mRNA_D-dichotoma_M_contig1004.128.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1004.128.1
Unique NamemRNA_D-dichotoma_M_contig1004.128.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig1004.128.1 vs. uniprot
Match: A0A6H5KIP6_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIP6_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 5.040e-19
Identity = 48/105 (45.71%), Postives = 54/105 (51.43%), Query Frame = 1 
Query:   16 RPQPPAQHIPTPGHPTWGKNGPYDSGSNTRYFQPKTQIPPGAPVPV---CPRCGRDGHTLDDCNATLRFNGNCAECGQFGHMRRHCIKAVRSHPQANIVHGGGVN 321
            RPQPP  H P P  PTWG  G YD G N  Y Q ++  P GA + V   C RCGR GH+L DCNA  RF GNC       H RR C    R      +  G G+N
Sbjct:  305 RPQPPPAHYPPPNFPTWGSGGLYDCGRNAVYPQEESASPQGALIGVVHQCVRCGRHGHSLGDCNAPRRFEGNCTAXXXXXHRRRMCCTIDRMQQHVPVGDGEGLN 409
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BLAST of mRNA_D-dichotoma_M_contig1004.128.1 vs. uniprot
Match: A0A6H5L4A7_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4A7_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 5.300e-19
Identity = 48/105 (45.71%), Postives = 54/105 (51.43%), Query Frame = 1 
Query:   16 RPQPPAQHIPTPGHPTWGKNGPYDSGSNTRYFQPKTQIPPGAPVPV---CPRCGRDGHTLDDCNATLRFNGNCAECGQFGHMRRHCIKAVRSHPQANIVHGGGVN 321
            RPQPP  H P P  PTWG  G YD G N  Y Q ++  P GA + V   C RCGR GH+L DCNA  RF GNC       H RR C    R      +  G G+N
Sbjct:  305 RPQPPPAHYPPPNFPTWGSGGLYDCGRNAVYPQEESASPQGALIGVVHQCVRCGRHGHSLGDCNAPRRFEGNCTAXXXXXHRRRMCCTIDRMQQHVPVGDGEGLN 409
[Close]
BLAST of mRNA_D-dichotoma_M_contig1004.128.1 vs. uniprot
Match: A0A6H5KYI1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYI1_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 5.470e-19
Identity = 48/105 (45.71%), Postives = 54/105 (51.43%), Query Frame = 1 
Query:   16 RPQPPAQHIPTPGHPTWGKNGPYDSGSNTRYFQPKTQIPPGAPVPV---CPRCGRDGHTLDDCNATLRFNGNCAECGQFGHMRRHCIKAVRSHPQANIVHGGGVN 321
            RPQPP  H P P  PTWG  G YD G N  Y Q ++  P GA + V   C RCGR GH+L DCNA  RF GNC       H RR C    R      +  G G+N
Sbjct:  305 RPQPPPAHYPPPNFPTWGSGGLYDCGRNAVYPQEESASPQGALIGVVHQCVRCGRHGHSLGDCNAPRRFEGNCTAXXXXXHRRRMCCTIDRMQQHVPVGDGEGLN 409
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1004.128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KIP6_9PHAE5.040e-1945.71CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5L4A7_9PHAE5.300e-1945.71CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5KYI1_9PHAE5.470e-1945.71CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1004contigD-dichotoma_M_contig1004:26759..27288 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size531
Cds size528
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927482.708267-CDS-D-dichotoma_M_contig1004:26758..272861622927482.708267-CDS-D-dichotoma_M_contig1004:26758..27286Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1004 26759..27286 +
1690797993.6773794-CDS-D-dichotoma_M_contig1004:26758..272861690797993.6773794-CDS-D-dichotoma_M_contig1004:26758..27286Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1004 26759..27286 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1004.128.1prot_D-dichotoma_M_contig1004.128.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1004 26759..27286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1004.128.1

>prot_D-dichotoma_M_contig1004.128.1 ID=prot_D-dichotoma_M_contig1004.128.1|Name=mRNA_D-dichotoma_M_contig1004.128.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=176bp
QQQQFRPQPPAQHIPTPGHPTWGKNGPYDSGSNTRYFQPKTQIPPGAPVP
VCPRCGRDGHTLDDCNATLRFNGNCAECGQFGHMRRHCIKAVRSHPQANI
VHGGGVNGCSYGGAGSSGPDGDGTWEQQQDGEIYGPGGVEYTQQPQEQQE
QLFPWGSNDGGRFFGRNDAVAEEMGG
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mRNA from alignment at D-dichotoma_M_contig1004:26759..27288+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1004.128.1 ID=mRNA_D-dichotoma_M_contig1004.128.1|Name=mRNA_D-dichotoma_M_contig1004.128.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=530bp|location=Sequence derived from alignment at D-dichotoma_M_contig1004:26759..27288+ (Dictyota dichotoma ODC1387m male)
CAGCAGCAGCAGTTCCGTCCCCAACCACCAGCACAGCACATCCCTACACC
GGGACATCCAACCTGGGGGAAGAATGGCCCCTACGACAGTGGCAGCAATA
CCAGGTACTTTCAACCCAAGACACAGATCCCTCCTGGTGCTCCTGTCCCC
GTGTGTCCGAGATGTGGAAGAGATGGACACACGCTCGATGACTGCAATGC
GACTCTTCGTTTCAATGGGAACTGTGCAGAATGCGGACAATTTGGGCATA
TGCGCCGCCATTGCATCAAAGCTGTACGTTCGCACCCACAGGCCAATATC
GTCCACGGCGGAGGGGTGAACGGCTGCAGCTATGGAGGGGCTGGAAGCTC
TGGACCTGATGGTGATGGTACATGGGAGCAGCAGCAAGATGGTGAGATCT
ATGGGCCGGGCGGTGTTGAGTATACGCAGCAGCCTCAGGAGCAGCAGGAA
CAACTGTTTCCTTGGGGAAGCAACGATGGAGGACGTTTCTTTGGGCGAAA
TGACGCTGTCGCCGAGGAGATGGGAGGAGG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1004:26759..27288+

>mRNA_D-dichotoma_M_contig1004.128.1 ID=mRNA_D-dichotoma_M_contig1004.128.1|Name=mRNA_D-dichotoma_M_contig1004.128.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1056bp|location=Sequence derived from alignment at D-dichotoma_M_contig1004:26759..27288+ (Dictyota dichotoma ODC1387m male)
CAGCAGCAGCAGTTCCGTCCCCAACCACCAGCACAGCACATCCCTACACC
GGGACATCCAACCTGGGGGAAGAATGGCCCCTACGACAGTGGCAGCAATA
CCAGGTACTTTCAACCCAAGACACAGATCCCTCCTGGTGCTCCTGTCCCC
GTGTGTCCGAGATGTGGAAGAGATGGACACACGCTCGATGACTGCAATGC
GACTCTTCGTTTCAATGGGAACTGTGCAGAATGCGGACAATTTGGGCATA
TGCGCCGCCATTGCATCAAAGCTGTACGTTCGCACCCACAGGCCAATATC
GTCCACGGCGGAGGGGTGAACGGCTGCAGCTATGGAGGGGCTGGAAGCTC
TGGACCTGATGGTGATGGTACATGGGAGCAGCAGCAAGATGGTGAGATCT
ATGGGCCGGGCGGTGTTGAGTATACGCAGCAGCCTCAGGAGCAGCAGGAA
CAACTGTTTCCTTGGGGAAGCAACGATGGAGGACGTTTCTTTGGGCGAAA
TGACGCTGTCGCCGAGGAGATGGGAGGACAGCAGCAGCAGTTCCGTCCCC
AACCACCAGCACAGCACATCCCTACACCGGGACATCCAACCTGGGGGAAG
AATGGCCCCTACGACAGTGGCAGCAATACCAGGTACTTTCAACCCAAGAC
ACAGATCCCTCCTGGTGCTCCTGTCCCCGTGTGTCCGAGATGTGGAAGAG
ATGGACACACGCTCGATGACTGCAATGCGACTCTTCGTTTCAATGGGAAC
TGTGCAGAATGCGGACAATTTGGGCATATGCGCCGCCATTGCATCAAAGC
TGTACGTTCGCACCCACAGGCCAATATCGTCCACGGCGGAGGGGTGAACG
GCTGCAGCTATGGAGGGGCTGGAAGCTCTGGACCTGATGGTGATGGTACA
TGGGAGCAGCAGCAAGATGGTGAGATCTATGGGCCGGGCGGTGTTGAGTA
TACGCAGCAGCCTCAGGAGCAGCAGGAACAACTGTTTCCTTGGGGAAGCA
ACGATGGAGGACGTTTCTTTGGGCGAAATGACGCTGTCGCCGAGGAGATG
GGAGGA
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