mRNA_D-dichotoma_M_contig1.10.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1.10.1
Unique NamemRNA_D-dichotoma_M_contig1.10.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1contigD-dichotoma_M_contig1:335323..337074 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size1752
Cds size954
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1.10.1prot_D-dichotoma_M_contig1.10.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1 336078..337031 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927463.9068892-UTR-D-dichotoma_M_contig1:335322..3360771622927463.9068892-UTR-D-dichotoma_M_contig1:335322..336077Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1 335323..336077 +
1690797978.820992-UTR-D-dichotoma_M_contig1:335322..3360771690797978.820992-UTR-D-dichotoma_M_contig1:335322..336077Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1 335323..336077 +
1622927463.943515-UTR-D-dichotoma_M_contig1:337031..3370741622927463.943515-UTR-D-dichotoma_M_contig1:337031..337074Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1 337032..337074 +
1690797978.9279106-UTR-D-dichotoma_M_contig1:337031..3370741690797978.9279106-UTR-D-dichotoma_M_contig1:337031..337074Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1 337032..337074 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927463.925982-CDS-D-dichotoma_M_contig1:336077..3370311622927463.925982-CDS-D-dichotoma_M_contig1:336077..337031Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1 336078..337031 +
1690797978.8600118-CDS-D-dichotoma_M_contig1:336077..3370311690797978.8600118-CDS-D-dichotoma_M_contig1:336077..337031Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1 336078..337031 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1.10.1

>prot_D-dichotoma_M_contig1.10.1 ID=prot_D-dichotoma_M_contig1.10.1|Name=mRNA_D-dichotoma_M_contig1.10.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=318bp
MFPCRFAQAVVHRKFACTVLNLLFTTSRHHDSVERETSEMSLVTGDNLNA
GKSWGDEHTVELCTTSGHANCSAKTRQVTNNALEPLCAICVAAREAVKRE
RVKKDMRAGTINVENESPDTDKPKRQNRKRLTMGQKMQMIDQAMTDLGSL
SAVFDDLSWMVLAVDNVESNPCAMELIGALRKFGIEPGRSPDQAAVDTIA
EWAVVEDREDVAYLLRSDIEEIILEATTGKRKGNCDNTTRQSREGESDKS
DKEDTVGSMRRLEDNIFHLRIAEERPVESGDHRLSRLLREFSKSLFRGTS
AQESVATFASDDRPHGM*
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mRNA from alignment at D-dichotoma_M_contig1:335323..337074+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1.10.1 ID=mRNA_D-dichotoma_M_contig1.10.1|Name=mRNA_D-dichotoma_M_contig1.10.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=1752bp|location=Sequence derived from alignment at D-dichotoma_M_contig1:335323..337074+ (Dictyota dichotoma ODC1387m male)
ATGTACTCTATGTACTCTATGTACTCTATGTACTCTATGTACTCCATGTA
CTCCATGTACTCCATGTACTCTATGTACTCTATGTACTCTATGTACTCTA
TGTACTCTATGTACTCTATGTACTCTATGTACTCTATGACGAACCATCGG
CGGCAGAAGAGCATCGGGCAAGCAGGGACAGGGCAGGGGTAGGGGTGGTG
TGCTCAGTATATTTTGTCATTCGTCGCCCATGATGTGATGTTGTTGCAGT
GACGAAGGCGGGGCATGACGGAGTAATAGTATTTATTATTATTATATTCA
CAAAAAGACTCTACTGTGGTGCAGCTGTGGAGAGAAGAGTTGAAGACCGA
AAAGACATCGCCGTTGGTTCGATATTAGGATGTTGATAGCATAGAACAAT
ATAATAATAGCGTATAGCAGCAAAATAATACTACTACACAGTACAACAGT
AGATACTGCACCACCATCACCACGGGAGAGGAGCGGGGTATGCTCGTCGC
CAAAAGATCTTTCCGTTTTGAATAATATCATATGATAACGCTGTTTATTT
CCAACTGAGTTGAAGATGAGTTAAACACCACCTTTAGATGCCCACGTTGT
GGGCTAGTGATATTCCACCCAGTGATAGTTCTGAAACCGCCCGCACTAGT
ATTAAGCGTCCGAAGGGTTAATAATCTCGAAGGGAGAGGAATGTTCCCGG
CCGGTATGGGGACAACGCCACCAAACTTCCTGTATCGTCGTAGGTTTGCT
GAATCATGTTTCCCTGTAGATTTGCTCAAGCTGTGGTTCACCGCAAATTC
GCATGTACAGTACTCAATCTTCTGTTCACCACAAGTCGCCATCACGATAG
TGTAGAGAGAGAGACGAGTGAGATGTCGTTGGTCACAGGAGATAACCTTA
ACGCCGGCAAATCTTGGGGTGATGAACATACTGTTGAGTTGTGCACTACT
TCTGGGCACGCTAATTGCTCCGCAAAGACACGGCAAGTGACAAACAACGC
CTTAGAACCTCTGTGCGCGATCTGCGTTGCTGCCCGTGAAGCTGTCAAGA
GAGAAAGGGTAAAGAAGGATATGCGAGCAGGGACTATCAACGTCGAAAAT
GAATCGCCCGACACTGATAAGCCCAAACGTCAGAATCGAAAAAGGCTGAC
GATGGGTCAGAAGATGCAGATGATAGATCAAGCGATGACGGATTTGGGAA
GCCTGTCTGCAGTATTTGACGATCTCAGTTGGATGGTTCTTGCTGTTGAT
AACGTAGAAAGCAACCCATGTGCTATGGAACTCATTGGGGCGTTGCGCAA
ATTCGGCATTGAACCGGGTAGGAGTCCTGATCAGGCGGCGGTAGATACCA
TTGCTGAGTGGGCAGTAGTGGAAGACAGGGAAGATGTTGCTTACCTCCTG
CGTTCTGACATAGAGGAAATAATCCTTGAGGCGACTACAGGGAAGAGGAA
AGGCAATTGCGACAACACCACTAGGCAGAGCAGGGAAGGAGAGAGCGACA
AATCAGACAAGGAGGACACAGTAGGGTCCATGCGTAGACTAGAAGACAAT
ATCTTTCATCTTCGCATTGCGGAGGAGCGACCGGTGGAAAGTGGTGATCA
CAGGTTGAGTAGACTCCTGAGGGAATTCTCCAAGTCGTTGTTTCGTGGTA
CATCAGCCCAAGAGTCGGTTGCAACATTTGCGAGTGACGACAGACCCCAT
GGAATGTGAATACACAGTGATAGCAATCAATTCAAAGTGGTAAACAACTC
AC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1:335323..337074+

>mRNA_D-dichotoma_M_contig1.10.1 ID=mRNA_D-dichotoma_M_contig1.10.1|Name=mRNA_D-dichotoma_M_contig1.10.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1908bp|location=Sequence derived from alignment at D-dichotoma_M_contig1:335323..337074+ (Dictyota dichotoma ODC1387m male)
ATGTTTCCCTGTAGATTTGCTCAAGCTGTGGTTCACCGCAAATTCGCATG
TACAGTACTCAATCTTCTGTTCACCACAAGTCGCCATCACGATAGTGTAG
AGAGAGAGACGAGTGAGATGTCGTTGGTCACAGGAGATAACCTTAACGCC
GGCAAATCTTGGGGTGATGAACATACTGTTGAGTTGTGCACTACTTCTGG
GCACGCTAATTGCTCCGCAAAGACACGGCAAGTGACAAACAACGCCTTAG
AACCTCTGTGCGCGATCTGCGTTGCTGCCCGTGAAGCTGTCAAGAGAGAA
AGGGTAAAGAAGGATATGCGAGCAGGGACTATCAACGTCGAAAATGAATC
GCCCGACACTGATAAGCCCAAACGTCAGAATCGAAAAAGGCTGACGATGG
GTCAGAAGATGCAGATGATAGATCAAGCGATGACGGATTTGGGAAGCCTG
TCTGCAGTATTTGACGATCTCAGTTGGATGGTTCTTGCTGTTGATAACGT
AGAAAGCAACCCATGTGCTATGGAACTCATTGGGGCGTTGCGCAAATTCG
GCATTGAACCGGGTAGGAGTCCTGATCAGGCGGCGGTAGATACCATTGCT
GAGTGGGCAGTAGTGGAAGACAGGGAAGATGTTGCTTACCTCCTGCGTTC
TGACATAGAGGAAATAATCCTTGAGGCGACTACAGGGAAGAGGAAAGGCA
ATTGCGACAACACCACTAGGCAGAGCAGGGAAGGAGAGAGCGACAAATCA
GACAAGGAGGACACAGTAGGGTCCATGCGTAGACTAGAAGACAATATCTT
TCATCTTCGCATTGCGGAGGAGCGACCGGTGGAAAGTGGTGATCACAGGT
TGAGTAGACTCCTGAGGGAATTCTCCAAGTCGTTGTTTCGTGGTACATCA
GCCCAAGAGTCGGTTGCAACATTTGCGAGTGACGACAGACCCCATGGAAT
GTGAATGTTTCCCTGTAGATTTGCTCAAGCTGTGGTTCACCGCAAATTCG
CATGTACAGTACTCAATCTTCTGTTCACCACAAGTCGCCATCACGATAGT
GTAGAGAGAGAGACGAGTGAGATGTCGTTGGTCACAGGAGATAACCTTAA
CGCCGGCAAATCTTGGGGTGATGAACATACTGTTGAGTTGTGCACTACTT
CTGGGCACGCTAATTGCTCCGCAAAGACACGGCAAGTGACAAACAACGCC
TTAGAACCTCTGTGCGCGATCTGCGTTGCTGCCCGTGAAGCTGTCAAGAG
AGAAAGGGTAAAGAAGGATATGCGAGCAGGGACTATCAACGTCGAAAATG
AATCGCCCGACACTGATAAGCCCAAACGTCAGAATCGAAAAAGGCTGACG
ATGGGTCAGAAGATGCAGATGATAGATCAAGCGATGACGGATTTGGGAAG
CCTGTCTGCAGTATTTGACGATCTCAGTTGGATGGTTCTTGCTGTTGATA
ACGTAGAAAGCAACCCATGTGCTATGGAACTCATTGGGGCGTTGCGCAAA
TTCGGCATTGAACCGGGTAGGAGTCCTGATCAGGCGGCGGTAGATACCAT
TGCTGAGTGGGCAGTAGTGGAAGACAGGGAAGATGTTGCTTACCTCCTGC
GTTCTGACATAGAGGAAATAATCCTTGAGGCGACTACAGGGAAGAGGAAA
GGCAATTGCGACAACACCACTAGGCAGAGCAGGGAAGGAGAGAGCGACAA
ATCAGACAAGGAGGACACAGTAGGGTCCATGCGTAGACTAGAAGACAATA
TCTTTCATCTTCGCATTGCGGAGGAGCGACCGGTGGAAAGTGGTGATCAC
AGGTTGAGTAGACTCCTGAGGGAATTCTCCAAGTCGTTGTTTCGTGGTAC
ATCAGCCCAAGAGTCGGTTGCAACATTTGCGAGTGACGACAGACCCCATG
GAATGTGA
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