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CM55_9STRA1.220e-5153.57Ribosome recycling factor domain-containing protei... [more]
A0A7S1U0D6_9STRA3.260e-3740.00Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
K9HKD2_9PROT8.560e-3643.50Ribosome-recycling factor n=2 Tax=Caenispirillum T... [more]
A0A286H2T3_9PROT1.190e-3542.94Ribosome-recycling factor n=2 Tax=Caenispirillum b... [more]
A0A6V1LRG3_HETAK1.650e-3540.76Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4P7WB35_9PROT4.170e-3440.21Ribosome-recycling factor n=2 Tax=Acetobacteraceae... [more]
A0A4D9DA72_9STRA1.130e-3341.53RRF domain-containing protein n=1 Tax=Nannochlorop... [more]
K8YZB1_NANGC1.290e-3341.53Ribosome recycling factor n=2 Tax=Nannochloropsis ... [more]
A0A437MJH9_9PROT4.460e-3341.81Ribosome-recycling factor n=2 Tax=Rhodovarius TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig105contigD-dichotoma_M_contig105:113383..117658 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score263.5
Seed ortholog evalue1.2e-67
Seed eggNOG ortholog2880.D7G7A5
Preferred nameRRF1
KEGG koko:K02838,ko:K03283
KEGG TC1.A.33.1
KEGG Pathwayko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG ModuleM00353,M00355
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0006996,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022411,GO:0032543,GO:0032790,GO:0032984,GO:0032988,GO:0034641,GO:0034645,GO:0043021,GO:0043023,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0070126,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:0140053,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008
EggNOG free text desc.ribosomal large subunit binding
EggNOG OGsCOG0233@1,KOG4759@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009,ko03009,ko03012,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionRibosome recycling factor
Ec32 orthologEc-04_003560.1
Exons7
Model size1442
Cds size858
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927541.6286767-UTR-D-dichotoma_M_contig105:113382..1135221622927541.6286767-UTR-D-dichotoma_M_contig105:113382..113522Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig105 113383..113522 +
1690798026.7847362-UTR-D-dichotoma_M_contig105:113382..1135221690798026.7847362-UTR-D-dichotoma_M_contig105:113382..113522Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig105 113383..113522 +
1622927541.7352927-UTR-D-dichotoma_M_contig105:117214..1176581622927541.7352927-UTR-D-dichotoma_M_contig105:117214..117658Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig105 117215..117658 +
1690798026.8757057-UTR-D-dichotoma_M_contig105:117214..1176581690798026.8757057-UTR-D-dichotoma_M_contig105:117214..117658Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig105 117215..117658 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927541.6430647-CDS-D-dichotoma_M_contig105:113522..1137601622927541.6430647-CDS-D-dichotoma_M_contig105:113522..113760Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig105 113523..113760 +
1690798026.8016734-CDS-D-dichotoma_M_contig105:113522..1137601690798026.8016734-CDS-D-dichotoma_M_contig105:113522..113760Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig105 113523..113760 +
1622927541.6571739-CDS-D-dichotoma_M_contig105:114485..1146041622927541.6571739-CDS-D-dichotoma_M_contig105:114485..114604Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig105 114486..114604 +
1690798026.8103232-CDS-D-dichotoma_M_contig105:114485..1146041690798026.8103232-CDS-D-dichotoma_M_contig105:114485..114604Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig105 114486..114604 +
1622927541.6713285-CDS-D-dichotoma_M_contig105:115281..1153301622927541.6713285-CDS-D-dichotoma_M_contig105:115281..115330Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig105 115282..115330 +
1690798026.8196187-CDS-D-dichotoma_M_contig105:115281..1153301690798026.8196187-CDS-D-dichotoma_M_contig105:115281..115330Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig105 115282..115330 +
1622927541.68248-CDS-D-dichotoma_M_contig105:115772..1158881622927541.68248-CDS-D-dichotoma_M_contig105:115772..115888Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig105 115773..115888 +
1690798026.837307-CDS-D-dichotoma_M_contig105:115772..1158881690798026.837307-CDS-D-dichotoma_M_contig105:115772..115888Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig105 115773..115888 +
1622927541.694595-CDS-D-dichotoma_M_contig105:116198..1163511622927541.694595-CDS-D-dichotoma_M_contig105:116198..116351Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig105 116199..116351 +
1690798026.847512-CDS-D-dichotoma_M_contig105:116198..1163511690798026.847512-CDS-D-dichotoma_M_contig105:116198..116351Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig105 116199..116351 +
1622927541.7087388-CDS-D-dichotoma_M_contig105:116577..1166791622927541.7087388-CDS-D-dichotoma_M_contig105:116577..116679Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig105 116578..116679 +
1690798026.8570514-CDS-D-dichotoma_M_contig105:116577..1166791690798026.8570514-CDS-D-dichotoma_M_contig105:116577..116679Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig105 116578..116679 +
1622927541.7223923-CDS-D-dichotoma_M_contig105:117133..1172141622927541.7223923-CDS-D-dichotoma_M_contig105:117133..117214Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig105 117134..117214 +
1690798026.8662431-CDS-D-dichotoma_M_contig105:117133..1172141690798026.8662431-CDS-D-dichotoma_M_contig105:117133..117214Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig105 117134..117214 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig105.482.1prot_D-dichotoma_M_contig105.482.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig105 113523..117214 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig105.482.1

>prot_D-dichotoma_M_contig105.482.1 ID=prot_D-dichotoma_M_contig105.482.1|Name=mRNA_D-dichotoma_M_contig105.482.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=286bp
MIARLSCRQLLRRTTEHSPVLALARRCLWIGEENLRCSPRERLAGATTLA
CLPWTHAGLQPTLLMDLLGQTRLKHGSKKGKGSRGDKGGRDRAEDDGEGT
LDDIAGIPETKARYDRVLEGLKTEFQGLRGGKPDPGMLDHVEVDSYGSTS
PLSSVAQASLKGPQLMVLTLYDPGLMKAVEEAVRECGMGLNPCVEGQGQV
RVPLPKVTKESRDALAKVAAKHTEKAKVVMRGIRHKVLDQVKKKKDLFPE
DEVHRRLKEIDTCTQEAEADASKLLERKKSEIMGV*
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mRNA from alignment at D-dichotoma_M_contig105:113383..117658+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig105.482.1 ID=mRNA_D-dichotoma_M_contig105.482.1|Name=mRNA_D-dichotoma_M_contig105.482.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=4276bp|location=Sequence derived from alignment at D-dichotoma_M_contig105:113383..117658+ (Dictyota dichotoma ODC1387m male)
TGCAACCGGGGACATGTCCTGTATGGCCACTGCATCTGAAAGTCGTGTGA
AATACCAAGCATAAGTGATACCTGCTGCAATTCGTGTTCCAAACTCTAGG
ATAAATCCTGTAGGTTAAGGTTCATTGGATCATACTACTCATGATCGCAC
GGTTATCCTGCCGTCAGCTTTTGCGGAGAACGACAGAGCACAGCCCCGTG
CTTGCTCTAGCTCGACGTTGTCTATGGATCGGCGAAGAAAACCTACGATG
CTCTCCCCGAGAAAGGCTTGCGGGTGCGACGACTCTTGCATGTCTCCCGT
GGACCCATGCTGGCCTCCAACCAACCTTGTTAATGGACCTGTTAGGTCAG
ACAAGATTGAAGCATGGTTCAAAGAAAGGTGTGAAAAACTCCGCAGGCGC
TTCAACCTCGGTTCCCCCTCATGCACCTGACACCGCCCTCCTGGTCCCGG
CGAAGGGTTGAGAGAAGTGATCTTTGTGTTGTGGTTTTTCTAGCTACGAG
CCAGGTGCTCGAATGGATGGCTTTTCTGCAGGCTTGGGGCTACGTCACCA
AAATGATTATGTTTGGGATATCTTGTCGATTTCGGGTGCGACCCTTGAGC
GAGGTTGGGTCACGCAACAAGTGAACGCCTCATATCCTCGACTGCTTCGT
AGTGCACTCATACATGTATCAACTGTCGAAAGCTTGGAGAAATCATGGTC
CATTCAACGATGGTGCGCAAAACTTTCCACTTCATTCGGCATCTCACTGA
AACAAATAGTGCCCCAAGTCTGTGCGTTCACGTCCGTTCCTCAGTCCTGT
CCAGTCCAACATTTGTCATCGAGGATGGCATGAATGTTGCGCGCTGCAAC
TTCGAGGGACAACGCAGCATGATCCCGAGGACAACATGCTAAGCCACGAC
AACTCGCGCCACCAGTTTGGAGTAGGAGACACATTTCTGTCAGCTCCTTA
TGATACTGTTTCCTGAACCTGTGACACAATTCTTGGGTCATTGAATATCA
CATTCCCAGCCCGATCTGCGGCGAGGTGCAGCAGTAGGTGACTGCGACCA
TTCTTCTTGAGGTGCGGACTGAACGACGTCTTAAACCTTGTTGGATCTTT
CAGGGAAGGGAAGCAGGGGGGATAAAGGAGGGCGAGATAGAGCAGAAGAT
GACGGGGAGGGGACTCTCGATGATATCGCCGGTATACCTGAAACGAAGGC
GCGATACGATCGTGTGTTAGAGGTGGGTGGATCTACAGCTTTTTTTAGTG
GGACGCATGATCTCCGTCTTCCCTTTCCGTGTGTAACGAATCTTTATGAG
CCTCCCGTATCATTCCTTTTTCAACGAAGAAGATCGATCCTGAACCCAGC
TAGTCTGAGAGCCATCGCATCCGGGTTCTTGGTAGTAATGTCGGAGGAGC
CCAACGTAAACGCTCGAGCTAGCCTCCTCTTAAACACGATCACGCGCAAC
ACCCGCTATGCGTGATTCATAGCTTCGAAGGAACGTGCGATCATGACCTA
CCCATCTCGAATGAAACCGTGTACCGTCTCACCATCCTCTGTAGGAGTGG
GTTGTGGGGGGGCTTTGGATGCACAGGCGCCCCTTGGCCATGGGCGAGAT
TCGGTTAAAGGTATCTGAACAAATGAGTCCCGCCTTGGTCCAGCGTTGTC
TTCAATTTTGTATTGTACTGTAATCCGCAGAAGATGTTGCTCTCGTCTCT
TACGGAATGACGACCGTAGCTTGTTCTTTGGACGTAGTCAAACGTCCCAT
ATACCGCGGGTCTGATGGAGGGGAGCATGGGGTAGTGTGCTGTTGTCGAG
TGCACCTCGAATAGCTCTTGAAGCGCGGGGAGACAAAAGGCAGTCACTGG
ATCCTCACTGGCAATCGTGACGTGTCGCCTTTCGCTATCTCGGGTTCAGG
GACTCAAGACCGAGTTCCAAGGGTTGAGAGGCGGGAAGCCAGATCCCGGT
GAGTGACAGAAATGCAATTGAGCGTCTCAGACGAGACGGTAGGAAATGGA
ACGTGGAACGGAACGCCCCGATGATACACTCCGAAAGCCTCGCGACGACT
CTCTCGCGTCAGGCATGCTGTTCGGAGCTGCCAGATGAAAAAAAGGACTG
CGATAATGTGTAGTGTTTGCTGCCTTGCGCTTCATGATCGCCGTTGCACC
CCTCATCTGGTGCGTGATGAGGCTCCTCGGCCGGCACGCTTGGTTCCCTC
GCGGAGGGGTAACGAATGACTTCTTTTCCGGGATCTATGTTTTCGTGGTC
CGTGCATTGAGCCACGTGATGCTCGACCTGAAGGCACGTATTACATGATC
GAGAGGTCGCGTTGCGGTATGCATCGTTCATGGGGCGGCGTGAGCGTGAT
GAAACATGGTGTGCTTGCTCCGTGCGCAACCTACGCGCAGGGATGTTGGA
TCATGTCGAGGTGGATTCTTACGGTTCCACGAGTCCTCTCTCTTCTGTGG
CGCAGGCGTCCCTTAAGGGACCGCAGCTCATGGTCCTGACCCTCTACGAC
CCCGGGGTAAGCGTCGTGAGCCCGGAAGGAGAGAAAGAGGGAGGATACTC
TTTTCTCGAAATATGTCAGACTTGGACTAGAGTTCTGGCACTCGCCTCCC
GCGGCACTTTAACGTGGCGGCGCAGCTAGTGACGTGAACAGAGCTCGACG
AAGTACGGCGTTAGGCGTGTTTGCATGGGGGTAGGACGGTTGTTGGCTTG
ACGGGAAAGGGGGCAGCTCCATGATATACGTTGAGTTGAGCGTGAGGCCT
TTCGGACGCATGGTGCCCGGCTGAACTCCTTCGACTTTTTCTTCGATTTG
CTGTCGTCAATGTCAGTTGATGAAGGCCGTAGAAGAGGCGGTGCGCGAGT
GCGGCATGGGTCTCAACCCTTGCGTCGAAGGGCAGGGGCAGGTTAGGGTG
CCTCTCCCGAAGGTAACCAAGGAGTCACGAGATGCGTTGGCGAAGGTCGC
CGCGAAGCACACGGAAAAGGTGGGAGACCTGCCAGGAGTATTCGCAAGAA
AGGTCGTTGGGAATGCTCTCGACCGCTGGTATTCGTTATCCGGTTGTGTC
CCTGCCTCTTGCGGAGTCTAAGGCGAACTCTTTCTGGAATAAAAGCGTCT
GCGTCAAAGGCATTCAAGACCAATGTGACACAATGCGATGGGGTATCACT
GATGCGGGTGAGCTTTTTGTCATTTGTGCATCCCCCGGGACTTAGGCGAA
GGTTGTTATGCGAGGGATCCGTCACAAGGTACTGGATCAAGTAAAAAAGA
AGAAGGACCTCTTTCCTGAGGACGAGGTTCATCGCCGACTAAAGGAGGTG
GGTCGGTCAGTGTAAGCACCACATTAGCTCATGGGTTGTGTTCCCGGGCT
AGCTAGCTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
ATTGTGGTTGGTTCTAGCTGAACCGAATGGACAGTAGCGATGCCGAAGGT
CGCAATGCCGCACCCCGGGTGAGACAAAGAGCGGCCGTCACGATCCGCAA
GCTATGAACGGGCGCTCACATTAGGCTACCTTTGGCAAGTCTTGACGTCG
TGCAACGTGATGCTTTGAACGATATCCTCGAACCGAATCCAGTAGCCTTT
TCGGACTCCTTTTGAGGGATTGGGGAAATATGCTGTCGTCATGCTAGGTT
CGTAACAATCTGTGGGTAAGACCGTCTGCCCTTGTCCTGGGATCATGCTG
TCTGAAAAAGTGTCCCCGAACCCATGTTTCTGATACCACGTCGGAAAACA
GATCGACACGTGTACACAGGAGGCTGAGGCGGACGCCAGCAAGCTCCTGG
AGAGGAAGAAGTCCGAGATTATGGGGGTGTAGAGCTCTACATATAGAGCT
GAAGGATAAACCCAACGTCATGGAAGTACATGCAGCAAAAGGGCTTGGAG
CGTACAGAGAAATTCTAGCGATGAGCGCATCTTCAGTATTCCCAGGGCGT
GCTCTCACTTACGTCGGATATCTAAGTTTCGAATTGTCGACCAAGACGTT
TAACGTGGCAGGCTCGGCTTGAGTTTGCATTTTTAGTGTGGTCCGGATGG
GTTCACTTCAAGAGTCGTCAGCTCGTTAGTTGCGAGTGGATCCAGGTGGT
TCCGTGAACATGCATATATGGAGTCATCGATGCTACACTAATGTTGTCAC
GAGTTGTTGATGTCTCTACTGTATAAGCTGTTGTTTTGTTGGGATAAAGG
TGATGAGATGTAAGTAAACTACTTGTCACCCAAGGGGAATGACCAATTCA
GGCCTTGTTCACGAGCAAAATTCGCG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig105:113383..117658+

>mRNA_D-dichotoma_M_contig105.482.1 ID=mRNA_D-dichotoma_M_contig105.482.1|Name=mRNA_D-dichotoma_M_contig105.482.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1716bp|location=Sequence derived from alignment at D-dichotoma_M_contig105:113383..117658+ (Dictyota dichotoma ODC1387m male)
ATGATCGCACGGTTATCCTGCCGTCAGCTTTTGCGGAGAACGACAGAGCA
CAGCCCCGTGCTTGCTCTAGCTCGACGTTGTCTATGGATCGGCGAAGAAA
ACCTACGATGCTCTCCCCGAGAAAGGCTTGCGGGTGCGACGACTCTTGCA
TGTCTCCCGTGGACCCATGCTGGCCTCCAACCAACCTTGTTAATGGACCT
GTTAGGTCAGACAAGATTGAAGCATGGTTCAAAGAAAGATGATCGCACGG
TTATCCTGCCGTCAGCTTTTGCGGAGAACGACAGAGCACAGCCCCGTGCT
TGCTCTAGCTCGACGTTGTCTATGGATCGGCGAAGAAAACCTACGATGCT
CTCCCCGAGAAAGGCTTGCGGGTGCGACGACTCTTGCATGTCTCCCGTGG
ACCCATGCTGGCCTCCAACCAACCTTGTTAATGGACCTGTTAGGTCAGAC
AAGATTGAAGCATGGTTCAAAGAAAGGGAAGGGAAGCAGGGGGGATAAAG
GAGGGCGAGATAGAGCAGAAGATGACGGGGAGGGGACTCTCGATGATATC
GCCGGTATACCTGAAACGAAGGCGCGATACGATCGTGTGTTAGAGGGAAG
GGAAGCAGGGGGGATAAAGGAGGGCGAGATAGAGCAGAAGATGACGGGGA
GGGGACTCTCGATGATATCGCCGGTATACCTGAAACGAAGGCGCGATACG
ATCGTGTGTTAGAGGGACTCAAGACCGAGTTCCAAGGGTTGAGAGGCGGG
AAGCCAGATCCCGGGACTCAAGACCGAGTTCCAAGGGTTGAGAGGCGGGA
AGCCAGATCCCGGGATGTTGGATCATGTCGAGGTGGATTCTTACGGTTCC
ACGAGTCCTCTCTCTTCTGTGGCGCAGGCGTCCCTTAAGGGACCGCAGCT
CATGGTCCTGACCCTCTACGACCCCGGGGGATGTTGGATCATGTCGAGGT
GGATTCTTACGGTTCCACGAGTCCTCTCTCTTCTGTGGCGCAGGCGTCCC
TTAAGGGACCGCAGCTCATGGTCCTGACCCTCTACGACCCCGGGTTGATG
AAGGCCGTAGAAGAGGCGGTGCGCGAGTGCGGCATGGGTCTCAACCCTTG
CGTCGAAGGGCAGGGGCAGGTTAGGGTGCCTCTCCCGAAGGTAACCAAGG
AGTCACGAGATGCGTTGGCGAAGGTCGCCGCGAAGCACACGGAAAAGTTG
ATGAAGGCCGTAGAAGAGGCGGTGCGCGAGTGCGGCATGGGTCTCAACCC
TTGCGTCGAAGGGCAGGGGCAGGTTAGGGTGCCTCTCCCGAAGGTAACCA
AGGAGTCACGAGATGCGTTGGCGAAGGTCGCCGCGAAGCACACGGAAAAG
GCGAAGGTTGTTATGCGAGGGATCCGTCACAAGGTACTGGATCAAGTAAA
AAAGAAGAAGGACCTCTTTCCTGAGGACGAGGTTCATCGCCGACTAAAGG
AGGCGAAGGTTGTTATGCGAGGGATCCGTCACAAGGTACTGGATCAAGTA
AAAAAGAAGAAGGACCTCTTTCCTGAGGACGAGGTTCATCGCCGACTAAA
GGAGATCGACACGTGTACACAGGAGGCTGAGGCGGACGCCAGCAAGCTCC
TGGAGAGGAAGAAGTCCGAGATTATGGGGGTGTAGATCGACACGTGTACA
CAGGAGGCTGAGGCGGACGCCAGCAAGCTCCTGGAGAGGAAGAAGTCCGA
GATTATGGGGGTGTAG
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