mRNA_D-dichotoma_M_contig1003.126.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1003.126.1
Unique NamemRNA_D-dichotoma_M_contig1003.126.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1003.126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1003contigD-dichotoma_M_contig1003:184957..185281 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size327
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927481.7092023-CDS-D-dichotoma_M_contig1003:184956..1852801622927481.7092023-CDS-D-dichotoma_M_contig1003:184956..185280Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1003 184957..185280 +
1690797992.979341-CDS-D-dichotoma_M_contig1003:184956..1852801690797992.979341-CDS-D-dichotoma_M_contig1003:184956..185280Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1003 184957..185280 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1003.126.1prot_D-dichotoma_M_contig1003.126.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1003 184957..185280 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1003.126.1

>prot_D-dichotoma_M_contig1003.126.1 ID=prot_D-dichotoma_M_contig1003.126.1|Name=mRNA_D-dichotoma_M_contig1003.126.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=108bp
PLKVQELYISLDVRSLPAITGFPPESTQRLTNSLRNVMMHIIKRCHHVAM
TVVRERWIPGWVDPLQRALQSTLVKSLAVHLPLFERLLAQAKQSVEQNLS
GREVFHTL
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mRNA from alignment at D-dichotoma_M_contig1003:184957..185281+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1003.126.1 ID=mRNA_D-dichotoma_M_contig1003.126.1|Name=mRNA_D-dichotoma_M_contig1003.126.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=325bp|location=Sequence derived from alignment at D-dichotoma_M_contig1003:184957..185281+ (Dictyota dichotoma ODC1387m male)
CCCCTGAAAGTTCAGGAACTTTACATCAGCCTAGATGTACGGTCGCTCCC
GGCGATCACGGGCTTCCCTCCCGAATCGACCCAGCGCCTTACAAACTCCT
TGCGTAACGTGATGATGCATATTATAAAGCGTTGTCATCACGTGGCGATG
ACCGTAGTCCGCGAACGCTGGATTCCGGGTTGGGTTGACCCTCTACAACG
CGCTCTTCAGTCAACCCTCGTTAAATCCCTGGCGGTACATTTGCCCCTTT
TTGAGCGCCTACTCGCTCAGGCCAAGCAGTCGGTAGAGCAGAACCTTTCC
GGCCGCGAAGTCTTCCATACTCTAC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1003:184957..185281+

>mRNA_D-dichotoma_M_contig1003.126.1 ID=mRNA_D-dichotoma_M_contig1003.126.1|Name=mRNA_D-dichotoma_M_contig1003.126.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=648bp|location=Sequence derived from alignment at D-dichotoma_M_contig1003:184957..185281+ (Dictyota dichotoma ODC1387m male)
CCCCTGAAAGTTCAGGAACTTTACATCAGCCTAGATGTACGGTCGCTCCC
GGCGATCACGGGCTTCCCTCCCGAATCGACCCAGCGCCTTACAAACTCCT
TGCGTAACGTGATGATGCATATTATAAAGCGTTGTCATCACGTGGCGATG
ACCGTAGTCCGCGAACGCTGGATTCCGGGTTGGGTTGACCCTCTACAACG
CGCTCTTCAGTCAACCCTCGTTAAATCCCTGGCGGTACATTTGCCCCTTT
TTGAGCGCCTACTCGCTCAGGCCAAGCAGTCGGTAGAGCAGAACCTTTCC
GGCCGCGAAGTCTTCCATACTCTACCCCTGAAAGTTCAGGAACTTTACAT
CAGCCTAGATGTACGGTCGCTCCCGGCGATCACGGGCTTCCCTCCCGAAT
CGACCCAGCGCCTTACAAACTCCTTGCGTAACGTGATGATGCATATTATA
AAGCGTTGTCATCACGTGGCGATGACCGTAGTCCGCGAACGCTGGATTCC
GGGTTGGGTTGACCCTCTACAACGCGCTCTTCAGTCAACCCTCGTTAAAT
CCCTGGCGGTACATTTGCCCCTTTTTGAGCGCCTACTCGCTCAGGCCAAG
CAGTCGGTAGAGCAGAACCTTTCCGGCCGCGAAGTCTTCCATACTCTA
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