mRNA_D-dichotoma_M_contig1004.131.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1004.131.1
Unique NamemRNA_D-dichotoma_M_contig1004.131.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
BLAST of mRNA_D-dichotoma_M_contig1004.131.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 8.780e-35
Identity = 64/76 (84.21%), Postives = 70/76 (92.11%), Query Frame = 1
Query:   34 FTRSKRVVVQQDGASPHTGKNNPEILHSAGMGRGWIVELVTQPAQSPDLNVNDLGFFASLKSRVWGMNASSIDELV 261
            + RSKRVVVQQDGASPHTGK NPEIL+SAG+ RGW+VELVTQPAQSPDLN+NDLG FASLK RVWG+NA SIDELV
Sbjct:  289 WLRSKRVVVQQDGASPHTGKGNPEILNSAGIARGWLVELVTQPAQSPDLNINDLGCFASLKPRVWGVNAFSIDELV 364          
BLAST of mRNA_D-dichotoma_M_contig1004.131.1 vs. uniprot
Match: A0A7S3GU94_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GU94_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.600e-25
Identity = 52/150 (34.67%), Postives = 85/150 (56.67%), Query Frame = 1
Query:   34 FTRSKRVVVQQDGASPHTGKNNPEILHSAGMGRGWIVELVTQPAQSPDLNVNDLGFFASLKSRVWGMN--ASSIDELVETIFDQYEKYDGDTLERVWHSLFKVYNQTLRQLGNNDFSVEHTGVTARQRAGTLERVVKYDKEAFTTAWDYL 477
            + R++R+ +Q DGA PHT     + +H+     GW + +V Q AQSPDLNV DLG F SLK +V  +   A +IDEL++ +   Y++Y  DTL+++W      + + +R +G+N +   H G T  ++       +  D +A+  A DY+
Sbjct:    9 WMRNRRLKIQHDGARPHTAGGLEDEVHATASTEGWHITMVRQRAQSPDLNVMDLGLFHSLKVQVIQLKDGAHNIDELIQKVRVVYQQYSRDTLDQIWGHQVACWTEIMRAMGSNQYKAPHHGGTVSRKEEGSAVNLSIDADAYNAAVDYV 158          
BLAST of mRNA_D-dichotoma_M_contig1004.131.1 vs. uniprot
Match: UPI00053F7236 (uncharacterized protein LOC104908485 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F7236)

HSP 1 Score: 98.6 bits (244), Expect = 6.820e-22
Identity = 49/135 (36.30%), Postives = 80/135 (59.26%), Query Frame = 1
Query:   43 SKRVVVQQDGASPHTGKNNPEILHSAGMGRGWIVELVTQPAQSPDLNVNDLGFFASLKSRVWGMNASSIDELVETIFDQYEKYDGDTLERVWHSLFKVYNQTLRQLGNNDFSVEHTGVTARQRAGTLERVVKYDK 447
            SK + +QQD A  H  + N E   +A    G+ ++L+ QPAQSPDLNV DLGFF ++++ ++     +IDEL+E + D Y+K+D + ++  W  L  V  + L+  G N++   H G    +R G L + V++D+
Sbjct:  123 SKEIFIQQDNARAHI-QGNDEAFKAAATQNGFNIKLIQQPAQSPDLNVLDLGFFRAIQALMYQTFPKNIDELIENVQDAYDKFDPNVVKYTWLKLHWVMVEILKVKGGNNYKNPHHGKARLERLGLLPKNVQFDQ 256          
BLAST of mRNA_D-dichotoma_M_contig1004.131.1 vs. uniprot
Match: UPI000B7825C5 (uncharacterized protein LOC110701536 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B7825C5)

HSP 1 Score: 97.1 bits (240), Expect = 1.540e-21
Identity = 50/145 (34.48%), Postives = 79/145 (54.48%), Query Frame = 1
Query:   43 SKRVVVQQDGASPHTGKNNPEILHSAGMGRGWIVELVTQPAQSPDLNVNDLGFFASLKSRVWGMNASSIDELVETIFDQYEKYDGDTLERVWHSLFKVYNQTLRQLGNNDFSVEHTGVTARQRAGTLERVVKYDKEAFTTAWDYL 477
            SK +++Q D A PH    + E L +A    G+ ++ V QPAQSPDLNV DLG F +++S  +    +++DEL+E + + +E +D       W +L     + L + G N+F+  H G     R G LE ++K DK+      +YL
Sbjct:   78 SKNIIIQWDNARPHQVPKDEEFL-AATQANGFNIQFVFQPAQSPDLNVLDLGLFKAIQSNQYQSFPTNLDELIEKVDEAFEMFDPTLNRYTWITLQSCMIKVLEKQGGNNFNPPHMGKARLDRQGALEDILKVDKKLVANTVEYL 221          
BLAST of mRNA_D-dichotoma_M_contig1004.131.1 vs. uniprot
Match: A0A0N7L738_PLAHL (Predicted methyltransferase n=4 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L738_PLAHL)

HSP 1 Score: 99.8 bits (247), Expect = 3.860e-21
Identity = 57/147 (38.78%), Postives = 81/147 (55.10%), Query Frame = 1
Query:   46 KRVVVQQDGASPHTGKNNPEILHSAGMGRGWIVELVTQPAQSPDLNVNDLGFFASLKSRVWGMNASSIDELVETIFDQYEKYDGDTLERVWHSLFKVYNQTLRQLGNNDFSVEHTGV-TARQRAGTLERVVKYDKEAFTTAWDYLAS 483
            KRVV+QQD A PH   ++PE+ HSA    GW ++L  QPA SPD N NDLGFFASL+S    M A +I++LV  + D + K     L++V+ +L  V  +T+   G N + + H    T R   G L   +      +  A  +L+S
Sbjct:  604 KRVVLQQDNAKPHVTVDDPEV-HSACSAGGWDMKLTAQPANSPDFNANDLGFFASLQSLQHKMKAKTIEDLVNNVDDAFAKLHYTALDKVFLTLQSVLQETMHIDGCNKYKIPHLAKDTLRTSTGLLPPSLTCSDRVYDKARRFLSS 749          
BLAST of mRNA_D-dichotoma_M_contig1004.131.1 vs. uniprot
Match: UPI000B771AE9 (uncharacterized protein LOC110737253 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B771AE9)

HSP 1 Score: 94.0 bits (232), Expect = 2.350e-20
Identity = 53/158 (33.54%), Postives = 83/158 (52.53%), Query Frame = 1
Query:   10 VVKASLSYFTRS--KRVVVQQDGASPHTGKNNPEILHSAGMGRGWIVELVTQPAQSPDLNVNDLGFFASLKSRVWGMNASSIDELVETIFDQYEKYDGDTLERVWHSLFKVYNQTLRQLGNNDFSVEHTGVTARQRAGTLERVVKYDKEAFTTAWDYL 477
            V+ A +S +  S  K V++Q D A PH    + E + +A    G+ +  V QPAQSPDLNV DLG F S++S  +     ++DELVE + + Y  +  +  + +W +L +   + L+  G N + + H      +  GTL  VV   +E  T A +YL
Sbjct:   65 VIPAIISKWPESQPKNVIIQWDNARPHQIPTDDEFI-AATTSNGFNIHFVFQPAQSPDLNVLDLGLFRSIQSLQYQSFPKNVDELVEKVIESYNTFKPEVNKYIWVTLQRCMIKILKAEGGNKYKIPHMNKKKLENLGTLPNVVHVQEEVVTEAVEYL 221          
BLAST of mRNA_D-dichotoma_M_contig1004.131.1 vs. uniprot
Match: A0A7S2FC44_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FC44_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 4.620e-20
Identity = 55/123 (44.72%), Postives = 73/123 (59.35%), Query Frame = 1
Query:   58 VQQDGASPHTGKNNPEILHSAGMGRGWIVELVTQPAQSPDLNVNDLGFFASLKSRVWGM-NASSIDELVETIFDQYEKYDGDTLERVWHSLFKVYNQTLRQLGNNDFSVE--HTGVTARQRAG 417
            +QQDGA PHT       L   G   G+ +++ TQPAQSPDLNVNDLGFF SLK     +  A S++E+++ I   YE+   D L+R++ SL   Y   L+  G+NDFS E  H G   +QR G
Sbjct:   34 IQQDGAKPHTAAET--WLKGQGKKEGFDLKVTTQPAQSPDLNVNDLGFFRSLKCAATNVAEAFSVEEMIKYIRQAYEEMPADKLDRMFMSLINNYRLLLKHDGDNDFSQEELHLG---KQRKG 151          
BLAST of mRNA_D-dichotoma_M_contig1004.131.1 vs. uniprot
Match: UPI000B778AD2 (uncharacterized protein LOC110722901 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B778AD2)

HSP 1 Score: 92.8 bits (229), Expect = 5.650e-20
Identity = 52/145 (35.86%), Postives = 78/145 (53.79%), Query Frame = 1
Query:   46 KRVVVQQDGASPHTGKNNPEILHSAGMGRGWIVELVTQPAQSPDLNVNDLGFFASLKSRVWGMNASSIDELVETIFDQYEKYDGDTLERVW-HSLFKVYNQTLRQLGNNDFSVEHTGVTARQRAGTLERVVKYDKEAFTTAWDYL 477
            K + +QQD A PH   ++PE L  A    G+ + L+ QPAQSPDLNV DLGFF ++++        S++ELVE++   Y  YD   +   W HS++ V  + ++  G N+F   H G    QR G L   V+   E    + ++L
Sbjct:   79 KTIWIQQDNARPHINIDDPEFLEEANKD-GFDMHLICQPAQSPDLNVLDLGFFRAIQAIQHQEFPESVEELVESVLTSYASYDPRIINMTWLHSMY-VMEEIMKVKGGNNFKNPHKGKKRLQRLGLLPSYVEVSNELVLDSINFL 221          
BLAST of mRNA_D-dichotoma_M_contig1004.131.1 vs. uniprot
Match: UPI000B8A6B46 (uncharacterized protein LOC110779611 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8A6B46)

HSP 1 Score: 95.5 bits (236), Expect = 1.050e-19
Identity = 52/144 (36.11%), Postives = 75/144 (52.08%), Query Frame = 1
Query:   46 KRVVVQQDGASPHTGKNNPEILHSAGMGRGWIVELVTQPAQSPDLNVNDLGFFASLKSRVWGMNASSIDELVETIFDQYEKYDGDTLERVWHSLFKVYNQTLRQLGNNDFSVEHTGVTARQRAGTLERVVKYDKEAFTTAWDYL 477
            K + +QQD A PH   N+PE L  A    G+ + L+ QPAQSPDLNV DLGFF  ++S        ++ ELV+++ D Y +YD  +L   W  L  V  + L+Q G N++   H G    +R   L    +  +     A D+L
Sbjct:  407 KTIWIQQDNARPHIFPNDPEFLEEANK-YGFDIHLICQPAQSPDLNVLDLGFFRGIQSLQHQKFPKNVTELVQSVHDAYMEYDPKSLNHTWLQLQYVMVEILKQKGGNNYKSPHQGKKRLERLRLLPTDTQIQQHIIDDAVDFL 549          
BLAST of mRNA_D-dichotoma_M_contig1004.131.1 vs. uniprot
Match: A0A484KKG0_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484KKG0_9ASTE)

HSP 1 Score: 92.8 bits (229), Expect = 1.050e-19
Identity = 47/149 (31.54%), Postives = 76/149 (51.01%), Query Frame = 1
Query:   46 KRVVVQQDGASPHTGKNNPEILHSAGMGRGWIVELVTQPAQSPDLNVNDLGFFASLKSRVWGMNASSIDELVETIFDQYEKYDGDTLERVWHSLFKVYNQTLRQLGNNDFSVEHTGVTARQRAGTLERVVKYDKEAFTTAWDYLASSPS 492
            K +++QQD A PH   N+PE +  A    G+ +EL  QP  SPDLN+ DLGFFAS++S     +  ++DELV+ +   Y   +   L  VW S      + ++  G N++ + H G    +R G L   ++   + +  +   L   P+
Sbjct:  111 KHIIIQQDNAKPHIDVNDPEFVQVANAD-GYSIELTCQPPNSPDLNILDLGFFASIQSLQHQTSTRNVDELVQHVAQAYANLEAKKLNYVWISYQLAMTEIMKVQGGNNYKLAHIGKARLEREGALPNQLQVSTKLYQASVCALQGVPA 258          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1004.131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE8.780e-3584.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3GU94_9STRA1.600e-2534.67Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
UPI00053F72366.820e-2236.30uncharacterized protein LOC104908485 n=1 Tax=Beta ... [more]
UPI000B7825C51.540e-2134.48uncharacterized protein LOC110701536 n=1 Tax=Cheno... [more]
A0A0N7L738_PLAHL3.860e-2138.78Predicted methyltransferase n=4 Tax=Plasmopara hal... [more]
UPI000B771AE92.350e-2033.54uncharacterized protein LOC110737253 n=1 Tax=Cheno... [more]
A0A7S2FC44_9STRA4.620e-2044.72Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
UPI000B778AD25.650e-2035.86uncharacterized protein LOC110722901 n=1 Tax=Cheno... [more]
UPI000B8A6B461.050e-1936.11uncharacterized protein LOC110779611 n=1 Tax=Spina... [more]
A0A484KKG0_9ASTE1.050e-1931.54Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1004contigD-dichotoma_M_contig1004:83759..84284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.6
Seed ortholog evalue7.5e-14
Seed eggNOG ortholog161934.XP_010670510.1
EggNOG OGs2CMKC@1,2QQNW@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size526
Cds size387
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1004.131.1prot_D-dichotoma_M_contig1004.131.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1004 83882..84268 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927482.8756108-UTR-D-dichotoma_M_contig1004:83758..838811622927482.8756108-UTR-D-dichotoma_M_contig1004:83758..83881Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1004 83759..83881 +
1690797993.754818-UTR-D-dichotoma_M_contig1004:83758..838811690797993.754818-UTR-D-dichotoma_M_contig1004:83758..83881Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1004 83759..83881 +
1622927482.9042063-UTR-D-dichotoma_M_contig1004:84268..842841622927482.9042063-UTR-D-dichotoma_M_contig1004:84268..84284Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1004 84269..84284 +
1690797993.7763124-UTR-D-dichotoma_M_contig1004:84268..842841690797993.7763124-UTR-D-dichotoma_M_contig1004:84268..84284Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1004 84269..84284 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927482.8907397-CDS-D-dichotoma_M_contig1004:83881..842681622927482.8907397-CDS-D-dichotoma_M_contig1004:83881..84268Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1004 83882..84268 +
1690797993.7675545-CDS-D-dichotoma_M_contig1004:83881..842681690797993.7675545-CDS-D-dichotoma_M_contig1004:83881..84268Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1004 83882..84268 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1004.131.1

>prot_D-dichotoma_M_contig1004.131.1 ID=prot_D-dichotoma_M_contig1004.131.1|Name=mRNA_D-dichotoma_M_contig1004.131.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=129bp
MGRGWIVELVTQPAQSPDLNVNDLGFFASLKSRVWGMNASSIDELVETIF
DQYEKYDGDTLERVWHSLFKVYNQTLRQLGNNDFSVEHTGVTARQRAGTL
ERVVKYDKEAFTTAWDYLASSPSDGEYG*
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mRNA from alignment at D-dichotoma_M_contig1004:83759..84284+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1004.131.1 ID=mRNA_D-dichotoma_M_contig1004.131.1|Name=mRNA_D-dichotoma_M_contig1004.131.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=526bp|location=Sequence derived from alignment at D-dichotoma_M_contig1004:83759..84284+ (Dictyota dichotoma ODC1387m male)
TCCCAGGCCGTCGTGAAGGCCTCCTTATCATATTTTACGCGTTCAAAGCG CGTAGTAGTGCAGCAGGACGGCGCGAGCCCCCACACGGGAAAAAACAATC CAGAGATTCTTCACTCAGCGGGGATGGGGCGGGGTTGGATAGTAGAGCTT GTCACGCAGCCTGCCCAGTCGCCTGACTTGAACGTCAACGACTTGGGCTT CTTCGCATCTCTAAAGTCAAGGGTATGGGGGATGAACGCCAGTTCGATAG ACGAGTTGGTGGAGACTATCTTCGACCAGTACGAGAAGTACGATGGGGAC ACTTTGGAACGGGTTTGGCACAGCCTCTTTAAGGTTTACAACCAGACACT ACGTCAGTTGGGCAATAACGACTTTAGTGTGGAGCATACCGGGGTGACGG CGCGCCAGAGGGCAGGAACGTTAGAACGGGTCGTAAAATATGATAAGGAG GCCTTCACGACGGCCTGGGACTACCTAGCATCAAGCCCCAGCGACGGCGA GTACGGTTAACGATTTTGTTTTTCCA
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1004:83759..84284+

>mRNA_D-dichotoma_M_contig1004.131.1 ID=mRNA_D-dichotoma_M_contig1004.131.1|Name=mRNA_D-dichotoma_M_contig1004.131.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=774bp|location=Sequence derived from alignment at D-dichotoma_M_contig1004:83759..84284+ (Dictyota dichotoma ODC1387m male)
ATGGGGCGGGGTTGGATAGTAGAGCTTGTCACGCAGCCTGCCCAGTCGCC
TGACTTGAACGTCAACGACTTGGGCTTCTTCGCATCTCTAAAGTCAAGGG
TATGGGGGATGAACGCCAGTTCGATAGACGAGTTGGTGGAGACTATCTTC
GACCAGTACGAGAAGTACGATGGGGACACTTTGGAACGGGTTTGGCACAG
CCTCTTTAAGGTTTACAACCAGACACTACGTCAGTTGGGCAATAACGACT
TTAGTGTGGAGCATACCGGGGTGACGGCGCGCCAGAGGGCAGGAACGTTA
GAACGGGTCGTAAAATATGATAAGGAGGCCTTCACGACGGCCTGGGACTA
CCTAGCATCAAGCCCCAGCGACGGCGAGTACGGTTAAATGGGGCGGGGTT
GGATAGTAGAGCTTGTCACGCAGCCTGCCCAGTCGCCTGACTTGAACGTC
AACGACTTGGGCTTCTTCGCATCTCTAAAGTCAAGGGTATGGGGGATGAA
CGCCAGTTCGATAGACGAGTTGGTGGAGACTATCTTCGACCAGTACGAGA
AGTACGATGGGGACACTTTGGAACGGGTTTGGCACAGCCTCTTTAAGGTT
TACAACCAGACACTACGTCAGTTGGGCAATAACGACTTTAGTGTGGAGCA
TACCGGGGTGACGGCGCGCCAGAGGGCAGGAACGTTAGAACGGGTCGTAA
AATATGATAAGGAGGCCTTCACGACGGCCTGGGACTACCTAGCATCAAGC
CCCAGCGACGGCGAGTACGGTTAA
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