mRNA_D-dichotoma_M_contig1001.108.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1001.108.1
Unique NamemRNA_D-dichotoma_M_contig1001.108.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1001.108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1001contigD-dichotoma_M_contig1001:54695..55066 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size373
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927480.153694-CDS-D-dichotoma_M_contig1001:54694..550661622927480.153694-CDS-D-dichotoma_M_contig1001:54694..55066Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1001 54695..55066 +
1690797991.838147-CDS-D-dichotoma_M_contig1001:54694..550661690797991.838147-CDS-D-dichotoma_M_contig1001:54694..55066Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1001 54695..55066 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1001.108.1prot_D-dichotoma_M_contig1001.108.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1001 54695..55066 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1001.108.1

>prot_D-dichotoma_M_contig1001.108.1 ID=prot_D-dichotoma_M_contig1001.108.1|Name=mRNA_D-dichotoma_M_contig1001.108.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=124bp
AITKDGPVIADEWRGGGRREGFPKAEGWFAAGDGQRGSKKGKGRSKGSGS
GGQNLKDRESQGEGSRGESRVSPSTRGDGSSVQRTDADGDTGEGEPVGPT
RIIISGEPTAEMLFPAGEKNSEDY
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mRNA from alignment at D-dichotoma_M_contig1001:54695..55066+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1001.108.1 ID=mRNA_D-dichotoma_M_contig1001.108.1|Name=mRNA_D-dichotoma_M_contig1001.108.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=372bp|location=Sequence derived from alignment at D-dichotoma_M_contig1001:54695..55066+ (Dictyota dichotoma ODC1387m male)
GCCATCACGAAGGATGGTCCAGTGATTGCTGACGAGTGGCGCGGGGGTGG
GAGAAGGGAAGGATTTCCCAAGGCAGAAGGGTGGTTTGCAGCAGGGGATG
GACAGCGTGGTTCAAAGAAGGGCAAGGGTCGTTCTAAGGGTTCAGGAAGC
GGAGGGCAGAACTTGAAAGATCGAGAGAGCCAGGGTGAAGGGAGCCGAGG
TGAGAGCAGAGTTTCACCCAGCACAAGAGGTGACGGGAGTAGCGTCCAAC
GCACTGATGCAGACGGCGACACCGGCGAAGGAGAACCAGTGGGCCCTACG
CGAATCATCATTTCGGGTGAGCCGACAGCAGAGATGCTTTTCCCTGCAGG
AGAAAAGAATTCTGAAGATTAT
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1001:54695..55066+

>mRNA_D-dichotoma_M_contig1001.108.1 ID=mRNA_D-dichotoma_M_contig1001.108.1|Name=mRNA_D-dichotoma_M_contig1001.108.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=744bp|location=Sequence derived from alignment at D-dichotoma_M_contig1001:54695..55066+ (Dictyota dichotoma ODC1387m male)
GCCATCACGAAGGATGGTCCAGTGATTGCTGACGAGTGGCGCGGGGGTGG
GAGAAGGGAAGGATTTCCCAAGGCAGAAGGGTGGTTTGCAGCAGGGGATG
GACAGCGTGGTTCAAAGAAGGGCAAGGGTCGTTCTAAGGGTTCAGGAAGC
GGAGGGCAGAACTTGAAAGATCGAGAGAGCCAGGGTGAAGGGAGCCGAGG
TGAGAGCAGAGTTTCACCCAGCACAAGAGGTGACGGGAGTAGCGTCCAAC
GCACTGATGCAGACGGCGACACCGGCGAAGGAGAACCAGTGGGCCCTACG
CGAATCATCATTTCGGGTGAGCCGACAGCAGAGATGCTTTTCCCTGCAGG
AGAAAAGAATTCTGAAGATTATGCCATCACGAAGGATGGTCCAGTGATTG
CTGACGAGTGGCGCGGGGGTGGGAGAAGGGAAGGATTTCCCAAGGCAGAA
GGGTGGTTTGCAGCAGGGGATGGACAGCGTGGTTCAAAGAAGGGCAAGGG
TCGTTCTAAGGGTTCAGGAAGCGGAGGGCAGAACTTGAAAGATCGAGAGA
GCCAGGGTGAAGGGAGCCGAGGTGAGAGCAGAGTTTCACCCAGCACAAGA
GGTGACGGGAGTAGCGTCCAACGCACTGATGCAGACGGCGACACCGGCGA
AGGAGAACCAGTGGGCCCTACGCGAATCATCATTTCGGGTGAGCCGACAG
CAGAGATGCTTTTCCCTGCAGGAGAAAAGAATTCTGAAGATTAT
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