mRNA_D-dichotoma_M_contig1004.129.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1004.129.1
Unique NamemRNA_D-dichotoma_M_contig1004.129.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1004.129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1004contigD-dichotoma_M_contig1004:80889..81388 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size502
Cds size390
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927482.747621-UTR-D-dichotoma_M_contig1004:80888..809981622927482.747621-UTR-D-dichotoma_M_contig1004:80888..80998Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1004 80889..80998 +
1690797993.6889029-UTR-D-dichotoma_M_contig1004:80888..809981690797993.6889029-UTR-D-dichotoma_M_contig1004:80888..80998Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1004 80889..80998 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927482.7657697-CDS-D-dichotoma_M_contig1004:80998..813881622927482.7657697-CDS-D-dichotoma_M_contig1004:80998..81388Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1004 80999..81388 +
1690797993.7028933-CDS-D-dichotoma_M_contig1004:80998..813881690797993.7028933-CDS-D-dichotoma_M_contig1004:80998..81388Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1004 80999..81388 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1004.129.1prot_D-dichotoma_M_contig1004.129.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1004 80999..81388 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1004.129.1

>prot_D-dichotoma_M_contig1004.129.1 ID=prot_D-dichotoma_M_contig1004.129.1|Name=mRNA_D-dichotoma_M_contig1004.129.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=130bp
MPLRSSMCRSSVSIQSVPSFPRSRNSKTACFKISIISIFIASLRVAYPKI
TISPDPGSTTKGILKRALPQGVTSERRRGTVCWVSLRSSPNDVRTRALPS
YGLISVTPRRVLANFTTNSSEIDVTLDPVS
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mRNA from alignment at D-dichotoma_M_contig1004:80889..81388+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1004.129.1 ID=mRNA_D-dichotoma_M_contig1004.129.1|Name=mRNA_D-dichotoma_M_contig1004.129.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=500bp|location=Sequence derived from alignment at D-dichotoma_M_contig1004:80889..81388+ (Dictyota dichotoma ODC1387m male)
CCGCTTTTTCAGCTTGATCTTGAGTGAGCACACCCACCGTACCGGACGCC
TCGACCGCCATATGTACCGATTGCTTCCCACACAGTATCGATCCAGGTCG
TTCATCGCACATGCCACTTAGGTCATCTATGTGTAGATCCTCCGTCTCAA
TCCAATCAGTCCCGTCCTTCCCACGGTCCCGCAACTCCAAAACTGCCTGC
TTCAAAATCTCTATCATATCAATATTCATCGCCTCCCTGAGGGTGGCCTA
TCCCAAGATTACGATATCCCCCGACCCTGGTAGCACAACGAAGGGCATCT
TGAAACGGGCTCTCCCCCAGGGCGTTACGAGCGAGAGAAGGAGGGGCACG
GTCTGCTGGGTGAGTTTACGCTCCTCCCCAAACGATGTTCGCACCCGCGC
ACTTCCCTCATACGGTCTCATCAGTGTTACCCCCCGGCGCGTGCTTGCCA
ACTTCACAACCAACTCCTCCGAAATAGATGTCACTCTCGACCCCGTATCA
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1004:80889..81388+

>mRNA_D-dichotoma_M_contig1004.129.1 ID=mRNA_D-dichotoma_M_contig1004.129.1|Name=mRNA_D-dichotoma_M_contig1004.129.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=780bp|location=Sequence derived from alignment at D-dichotoma_M_contig1004:80889..81388+ (Dictyota dichotoma ODC1387m male)
ATGCCACTTAGGTCATCTATGTGTAGATCCTCCGTCTCAATCCAATCAGT
CCCGTCCTTCCCACGGTCCCGCAACTCCAAAACTGCCTGCTTCAAAATCT
CTATCATATCAATATTCATCGCCTCCCTGAGGGTGGCCTATCCCAAGATT
ACGATATCCCCCGACCCTGGTAGCACAACGAAGGGCATCTTGAAACGGGC
TCTCCCCCAGGGCGTTACGAGCGAGAGAAGGAGGGGCACGGTCTGCTGGG
TGAGTTTACGCTCCTCCCCAAACGATGTTCGCACCCGCGCACTTCCCTCA
TACGGTCTCATCAGTGTTACCCCCCGGCGCGTGCTTGCCAACTTCACAAC
CAACTCCTCCGAAATAGATGTCACTCTCGACCCCGTATCAATGCCACTTA
GGTCATCTATGTGTAGATCCTCCGTCTCAATCCAATCAGTCCCGTCCTTC
CCACGGTCCCGCAACTCCAAAACTGCCTGCTTCAAAATCTCTATCATATC
AATATTCATCGCCTCCCTGAGGGTGGCCTATCCCAAGATTACGATATCCC
CCGACCCTGGTAGCACAACGAAGGGCATCTTGAAACGGGCTCTCCCCCAG
GGCGTTACGAGCGAGAGAAGGAGGGGCACGGTCTGCTGGGTGAGTTTACG
CTCCTCCCCAAACGATGTTCGCACCCGCGCACTTCCCTCATACGGTCTCA
TCAGTGTTACCCCCCGGCGCGTGCTTGCCAACTTCACAACCAACTCCTCC
GAAATAGATGTCACTCTCGACCCCGTATCA
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