mRNA_D-dichotoma_M_contig1007.145.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1007.145.1
Unique NamemRNA_D-dichotoma_M_contig1007.145.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
[Close]
BLAST of mRNA_D-dichotoma_M_contig1007.145.1 vs. uniprot
Match: D8LED2_ECTSI (Ig-like protein, group 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED2_ECTSI)

HSP 1 Score: 279 bits (713), Expect = 1.210e-83
Identity = 149/319 (46.71%), Postives = 196/319 (61.44%), Query Frame = 3 
Query:    3 ACNPNPCENGGTCALDPAGGHICTCASGFGGMSCQTDTTISGLAPFYIEQEFVGTWTPQRQAVFESAAARWEQVVTHHPGCGSSAGH-PAGRLLISSSLIEIDGPGNVLGQAGPTMLRLGCSSISIEGVMEFDVDDIASLEAQGIFEGVILHEMGHVLGIGTLWNSAFGSCTNCPPSSA--WGCDATVAVYNDLLQNPGGSEDAIVELDGGPGTACGHFDEDIFVDELMTGLVDL-DMSLSKLTAASLEDIDYVVDPSTVDPYTLPAFRLTAGISRNVSRFDSSETHVPISDIATETEIVVIDENDEVVEVIPSQLVRF 947
            AC+PNPC NGG+C +DP GG+ C+C S +G M C+TD T  G++ F+I  +F+G+WT +R+ VF+SAA RW +V+T  P  G++     AG L I+S+L  IDG    LG AGP      C  IS  G M FD+DDIA +E QG FEGVILHEMGHV+G GTLW    G C++C  +S+  W C     VYND + NP GS   I+EL+GG GT+CGHF E  F DELMTG V    M LSKLT ASL D  YVV P+  D YT+P+ R  +        +  +E+         +T I V +E  E+V+ +  + +RF
Sbjct:  126 ACDPNPCMNGGSCEVDPNGGYTCSCGSSYGAMMCETDVT--GMSEFFITVDFLGSWTDERKGVFQSAANRWSEVLTRIPCSGTNGNRGAAGELTITSTLEPIDGVYGTLGFAGPRGTYSDCRGISYSGEMTFDIDDIAEMERQGTFEGVILHEMGHVIGTGTLW----GECSDCDSTSSAEWKCPLAAQVYNDFMGNPAGSRADIIELEGGTGTSCGHFSESTFKDELMTGYVKAGQMPLSKLTCASLADRGYVVQPAKADSYTVPSRRDPSARQGETKTYKLAES-------TDDTTIGVCNEEGEIVDTMQGKRIRF 431
[Close]
BLAST of mRNA_D-dichotoma_M_contig1007.145.1 vs. uniprot
Match: D8LED3_ECTSI (WSC domain protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LED3_ECTSI)

HSP 1 Score: 286 bits (731), Expect = 3.040e-83
Identity = 153/319 (47.96%), Postives = 203/319 (63.64%), Query Frame = 3 
Query:    3 ACNPNPCENGGTCALDPAGGHICTCASGFGGMSCQTDTTISGLAPFYIEQEFVGTWTPQRQAVFESAAARWEQVVTHHPGCGSSA-GHPAGRLLISSSLIEIDGPGNVLGQAGPTMLRLGCSSISIEGVMEFDVDDIASLEAQGIFEGVILHEMGHVLGIGTLWNSAFGSCTNCPP--SSAWGCDATVAVYNDLLQNPGGSEDAIVELDGGPGTACGHFDEDIFVDELMTGLVDLD-MSLSKLTAASLEDIDYVVDPSTVDPYTLPAFRLTAGISRNVSRFDSSETHVPISDIATETEIVVIDENDEVVEVIPSQLVRF 947
            ACNPNPC NGG+C +DP GG+ C+C S +GGM C+TD T  G++ F+I  +F+GTW+ +R+ VF+ AA RW +++TH P  G++  G  AG L I+S+L  IDG    LG AGP      C  IS  G M FD+DDIA +E QG FEGVILHEMGHV+G GTLW    G C++C    S+ W C     VYND + NP GS   I+EL+GG GT+CGHF E  F DELMTG V+   M LSKLT ASL D  YVV  S  D YT+P+ R  +      +R D ++T+  +++   +T I V +E  E+V+ +  + +RF
Sbjct:  400 ACNPNPCMNGGSCEVDPNGGYTCSCGSSYGGMMCETDVT--GMSEFFITVDFLGTWSDERKGVFQRAANRWSEILTHIPCSGTNGNGGAAGELTITSTLEPIDGVYGTLGFAGPRGTYNDCRGISYSGEMTFDIDDIAEMERQGTFEGVILHEMGHVIGTGTLW----GECSDCDSTGSAEWKCPLAAQVYNDFMGNPAGSRADIIELEGGTGTSCGHFSESTFEDELMTGFVNAGTMPLSKLTCASLADQGYVVQSSKADSYTVPSRRDPS------ARQDETKTY-KLAESTDDTTIDVCNEEGEIVDTMQGKRIRF 705
[Close]
BLAST of mRNA_D-dichotoma_M_contig1007.145.1 vs. uniprot
Match: D8LED1_ECTSI (PR1-like metalloprotease n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED1_ECTSI)

HSP 1 Score: 283 bits (725), Expect = 2.970e-82
Identity = 152/319 (47.65%), Postives = 197/319 (61.76%), Query Frame = 3 
Query:    3 ACNPNPCENGGTCALDPAGGHICTCASGFGGMSCQTDTTISGLAPFYIEQEFVGTWTPQRQAVFESAAARWEQVVTHHPGCGSSA-GHPAGRLLISSSLIEIDGPGNVLGQAGPTMLRLGCSSISIEGVMEFDVDDIASLEAQGIFEGVILHEMGHVLGIGTLWNSAFGSCTNCPP--SSAWGCDATVAVYNDLLQNPGGSEDAIVELDGGPGTACGHFDEDIFVDELMTGLVDLD-MSLSKLTAASLEDIDYVVDPSTVDPYTLPAFRLTAGISRNVSRFDSSETHVPISDIATETEIVVIDENDEVVEVIPSQLVRF 947
            ACNPNPC NGG+C +DP GG+ C+C S +GGM C+TD T  G++ F+I  +F+GTW+ +R+ VF+ AA RW +++TH P  G++  G  AG L I+S+L  IDG    LG AGP      C  IS  G M FD+DDIA +E QG FEGVILHEMGHV+G GTLW    G C++C    S+ W C     VYND + NP GS   IVEL+GG GT+CGHF E  F DELMTG V+   M LSKLT ASL D  YVV  S  D YT+P+ R  +        +  +E+         +T I V +E  E+V+ +  + +RF
Sbjct:  413 ACNPNPCMNGGSCEVDPNGGYTCSCGSSYGGMMCETDVT--GMSEFFITVDFLGTWSDERKGVFQRAANRWSEILTHIPCSGTNGNGGAAGELTITSTLEPIDGVYGTLGFAGPRGTYNDCRGISYSGEMTFDIDDIAEMERQGTFEGVILHEMGHVIGTGTLW----GECSDCDSTGSAEWKCPLAAQVYNDFMGNPAGSRADIVELEGGTGTSCGHFSESTFEDELMTGFVNAGTMPLSKLTCASLADQGYVVQSSKADSYTVPSRRDPSARQGETKTYKLAES-------TDDTTIDVCNEEGEIVDTMQGKRIRF 718
[Close]
BLAST of mRNA_D-dichotoma_M_contig1007.145.1 vs. uniprot
Match: D7G7J6_ECTSI (Putative zinc metalloendopeptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J6_ECTSI)

HSP 1 Score: 221 bits (562), Expect = 7.040e-59
Identity = 110/213 (51.64%), Postives = 140/213 (65.73%), Query Frame = 3 
Query:    3 ACNPNPCENGGTCALDPAGGHICTCASGFGGMSCQTDTTISGLAPFYIEQEFVGTWTPQRQAVFESAAARWEQVVTHHPGCGSSA-GHPAGRLLISSSLIEIDGPGNVLGQAGPTMLRLGCSSISIEGVMEFDVDDIASLEAQGIFEGVILHEMGHVLGIGTLWNSAFGSCTNCPP--SSAWGCDATVAVYNDLLQNPGGSEDAIVELDGGPG 632
            ACNPNPC NGG+C +DP GG+ C+C S +GGM C+TD T  G++ F+I  +F+GTW+ +R+ VF+ AA RW +++TH P  G++  G  AG L I+S+L  IDG    LG AGP      C  IS  G M FD+DDIA +E QG FEGVILHEMGHV+G GTLW    G C++C    S+ W C     VYND + NP GS   IVEL+GG G
Sbjct:  504 ACNPNPCMNGGSCEVDPNGGYTCSCGSSYGGMMCETDVT--GMSEFFITVDFLGTWSDERKGVFQRAANRWSEILTHIPCSGTNGNGGAAGELTITSTLEPIDGVYGTLGFAGPRGTYNDCRGISYSGEMTFDIDDIAEMERQGTFEGVILHEMGHVIGTGTLW----GECSDCDSTGSAEWKCPLAAQVYNDFMGNPAGSRADIVELEGGTG 710
[Close]
BLAST of mRNA_D-dichotoma_M_contig1007.145.1 vs. uniprot
Match: A0A399EQ36_9DEIN (Leishmanolysin n=1 Tax=Calidithermus roseus TaxID=1644118 RepID=A0A399EQ36_9DEIN)

HSP 1 Score: 162 bits (411), Expect = 7.870e-42
Identity = 101/234 (43.16%), Postives = 138/234 (58.97%), Query Frame = 3 
Query:  135 PFYIEQEFVGTWTPQRQAVFESAAARWEQVVT--------HHPGCGSSAGHPA-----GRLLISSSLIEIDGPGNVLGQAGPTMLRLGCSSISIEGVMEFDVDDIASLEAQGIFEGVILHEMGHVLGIGTLWN--SAFGSCTNCPPSSAWGCDATVAVYNDLLQNPGGSEDAIVELDGGPGTACGHFDEDIFVDELMTGLVDLDMS-LSKLTAASLEDIDYVVDPSTVDPYTLP 788
            P+ I   F GT TP +Q  F +AAARW+QV+T        + P    ++G PA       +LI ++++ IDGPG +LG AGP + R   + +++ G+MEFD  D+ASLEA G  + VI HEMGHVLGIGTLWN   +  S    P  +  G +A V  +  L    GGS +  VE  GG GT   H+ E +F +E+MTG +D   + LSK+T  S+ED+ Y V+ S  DPYTLP
Sbjct:   29 PYDITLRFTGTPTPSQQVAFNAAAARWQQVITQGFASINLNFPANACASGFPAFSGSVDDILIDAAVVSIDGPGGILGYAGPCLTR-NSNDLTVYGIMEFDSADLASLEASGQLDEVIFHEMGHVLGIGTLWNYNRSLLSGAGTPNPTFLGTNA-VREWQAL----GGSGNVPVENTGGSGTRDSHWRESVFNNEIMTGFLDSGANPLSKVTIGSMEDLGYSVNYSAADPYTLP 256
[Close]
BLAST of mRNA_D-dichotoma_M_contig1007.145.1 vs. uniprot
Match: A0A511NAJ7_9DEIO (Peptidase n=1 Tax=Deinococcus cellulosilyticus NBRC 106333 = KACC 11606 TaxID=1223518 RepID=A0A511NAJ7_9DEIO)

HSP 1 Score: 159 bits (401), Expect = 4.570e-40
Identity = 101/241 (41.91%), Postives = 140/241 (58.09%), Query Frame = 3 
Query:   93 GMSCQTDTTISGLAPFYIEQEFVGTW--TPQRQAVFESAAARWEQVVTHHPGCGSSAGHPAGRLLISSSLIEIDGPGNVLGQAGPTMLRLGCSSISIEGVMEFDVDDIASLEAQGIFEGVILHEMGHVLGIGTLWNSAFGSCT----NCPPSSA--WGCDATVAVYNDLLQNPGGSEDAIVELDGGPGTACGHFDEDIFVDELMTGLVDL-DMSLSKLTAASLEDIDYVVDPSTVDPYTLP 788
            G S  T  +     PF I+ +F      T  ++A+FE AA+RWEQV+TH     +  G     L+I +S + IDG G +LGQAGP  +R   +S+ + G+M+FD  D++++E  GI   VILHEMGHVLGIGTLW+   G  T    +C  S++  +     +A YN L    GG+    VE  GG GT CGH+ E IF  ELMTG  +   M +S++T ASL+D+ Y V+ +  D YTLP
Sbjct:   50 GFSLVTAISEEPSDPFDIDLDFSADTLLTTSQKAIFEQAASRWEQVITHGLSNINDGGTIYDDLVIKASAVAIDGVGGILGQAGPEFIR-NSNSLPLSGIMQFDSADLSNMETSGILYNVILHEMGHVLGIGTLWDY-LGFLTYNAADCQTSTSIVFNKANAIAQYNAL----GGAGSVPVEDTGGAGTKCGHWRESIFDTELMTGWAEAGSMPMSRMTIASLKDLGYSVNLAAADTYTLP 284
[Close]
BLAST of mRNA_D-dichotoma_M_contig1007.145.1 vs. uniprot
Match: UPI001E39278E (peptidase n=1 Tax=Pseudonocardia sp. TRM90224 TaxID=2812678 RepID=UPI001E39278E)

HSP 1 Score: 154 bits (390), Expect = 6.460e-39
Identity = 102/234 (43.59%), Postives = 134/234 (57.26%), Query Frame = 3 
Query:  132 APFYIEQEFVGTWTPQRQAVFESAAARWEQVVTHHPGCGSSAGHPAGRLLISSSLIEIDGPGNVLGQAGPTMLRLGCSS----ISIEGVMEFDVDDIASLEAQGIFEGVILHEMGHVLGIGTLWNSA---FGSCTNCPPSSAWGCDATVAVYNDLLQNPGGSEDAIVELDGGPGTACGHFDEDIFVDELMTGLVDLDMS-LSKLTAASLEDIDYVVDPSTVDPYTLPAFRLTAG 809
            +PF IE  F+G  T +++A F +AA RW  V+          G     +LI +    IDGPG VLGQAGPT LR   +     + ++GVM FD  D+A++E+ G  + VI HEMGHVLGIGTLW+      GS TN P  +  G    VA Y  L    G S    VE +GGPGT  GH+ E +F  ELM+G +    + LSKLTAASL D+ Y +D    +PYT+P  R++AG
Sbjct:   29 SPFSIEVRFLGGLTDRQRAAFAAAADRWTTVIVGDLPTAVVDGEEIDDVLILAEGSAIDGPGRVLGQAGPTDLRPASAGAAALLPVKGVMSFDTADLANMESDGTLDDVIAHEMGHVLGIGTLWSRKRLLAGSGTNNPTFTGSGA---VAQYAAL----GRSGAVPVENEGGPGTREGHWRESVFGHELMSGFISRPGNPLSKLTAASLGDLGYQIDIEAAEPYTIPE-RVSAG 254
[Close]
BLAST of mRNA_D-dichotoma_M_contig1007.145.1 vs. uniprot
Match: D8LJN8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJN8_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 1.270e-38
Identity = 80/163 (49.08%), Postives = 106/163 (65.03%), Query Frame = 3 
Query:    6 CNPNPCENGGTCALDPAGGHICTCASGFGGMSCQTDTTISGLAPFYIEQEFVGTWT----PQRQAVFESAAARWEQVVTHHPGCGSSAGHPAGRLLISSSLIEIDGPGNVLGQAGPTMLRLGCSSISIEGVMEFDVDDIASLEAQGIFEGVILHEMGHVLGIG 482
            CNPNPC N G+C +DP GG+ C+C+S +GGM+C+TDTT  GL  F+I  EF GTW       R+ +F++AA RWE+VVTH P  G+      G L+IS +  EIDG G      GP+ +   C  +S  GVM FD DDI  LE  GI EG+++HE+GHV+G+G
Sbjct:  383 CNPNPCLNEGSCEVDPNGGYSCSCSSSYGGMNCETDTT--GLPEFFITLEFDGTWDGALDATRKDIFQTAAKRWEKVVTHIPCTGTHPEGATGELIISVTQHEIDGSGGQFALGGPSDVYGDCPGVSYMGVMIFDSDDIDDLEDDGILEGLVVHEIGHVIGVG 543
[Close]
BLAST of mRNA_D-dichotoma_M_contig1007.145.1 vs. uniprot
Match: A0A1I4FEG5_9HYPH (Pre-peptidase C-terminal domain-containing protein n=2 Tax=Mesorhizobium albiziae TaxID=335020 RepID=A0A1I4FEG5_9HYPH)

HSP 1 Score: 161 bits (407), Expect = 1.880e-38
Identity = 103/239 (43.10%), Postives = 137/239 (57.32%), Query Frame = 3 
Query:   81 SGFGGMSCQTDTTISGLAPFYIEQEFVGTWTPQR--QAVFESAAARWEQVVTHH-PGCGSSAGHPAGRLLISSSLIEIDGPGNVLGQAGPTMLRLGCSSISIEGVMEFDVDDIASLEAQGIFEGVILHEMGHVLGIGTLWNSAFGSCTNCPPSSAWGCDATVAVYNDLLQNPGGSEDAIVELDGGPGTACGHFDEDIFVDELMTGLVDLDMSLSKLTAASLEDIDYVVDPSTVDPYTLP 788
            SG  G    T    + ++P   E + V  ++     QA F+ AAARWEQV+    P   +S+      LLI +S+I IDGP NVLG+AGP  LR G SS+   G+MEFD  D+A++ A G    VILHEMGHVLG+GTLW+       N         ++ +A Y   L     ++   +E  GG GTA GH+ E +F  ELMTG  +  M++S++T ASLED+ Y VD ST DPYTLP
Sbjct:  376 SGGAGTGSYTVAATNNVSPPDGEFDIVVNYSGDARFQAAFDEAAARWEQVIVADLPDVNTSSWGLVDDLLIDASVIAIDGPSNVLGRAGPDALRSG-SSLPYHGIMEFDSADMATMLANGTLVDVILHEMGHVLGLGTLWSQLGLKSGNFQYIG----ESALAEYR-TLSGQANAQSVPLETGGGAGTAGGHWAESVFGGELMTGYANGSMAMSRMTIASLEDMGYGVDYSTADPYTLP 608
[Close]
BLAST of mRNA_D-dichotoma_M_contig1007.145.1 vs. uniprot
Match: A0A5B7SQS5_9FLAO (Uncharacterized protein n=1 Tax=Aggregatimonas sangjinii TaxID=2583587 RepID=A0A5B7SQS5_9FLAO)

HSP 1 Score: 159 bits (401), Expect = 4.890e-38
Identity = 113/276 (40.94%), Postives = 149/276 (53.99%), Query Frame = 3 
Query:   96 MSCQTDTTISGLAPFYIEQEFVGTWTPQRQAVFESAAARWEQVVTHH-PGCGSSAGHPAGRLLISSSLIEIDGPGNVLGQAGPTMLRLGCSSISIEGVMEFDVDDIASLEAQGIFEGVILHEMGHVLGIGTLWNSAFGSC--TNCPPSSAWGCDATVAVYNDLLQNPGGSEDAIVEL--DGGPGTACGHFDEDIFVDELMTGLVDL-DMSLSKLTAASLEDIDYVVDPSTVDPYTLPAFRLTAGISRNVSRFDSSETH-----VPISDIATETEIV 890
            ++ +++ T    +PF IE  F+G  T  +QA F+ AA RW +++  + P   +  G     L+I +  I IDG G +LGQAGPT LR G S +   G+M+FD  D+  +E  G   GVI+HEMGHVLGIGTLW S FG    T        G +A +A Y  L   P G     V L   GG GT  GH+ E +F  ELMTG VD+  M LS+LT ASL+DI Y VD +  DPY LP   LT G      R ++   H     VP  ++  E  +V
Sbjct:  289 LAIKSNDTPQPTSPFKIEVNFLGGLTNSQQAAFQIAADRWSEIIVGNLPSVNTDIG-VVDDLVIDAEGIVIDGSGGILGQAGPTQLRPG-SMLPARGIMQFDSADLQQMEDDGSLTGVIVHEMGHVLGIGTLW-STFGLIEGTGSDNPEFKGSNA-IAEYATLKNAPSG----FVPLANTGGQGTREGHWRESVFDTELMTGYVDVGQMPLSRLTVASLQDIGYQVDYNKADPYILPFALLTRG------RIEAKSVHRCQVGVPAFEVLPEDSVV 550
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1007.145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LED2_ECTSI1.210e-8346.71Ig-like protein, group 2 n=1 Tax=Ectocarpus silicu... [more]
D8LED3_ECTSI3.040e-8347.96WSC domain protein n=3 Tax=Ectocarpus TaxID=2879 R... [more]
D8LED1_ECTSI2.970e-8247.65PR1-like metalloprotease n=2 Tax=Ectocarpus silicu... [more]
D7G7J6_ECTSI7.040e-5951.64Putative zinc metalloendopeptidase n=1 Tax=Ectocar... [more]
A0A399EQ36_9DEIN7.870e-4243.16Leishmanolysin n=1 Tax=Calidithermus roseus TaxID=... [more]
A0A511NAJ7_9DEIO4.570e-4041.91Peptidase n=1 Tax=Deinococcus cellulosilyticus NBR... [more]
UPI001E39278E6.460e-3943.59peptidase n=1 Tax=Pseudonocardia sp. TRM90224 TaxI... [more]
D8LJN8_ECTSI1.270e-3849.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1I4FEG5_9HYPH1.880e-3843.10Pre-peptidase C-terminal domain-containing protein... [more]
A0A5B7SQS5_9FLAO4.890e-3840.94Uncharacterized protein n=1 Tax=Aggregatimonas san... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1007contigD-dichotoma_M_contig1007:177497..183277 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score237.3
Seed ortholog evalue9e-60
Seed eggNOG ortholog2880.D8LED4
EggNOG free text desc.Metallo-peptidase family M12B Reprolysin-like
EggNOG OGs2E9TD@1,2SG44@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons7
Model size1964
Cds size858
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927485.1112373-UTR-D-dichotoma_M_contig1007:177496..1775911622927485.1112373-UTR-D-dichotoma_M_contig1007:177496..177591Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1007 177497..177591 +
1690797995.074001-UTR-D-dichotoma_M_contig1007:177496..1775911690797995.074001-UTR-D-dichotoma_M_contig1007:177496..177591Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1007 177497..177591 +
1622927485.2061245-UTR-D-dichotoma_M_contig1007:182266..1832771622927485.2061245-UTR-D-dichotoma_M_contig1007:182266..183277Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1007 182267..183277 +
1690797995.1399732-UTR-D-dichotoma_M_contig1007:182266..1832771690797995.1399732-UTR-D-dichotoma_M_contig1007:182266..183277Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1007 182267..183277 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927485.1226785-CDS-D-dichotoma_M_contig1007:177591..1776191622927485.1226785-CDS-D-dichotoma_M_contig1007:177591..177619Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1007 177592..177619 +
1690797995.0831234-CDS-D-dichotoma_M_contig1007:177591..1776191690797995.0831234-CDS-D-dichotoma_M_contig1007:177591..177619Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1007 177592..177619 +
1622927485.1333356-CDS-D-dichotoma_M_contig1007:178566..1786541622927485.1333356-CDS-D-dichotoma_M_contig1007:178566..178654Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1007 178567..178654 +
1690797995.0905616-CDS-D-dichotoma_M_contig1007:178566..1786541690797995.0905616-CDS-D-dichotoma_M_contig1007:178566..178654Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1007 178567..178654 +
1622927485.1440818-CDS-D-dichotoma_M_contig1007:179138..1794081622927485.1440818-CDS-D-dichotoma_M_contig1007:179138..179408Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1007 179139..179408 +
1690797995.0980046-CDS-D-dichotoma_M_contig1007:179138..1794081690797995.0980046-CDS-D-dichotoma_M_contig1007:179138..179408Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1007 179139..179408 +
1622927485.153642-CDS-D-dichotoma_M_contig1007:179999..1801481622927485.153642-CDS-D-dichotoma_M_contig1007:179999..180148Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1007 180000..180148 +
1690797995.1054585-CDS-D-dichotoma_M_contig1007:179999..1801481690797995.1054585-CDS-D-dichotoma_M_contig1007:179999..180148Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1007 180000..180148 +
1622927485.165136-CDS-D-dichotoma_M_contig1007:180449..1805171622927485.165136-CDS-D-dichotoma_M_contig1007:180449..180517Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1007 180450..180517 +
1690797995.1126492-CDS-D-dichotoma_M_contig1007:180449..1805171690797995.1126492-CDS-D-dichotoma_M_contig1007:180449..180517Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1007 180450..180517 +
1622927485.18352-CDS-D-dichotoma_M_contig1007:180989..1810581622927485.18352-CDS-D-dichotoma_M_contig1007:180989..181058Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1007 180990..181058 +
1690797995.1226478-CDS-D-dichotoma_M_contig1007:180989..1810581690797995.1226478-CDS-D-dichotoma_M_contig1007:180989..181058Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1007 180990..181058 +
1622927485.1951888-CDS-D-dichotoma_M_contig1007:182080..1822661622927485.1951888-CDS-D-dichotoma_M_contig1007:182080..182266Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1007 182081..182266 +
1690797995.1300137-CDS-D-dichotoma_M_contig1007:182080..1822661690797995.1300137-CDS-D-dichotoma_M_contig1007:182080..182266Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1007 182081..182266 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1007.145.1prot_D-dichotoma_M_contig1007.145.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1007 177592..182266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1007.145.1

>prot_D-dichotoma_M_contig1007.145.1 ID=prot_D-dichotoma_M_contig1007.145.1|Name=mRNA_D-dichotoma_M_contig1007.145.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=286bp
MSCQTDTTISGLAPFYIEQEFVGTWTPQRQAVFESAAARWEQVVTHHPGC
GSSAGHPAGRLLISSSLIEIDGPGNVLGQAGPTMLRLGCSSISIEGVMEF
DVDDIASLEAQGIFEGVILHEMGHVLGIGTLWNSAFGSCTNCPPSSAWGC
DATVAVYNDLLQNPGGSEDAIVELDGGPGTACGHFDEDIFVDELMTGLVD
LDMSLSKLTAASLEDIDYVVDPSTVDPYTLPAFRLTAGISRNVSRFDSSE
THVPISDIATETEIVVIDENDEVVEVIPSQLVRFF*
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mRNA from alignment at D-dichotoma_M_contig1007:177497..183277+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1007.145.1 ID=mRNA_D-dichotoma_M_contig1007.145.1|Name=mRNA_D-dichotoma_M_contig1007.145.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=5781bp|location=Sequence derived from alignment at D-dichotoma_M_contig1007:177497..183277+ (Dictyota dichotoma ODC1387m male)
GTGCCTGCAACCCGAACCCTTGCGAAAATGGCGGAACCTGCGCGTTAGAC
CCCGCGGGCGGTCACATCTGCACGTGCGCTTCTGGCTTCGGCGGCATGTC
CTGCCAGACAGATACCACAATAAGTGAGTGGAACGCAATGCATGGGAAAC
AGATACTGTAGGATGGGAGAGGACGAGCGTGCGAACTCAGTCCAACCTCC
AGTCTTCACAGCGGGGATAGAGGGCTGTCTTGAGCTGTCGACGCCCGTCG
TCTAGTTATTCTCGACAACTGGGACTTGAGCCTCACCTTGCCTTTGTCTC
CGCGCCGCGGTCTCGATGGTACCATCATCATACCATCCCCATGCCATCAT
CATACCATCATCATACTATCATCACTCTGAGGTACCATCATCATACTATC
ATCACTCTGAGGTACCATCATGATACTATCATCACTCTGAGGTACCATCA
TGATACTATCATCACTCTGAGGTACCATCATGATACTATCATCACTCTGA
GGTACCATCATCATACTATCATCACTCTGAGGTACCATCATCATACTATC
ATCACTCTACCATCATCTATCATCACTCTGAGGTACCATCATCATACTAT
CATATACCATCATGATACTATCATCACTCTGAGGTACCATCATCATACTA
TCATCACTCTGAGGTACCATCATCATACTATCATCACTCTGAGGTACCAT
CATCATACTATCATCACTCTGAGGTACCATCACTACACTGAAGAATCGTA
CAAAAATGAGGGGGTGACCCTTCCATGTCTTCAAGATGAAAACGGTGGTT
CCTGTTTGGTACAATTAATATCCTGCTGCAATGGCGATGGCGATGGCGAT
AGCAATGTCGATGATCATGGCCACCTCGAATCGTACTGAATGAATGGACA
CACCACCTGCCACTTACCACTTGCCGTGAGGAGGGTATCATGGGCATTTC
TCGGGCTGTCGAAATTATGCTTGTGCTTTTGTCTCTCCAGTGGAGGGAGC
CCGAGAGGCGAGGTTAACATTTTGCTAAGGGGCGTGTTCATTCGCGTTTT
CGGTCTTGGTTTTTTATCAGGTGGTTTGGCTCCGTTCTACATCGAGCAGG
AGTTCGTGGGGACTTGGACCCCGCAGCGTCAAGCGGTGTTCGAAAGTGCC
GCAGCAAGGTGGGCTCAAGCCTAGAGAACGCGTCGTTGTGATTTTCTCAC
CAATGCTTGACATGCTTGACATGCTTGACGTGGAAACGTCTAGTACTTGA
GTGGCTTTGCGAGGAAGTAAGAGAGGCTCAGGATGCTTTGTGCTCCGGTA
ATCGCTCCCCAGCCTTCACATCCTTGATCATCTTGCTGATAGTAGTGCGA
CATTCCATTGGTCCGTCGAGTTGACTAGCTGGACCAGTTGGTCTATCGCT
CAGGACAATgaGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAG
AAGCACTACAGGTTCCGATAGCTTTCGTTGCGTGAGCTTGACGTCTTTCC
CTTTGTCGAGTTTCATGCGAAAATGTCAAATCTAAAGCTTCATGCATCCA
ATGTCACGTTTCACATACCAAATGTCAAATGCTATGCGTGACGCGTGTCA
AATGTCAAATGCCATGCGTACGTGTCACGTATGAAATATCAGATGGGAGC
AGGTTGTCACCCATCATCCTGGTTGCGGGTCTTCCGCAGGGCACCCGGCT
GGAAGGCTCCTCATCTCGTCGTCACTGATAGAGATCGACGGACCGGGCAA
TGTCTTGGGACAAGCTGGGCCTACCATGCTTCGACTTGGTTGTTCGTCTA
TCAGTATTGAAGGGGTCATGGAGTTCGACGTGGATGATATCGCATCATTG
GAAGCACAAGGGATCTTCGAGGGGGTGATCCTTCACGAAATGGGTCATGT
TCTCGGTATCGGGTGAGTATGATGTGCGATGTATTCTTCTGTTTCTTGGT
TGCGAGGTAAGGTAGGATAGGGCAACTTAAGGCAGCATAGGAAACGAAAG
CACGGGACATGGGAAAGGAAAGCACGGGACATAGGAAAGGAAAGCACGGG
ACAGGATAGGATAGGATAGCACAGGATAGGATAGCATGTGATAAGATAAG
AACCGTTACGGTTACGATGTGATAGGATAGGTCATCACTGGGTAGTATGT
CATAGGGAAGAACGCGAGAGGGAAAGGTCAAAAATTAATTCAGCGGATGA
GTGTGATCGCAGTGACTCGCTAGCAAGCGATTGGGTCCCCATCTCCGTCC
CGTGGACTCCACCAATCAGCGGAACCTTTTATGCGCGCAGTTCTGCCTAC
CGTTTAGCATCCACATCTCATGTCATCACCCATAACACCGTATCGACAAT
TGGAGGGAGTGAGGTGAGGTAAGGTGAGGTGAGGTTGCTCGCATCATTCC
ATGAGAACAGCGCTGCGGGAAATATTGAATGGAGTTAAATGTACAAATCT
TACATACGCCCCTATCCTTGTCCTCTTCTGCATCTTTTCCCGTATTTGAT
AAGGACTCTTTGGAATTCTGCATTCGGAAGCTGTACCAATTGCCCCCCTT
CAAGTGCCTGGGGATGCGACGCTACTGTCGCCGTATACAACGATCTCCTC
CAAAACCCAGGGGGTTCCGAGGATGCAATCGTCGAGTTGGATGGAGGCCC
GGGTGAGAAAGTACACGAGGACATCACGTTGACTACTAGTGAGAGTTGGG
AATTGGGCACAGACACACCCACGAACCCACGGACCCACGGACAGACAGAA
GCTTCCCCACTTTACACCGTTAGCACCAACCGAGAGCCGCCGCCGCCGCC
GCTGCCGCCGCCAATGATGATGATGATGATGATGTGATAATCATGAGTTC
ATCATGAGGTGATCAGAATGGAATGAGGATAATTATATATTTTTGCGTGT
TATACTATCATCTTGTTAAATATCACCTCCTCTCGTTTCACGTCGTCTCG
CAGGGACCGCTTGCGGACATTTTGATGAAGATATTTTCGTGGATGAGCTC
ATGACGGGCCTCGTTGATCTTGTAAGTTATTCCTACTGGAGGATAATCAG
ATTCGATCTTGGTTCTTGAAACATCCCGCTACCGTTCGAACCATCAAAGC
CCTTGATAAGAGTAAAAGACTAGACTAGATTAGACGAGGCAGTTTCTGCC
TATATTCTTGTTGGAAGACGTGCTTTGAGAGGCCCAACGCGAAGGTGTGT
AATTTAAGCTTCAGGATACCTACGTCGCTTCCGCTGTCGCAAAATGTGCC
TCCACTACGAAGCATCGCCTCCTCCCCTGCAGCGTGGCAAAGCGTATCCG
AGGTTGTTGAATACCCCGCATCTTCCTTTTCGGGAGCTTTTGAAGAGTTG
GCTTAGGGAGTTGTCGAGTACAGTCAGCCTCCAGCGTAGACGTGACGTCT
ACATTACTCTACATCCTTGACTTCTCCCGACGGTGCTAGAAGTGATGGTG
GCAATGGTGACCGTACCCACGTTCAATCCTTCGTGGTTCGCAGGATATGA
GCCTTTCCAAGTTAACGGCTGCGTCGCTTGAAGATATCGACTACGTGGTG
GACCCGAGTACGGTGAGTTCTTTCTGTTTTTGCGTGCCTTGCATCTCGTC
CATGTCGTCTACAGAACGTACGATGTACTATTTGTAATCGAGAGAGAGGT
AAACGGTAAAATCTGGGCAAGCTGTCACTTTATCACAAAACAAGTTCGGA
ATTGAGGGGAACAGTGGAACTCTATCGAATCGAGACTGGCCAACTTCTTC
TCACAGCTTGGGACCATCGGCGCGATACGAAGAACTTGGAGCAACAGGGA
AACGATACAGTCCGACGAATATCATGACGTCTACATGTCGATGATCAGAC
CTGAAGTTGATTAGAGGAATAGTTTGGAGCAGTAACCTCACCTACAGCTT
GATCATTTCATGCTGGACCAAAATTGAAGAAATATTCTTCGATAGATGAA
GTTCAATTTCAAGTTCAATTTCAAGTTCAAGTTCAATTTCAATTTCAAGT
TCAACTCATACCCAGATTGCACGGAATCCAAGGTATATCGTGGCGCGATC
AGCTTCCCAATTTTATTTTTGGATCAGATCGCACCAGCCCTAGCCCTAGC
CCTAGCCCTAGCGCAAAAGGTAACGGTAACGATGACGCTTTCCCTCACCC
AGTCATCATCGCTATACCGTCACAACGTTGCGAAGATGCGTTATTAGCCT
TCATCCCAATCGTTGTTCTATTCCTTTTACCTTGTTAGTGGCGAGCTTCA
AGATGTCGACCTCACGTGACCTTTAACGACCCCATATGACCCCGTACGAC
ATCATACGATCTGAGGGTCGCATGCCAATCTGCCAAGCCATTGAATCGAA
GACGAGATGTGTCTTCCAGCAGGAGTTCCTCGAGGGGAACAAGAAGCCGG
GAATGAATAAAACGGAGATCTCACGCGCTTTGCACATCATGCTGTATGTA
TCACACACATCACACACGTCACATATGCCACACACCATGCGTACCACAGT
ATTATGTCTGTGGTATTTTCCGCACTTGCTGCCTACGTTACTCATTTCGC
TTTTATCGCACGCTTCTTCTTGTCATCGGCGCAGGTCGACCCGTATACTC
TCCCGGCCTTCCGTCTCACCGCCGGGATCAGCAGGAATGTCAGCCGTTTC
GACAGCAGTGAAACGCACGTTCCAATCAGCGACATCGCCACGGAGACGGA
GATAGTGGTGATAGATGAGAATGACGAGGTTGTCGAGGTCATCCCTAGCC
AGTTGGTGCGGTTCTTCTGAAACACGTTGACCTTTGATGCCCTTCATATG
CCTCATGTGCCGCATGCACTTCCCACATAGTGATGAAGAAGATGTTGGTG
CTAGACGTTAAGAAGGCTCTTGTTGTGGTTCTTGTTGTGCGGGCCATCTT
CCCGTAGCTTGTGGTCGTGCCATGAGATCCATTGGTCAGGAGGGGAAGAG
GGGGAGAGGACTCTGTCGCTGACCGAGCAGACGAGGTTTCACAGTTTTCG
TTGTTAAAAGGTTGTGACACACTTCGTATCGGCGAGGGGGCGCTTTGGGG
CAAGAGGTGAGAGGGGAGACGGGAGAGGACTATTGGAGGTGACCGATCGA
CCGACAGACAGATAGACAGACAGACCGACAGACTTAACGGGCTTAAGGGG
TTACGAAGCGTTTTGTTTGTCAGGGAGTTTTGTCCCTGCTGCCTTTGTCC
CTGTACGGATGCTACCTAACCCGACGATGATGCGCGGTAGAAAATGCGCG
TCACGTGCGTCATGTGCATCATGTCCTTGACGTGGACCACGTGCACCACG
TGTACCATGCATATCAGTTTATGTGTATTCAGTGATTAAAGTAGGATAGG
ATCATTAGATCTATAGATCGTTGGACACGCACCTAGCGCTCAGTCCAGGT
GTACAGGTGTCCGTGTAGGAGTTTTATCTTAAGTGATTGGAAAGTGATAA
AGGAATCGTGGGTTTGCATCGGATGCGCAGGTGGAGCCAGTGGTTTACGC
TTCCCTTTGTTGCATTTGCCGTACATACGAAGACACGCAGGCAGATAGAT
ATCGTGTATGAAGTCGTTCAGTGGTAGCCATAGACGGCGTACAATCGATC
GATCTCTTGATGTCACTAATCTAGAGTACAGAATAATGTCTAGCTTTCAA
AACCCTGTTGACGAGTACCGAATCTTTCATTAAGGCGTCATACAGTAACA
TAAGTGCAAGCGGCTTGGCATACATGAACGGGAGGAACAGACATGGAAAT
ACGGAAGAAAACAGGCAGCCCTATCACGTCA
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1007:177497..183277+

>mRNA_D-dichotoma_M_contig1007.145.1 ID=mRNA_D-dichotoma_M_contig1007.145.1|Name=mRNA_D-dichotoma_M_contig1007.145.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1716bp|location=Sequence derived from alignment at D-dichotoma_M_contig1007:177497..183277+ (Dictyota dichotoma ODC1387m male)
ATGTCCTGCCAGACAGATACCACAATAAATGTCCTGCCAGACAGATACCA
CAATAAGTGGTTTGGCTCCGTTCTACATCGAGCAGGAGTTCGTGGGGACT
TGGACCCCGCAGCGTCAAGCGGTGTTCGAAAGTGCCGCAGCAAGGTGGTT
TGGCTCCGTTCTACATCGAGCAGGAGTTCGTGGGGACTTGGACCCCGCAG
CGTCAAGCGGTGTTCGAAAGTGCCGCAGCAAGATGGGAGCAGGTTGTCAC
CCATCATCCTGGTTGCGGGTCTTCCGCAGGGCACCCGGCTGGAAGGCTCC
TCATCTCGTCGTCACTGATAGAGATCGACGGACCGGGCAATGTCTTGGGA
CAAGCTGGGCCTACCATGCTTCGACTTGGTTGTTCGTCTATCAGTATTGA
AGGGGTCATGGAGTTCGACGTGGATGATATCGCATCATTGGAAGCACAAG
GGATCTTCGAGGGGGTGATCCTTCACGAAATGGGTCATGTTCTCGGTATC
GGATGGGAGCAGGTTGTCACCCATCATCCTGGTTGCGGGTCTTCCGCAGG
GCACCCGGCTGGAAGGCTCCTCATCTCGTCGTCACTGATAGAGATCGACG
GACCGGGCAATGTCTTGGGACAAGCTGGGCCTACCATGCTTCGACTTGGT
TGTTCGTCTATCAGTATTGAAGGGGTCATGGAGTTCGACGTGGATGATAT
CGCATCATTGGAAGCACAAGGGATCTTCGAGGGGGTGATCCTTCACGAAA
TGGGTCATGTTCTCGGTATCGGGACTCTTTGGAATTCTGCATTCGGAAGC
TGTACCAATTGCCCCCCTTCAAGTGCCTGGGGATGCGACGCTACTGTCGC
CGTATACAACGATCTCCTCCAAAACCCAGGGGGTTCCGAGGATGCAATCG
TCGAGTTGGATGGAGGCCCGGGACTCTTTGGAATTCTGCATTCGGAAGCT
GTACCAATTGCCCCCCTTCAAGTGCCTGGGGATGCGACGCTACTGTCGCC
GTATACAACGATCTCCTCCAAAACCCAGGGGGTTCCGAGGATGCAATCGT
CGAGTTGGATGGAGGCCCGGGGACCGCTTGCGGACATTTTGATGAAGATA
TTTTCGTGGATGAGCTCATGACGGGCCTCGTTGATCTTGGACCGCTTGCG
GACATTTTGATGAAGATATTTTCGTGGATGAGCTCATGACGGGCCTCGTT
GATCTTGATATGAGCCTTTCCAAGTTAACGGCTGCGTCGCTTGAAGATAT
CGACTACGTGGTGGACCCGAGTACGGATATGAGCCTTTCCAAGTTAACGG
CTGCGTCGCTTGAAGATATCGACTACGTGGTGGACCCGAGTACGGTCGAC
CCGTATACTCTCCCGGCCTTCCGTCTCACCGCCGGGATCAGCAGGAATGT
CAGCCGTTTCGACAGCAGTGAAACGCACGTTCCAATCAGCGACATCGCCA
CGGAGACGGAGATAGTGGTGATAGATGAGAATGACGAGGTTGTCGAGGTC
ATCCCTAGCCAGTTGGTGCGGTTCTTCTGAGTCGACCCGTATACTCTCCC
GGCCTTCCGTCTCACCGCCGGGATCAGCAGGAATGTCAGCCGTTTCGACA
GCAGTGAAACGCACGTTCCAATCAGCGACATCGCCACGGAGACGGAGATA
GTGGTGATAGATGAGAATGACGAGGTTGTCGAGGTCATCCCTAGCCAGTT
GGTGCGGTTCTTCTGA
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