mRNA_D-herbacea_F_contig102.343.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig102.343.1
Unique NamemRNA_D-herbacea_F_contig102.343.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
[Close]
BLAST of mRNA_D-herbacea_F_contig102.343.1 vs. uniprot
Match: D8LKT1_ECTSI (Dual specificity protein phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKT1_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 8.600e-39
Identity = 65/87 (74.71%), Postives = 73/87 (83.91%), Query Frame = 3 
Query:    3 GVCSSVFLAELLPWMEKQAGEMEGKLSCPNASCGARLGSLKWTGAQCSCGSWVTPAIQFSKKNLDVRSAIPVGAPPGTVVHASLLEA 263
            G CSS+FL+E   WM++QAGEMEGKLSCPN +CGARLGSLKWTGAQCSCGSW+TPAIQF +KNLD R  +  G PPGTVVH SLL A
Sbjct:   83 GPCSSIFLSEPKRWMKQQAGEMEGKLSCPNKACGARLGSLKWTGAQCSCGSWITPAIQFPRKNLDARPRVSTGPPPGTVVHPSLLAA 169
[Close]
BLAST of mRNA_D-herbacea_F_contig102.343.1 vs. uniprot
Match: W4G7N2_9STRA (C2H2-type domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G7N2_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 5.010e-18
Identity = 43/92 (46.74%), Postives = 60/92 (65.22%), Query Frame = 3 
Query:    9 CSSVFLAELLPWMEKQAGEMEGKLSCPNASCGARLGSLKWTGAQCSCGSWVTPAIQFSKKNLDVRSAIPVGAPPGTVVHASLLEARVGPTGA 284
            CSS FL +   WM+ +A   EGKL CP A C ARLGS  W+G+QCSCG+WVTP++QF+K  +DV+  + + A     V+  ++E+ V   GA
Sbjct:   52 CSSFFLVDTKEWMD-EASLAEGKLLCPVAKCNARLGSFGWSGSQCSCGTWVTPSVQFTKSRVDVKLKMNIQA-----VYVPVVESAVAAVGA 137
[Close]
BLAST of mRNA_D-herbacea_F_contig102.343.1 vs. uniprot
Match: A0A024UKQ3_9STRA (C2H2-type domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UKQ3_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.730e-17
Identity = 41/85 (48.24%), Postives = 58/85 (68.24%), Query Frame = 3 
Query:    9 CSSVFLAELLPWMEKQAGEMEGKLSCPNASCGARLGSLKWTGAQCSCGSWVTPAIQFSKKNLDVRSAIPVGAPPGTVVHASLLEA 263
            CSS FL++   WM+ +A   EGKL CP A C +RLGS  W+G+QCSCG+WVTP++QF+K  +DV+  + + A    VV A+ + A
Sbjct:   86 CSSYFLSDTKEWMD-EASLAEGKLFCPVAKCNSRLGSFGWSGSQCSCGTWVTPSVQFTKSRVDVKVKMAIPAVFVPVVEAAAVAA 169
[Close]
BLAST of mRNA_D-herbacea_F_contig102.343.1 vs. uniprot
Match: A0A485L5N9_9STRA (Aste57867_16448 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L5N9_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 7.800e-17
Identity = 35/65 (53.85%), Postives = 49/65 (75.38%), Query Frame = 3 
Query:    9 CSSVFLAELLPWMEKQAGEMEGKLSCPNASCGARLGSLKWTGAQCSCGSWVTPAIQFSKKNLDVR 203
            CSS FLA+   WM++ A   +GK+ CP A C +RLGS  W+G+QCSCG+W+TP+IQF+K  +DV+
Sbjct:   51 CSSYFLADTKDWMDENA-VADGKIFCPVAKCNSRLGSFNWSGSQCSCGTWITPSIQFTKSRVDVK 114
[Close]
BLAST of mRNA_D-herbacea_F_contig102.343.1 vs. uniprot
Match: A0A7S1XM93_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XM93_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 3.220e-13
Identity = 34/74 (45.95%), Postives = 46/74 (62.16%), Query Frame = 3 
Query:    9 CSSVFLAELLPWMEKQAGEMEGKLSCPNASCGARLGSLKWTGAQCSCGSWVTPAIQFSKKNLDVRSAIPVGAPP 230
            CSS+FLAE   W       +EG++ CPN  C +R+GSL W+GAQCSCG+W+TPA Q     +D ++      PP
Sbjct:   47 CSSLFLAEPPEWSTL----VEGRIDCPNERCRSRIGSLSWSGAQCSCGTWITPAFQIVLSKVDAKARRRRAPPP 116
[Close]
BLAST of mRNA_D-herbacea_F_contig102.343.1 vs. uniprot
Match: L8H570_ACACA (Hyvh1 dual specificity phosphatase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H570_ACACA)

HSP 1 Score: 75.1 bits (183), Expect = 3.300e-13
Identity = 35/65 (53.85%), Postives = 45/65 (69.23%), Query Frame = 3 
Query:    9 CSSVFLAELLPWMEKQAGEMEGKLSCPNASCGARLGSLKWTGAQCSCGSWVTPAIQFSKKNLDVR 203
            C+S+F+ + L WM + A ++EGKL CP   C  R+GS  W+GAQCSCG W TPAIQ  KK +D R
Sbjct:   73 CTSLFMHDKLEWMGELA-DVEGKLVCPR--CAYRVGSYHWSGAQCSCGHWSTPAIQLQKKRIDER 134
[Close]
BLAST of mRNA_D-herbacea_F_contig102.343.1 vs. uniprot
Match: A0A7S2IHN1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IHN1_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 6.610e-13
Identity = 36/65 (55.38%), Postives = 43/65 (66.15%), Query Frame = 3 
Query:    6 VCSSVFLAELLPWMEKQAGEMEGKLSCPNASCGARLGSLKWTGAQCSCGSWVTPAIQFSKKNLDV 200
            VC SVFLA+ L WM       EGKL+CP  SC  ++G  KW G+QCSCG+WVTPAIQ     +DV
Sbjct:   88 VCDSVFLAQELDWMG-DISAFEGKLNCPKCSC--KVGHWKWAGSQCSCGTWVTPAIQVPLGRVDV 149
[Close]
BLAST of mRNA_D-herbacea_F_contig102.343.1 vs. uniprot
Match: A0A7S2Y1A4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1A4_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 6.750e-13
Identity = 33/63 (52.38%), Postives = 37/63 (58.73%), Query Frame = 3 
Query:    9 CSSVFLAELLPWMEKQAGEMEGKLSCPNASCGARLGSLKWTGAQCSCGSWVTPAIQFSKKNLD 197
            C S FL E L WM      +EGKL CPN  C  RLG   W G+QCSCGSWV PA+Q     +D
Sbjct:   46 CGSYFLKESLEWMGPM-DHLEGKLFCPNPRCKTRLGHYNWAGSQCSCGSWVAPALQVPMSKVD 107
[Close]
BLAST of mRNA_D-herbacea_F_contig102.343.1 vs. uniprot
Match: A0A6U2PMU6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A6U2PMU6_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 6.910e-13
Identity = 37/86 (43.02%), Postives = 50/86 (58.14%), Query Frame = 3 
Query:    9 CSSVFLAELLPWMEKQAGEMEGKLSCPNASCGARLGSLKWTGAQCSCGSWVTPAIQFSKKNLDVRSAIPV---GAPPGTVVHASLL 257
            CSSVFL+  L WM   +   EG+L CP   CG+++G   W G QCSCGSW+TPAI F    +D++  I +         V+H S+L
Sbjct:   78 CSSVFLSSGLDWMGDMSA-FEGRLDCPK--CGSKVGQWNWGGTQCSCGSWITPAIYFPMSKVDLKRPIQIDRTSTEDAAVMHQSVL 160
[Close]
BLAST of mRNA_D-herbacea_F_contig102.343.1 vs. uniprot
Match: A0A7N2M3W0_QUELO (Uncharacterized protein n=1 Tax=Quercus lobata TaxID=97700 RepID=A0A7N2M3W0_QUELO)

HSP 1 Score: 74.7 bits (182), Expect = 7.330e-13
Identity = 37/65 (56.92%), Postives = 44/65 (67.69%), Query Frame = 3 
Query:    9 CSSVFLAELLPWMEK-QAGEMEGKLSCPNASCGARLGSLKWTGAQCSCGSWVTPAIQFSKKNLDV 200
            CSS+F+ E L WM   + G MEGKLSC  A C ARLG   W+G QCSCGSW+TPA Q  K  +D+
Sbjct:   92 CSSIFV-EPLQWMTAVKEGAMEGKLSC--AHCEARLGFFNWSGIQCSCGSWITPAFQIHKSRVDI 153
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig102.343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKT1_ECTSI8.600e-3974.71Dual specificity protein phosphatase n=1 Tax=Ectoc... [more]
W4G7N2_9STRA5.010e-1846.74C2H2-type domain-containing protein n=3 Tax=Aphano... [more]
A0A024UKQ3_9STRA2.730e-1748.24C2H2-type domain-containing protein n=1 Tax=Aphano... [more]
A0A485L5N9_9STRA7.800e-1753.85Aste57867_16448 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S1XM93_9STRA3.220e-1345.95Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
L8H570_ACACA3.300e-1353.85Hyvh1 dual specificity phosphatase n=1 Tax=Acantha... [more]
A0A7S2IHN1_9STRA6.610e-1355.38Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A7S2Y1A4_9STRA6.750e-1352.38Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A6U2PMU6_9STRA6.910e-1343.02Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7N2M3W0_QUELO7.330e-1356.92Uncharacterized protein n=1 Tax=Quercus lobata Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig102contigD-herbacea_F_contig102:231595..235112 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.1
Seed ortholog evalue5.3e-27
Seed eggNOG ortholog2880.D8LKT1
KEGG koko:K09054,ko:K14165,ko:K14819
KEGG Pathwayko04141,ko05010,map04141,map05010
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phosphatase
EggNOG OGsCOG2453@1,KOG1716@2759
EC3.1.3.16,3.1.3.48
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko03000,ko03009
Exons3
Model size850
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig102.343.1prot_D-herbacea_F_contig102.343.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig102 232059..233371 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927432.6955428-UTR-D-herbacea_F_contig102:231594..2320581622927432.6955428-UTR-D-herbacea_F_contig102:231594..232058Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig102 231595..232058 -
1690790167.5359876-UTR-D-herbacea_F_contig102:231594..2320581690790167.5359876-UTR-D-herbacea_F_contig102:231594..232058Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig102 231595..232058 -
1622927432.728696-UTR-D-herbacea_F_contig102:233371..2333721622927432.728696-UTR-D-herbacea_F_contig102:233371..233372Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig102 233372..233372 -
1690790167.56429-UTR-D-herbacea_F_contig102:233371..2333721690790167.56429-UTR-D-herbacea_F_contig102:233371..233372Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig102 233372..233372 -
1622927432.7371655-UTR-D-herbacea_F_contig102:235069..2351121622927432.7371655-UTR-D-herbacea_F_contig102:235069..235112Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig102 235070..235112 -
1690790167.573308-UTR-D-herbacea_F_contig102:235069..2351121690790167.573308-UTR-D-herbacea_F_contig102:235069..235112Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig102 235070..235112 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927432.7096896-CDS-D-herbacea_F_contig102:232058..2322971622927432.7096896-CDS-D-herbacea_F_contig102:232058..232297Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig102 232059..232297 -
1690790167.545595-CDS-D-herbacea_F_contig102:232058..2322971690790167.545595-CDS-D-herbacea_F_contig102:232058..232297Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig102 232059..232297 -
1622927432.7194867-CDS-D-herbacea_F_contig102:233268..2333711622927432.7194867-CDS-D-herbacea_F_contig102:233268..233371Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig102 233269..233371 -
1690790167.5539765-CDS-D-herbacea_F_contig102:233268..2333711690790167.5539765-CDS-D-herbacea_F_contig102:233268..233371Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig102 233269..233371 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig102.343.1

>prot_D-herbacea_F_contig102.343.1 ID=prot_D-herbacea_F_contig102.343.1|Name=mRNA_D-herbacea_F_contig102.343.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=114bp
MEKQAGEMEGKLSCPNASCGARLGSLKWTGAQCSCGSWVTPAIQFSKKNL
DVRSAIPVGAPPGTVVHASLLEARVGPTGARRGGRDTDADGEDAAARDRR
DEQTVVAAAIKKR*
back to top

mRNA from alignment at D-herbacea_F_contig102:231595..235112-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig102.343.1 ID=mRNA_D-herbacea_F_contig102.343.1|Name=mRNA_D-herbacea_F_contig102.343.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=3518bp|location=Sequence derived from alignment at D-herbacea_F_contig102:231595..235112- (Desmarestia herbacea DmunF female)
AGGGCGTGTGCTCGTCCGTCTTCCTCGCGGAGCTTTTACCGTGGTGAGAT
TAAAACATGAGTGTCGCGTGCTCCCTTCACCTATGTTACGCCTCTCTGCG
GCTTGCACTTTTAAGCCTATACGAAGTATGACAATGAATTGAACACGGCT
ACTCGTACGGGAAAAAAAAATGATTCGAATCGCACAGATTGCTGCAGCAA
GGACTGGCGAATGCCCGCATGCCAGCTGCTTGCTGCTGCAAAATAATAAT
AATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA
TAATAATAATAATAATAATAATAAGAATAAGAATAATAATAATAATAATA
ATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAT
AATAATAATAATAATAATAATAATAATAATAATAAGTAATAAGTAATAAT
ATAGTAGACAAGGGCGCCTAGGCAGGCTCGCGAGTGTGGCAGGAATTGGG
GACGCTTATACTAGGTCAGTACTACTATACATTCATGAATGTTTATGAGC
TCCATCCTTTGACATGTTGCTATGCTTTAGGGAGATTCAGGCTGTAATAC
TACTACTGTTCGACATTTTCGTCTCACGACTTAACAACCAGTCTATGACC
CTTATGCTAAAAAGTGTTGCATTTTTGCAGTACCAGCTGGGCCAGACATG
AGATGGTTAAGGTTAGATTTATTGGTAGTTCGTCACCCCCAATTTTTTCG
AGAAATCGTGGGTGTAACAAAGGAACTGGCTTGTGCACTTTTTTTTAGCT
TGTACTTTTGGCTCGAAATGTGATGATTTTCATGAACGTGTGGAAAATTT
TATGGCAAAACTCAAGAAAAGAAATAAAAATAGGGAGTGCACAAGATAAT
CGTTCGGCAGGAGCACTTCAAATAATGGAATCGAAAACCGTCCTATGGCT
GGGTCAGCTCGTAGTATTCGCGGGCAATTGGGGTGTTTATTGTTTTCGTT
CAAAAACTATTCTGCTCTTCTTTGTTGTTTTTTCGCTAGCGTGAGTGCAA
CGCGTAGCTGCTCCAGTCTTCAGTGACGACAGGTGTCTACTTTGTATGAC
GCTGCTTGCTTGCCGATACGGTGGTGTTGTCGGCGCTGTCGCAATACCTT
TTGCCGTTATGAACGGCACTTGAAGATACTAGTTATGCCGGTAATTTAGC
TATCGAGCCAACAGCAGTACAACGTTACACACAGCAGTACTATTGCTGCT
ACTACTACTACAACTTCGTACAGACATGTATTAGTATCATCATGGAGTTT
GATCCATGCACCACTCCATGCAGCAGTGGTAGCAAGAGTAGCGCTGTATC
TAACCCATGCCCGAAGGGTACCAGTAGCAGACAGCACGCAGTAATAATAG
CCCTTGCCTGAAAAAGGGCAAACAGCGGGCGGTAGTAGTAACAGTCTTGT
AGTGTCCACGCTCTCTCTCCAGGCCTTTTCGCCATGCCATCCTCCTGGTT
TTATGTATTTTTTTACGTGTGTGTAGATCCCGGAGCTGTGACACAGCCAC
GTTCTGCCGCTGCCACTGCTGCTGCTACCGTAGGTAACAGGGCTCTTTTT
GAAACGGCCACGCTCTACTCGCACGCTTAACCGGGTTTTCGAGGTACACG
ACGGGGACAATGGTTGTTTTCGCTCTTACGCCCAAAGTTGCGTTTTGCCC
GTCTATGGGACGTCGTTGACCTTTTTCTTGTTTCGCGCAGGATGGAGAAG
CAGGCTGGGGAGATGGAGGGGAAGCTGTCCTGCCCCAACGCGAGTTGTGG
GGCGCGCTTGGGCTCTCTCAAGTGGACCGGGGCACAATGCTCATGTAAGT
ATATCAGAATCCTGCATGTCCGGCACTTTAATACACTTTTAACCACGGGC
CTCACATCCACGGCACGTATGTATGGTGCAATCCCGGCCTTTCGTTGCTG
CGCTTGGTTCTCCAAATGGTTGTTTTTTGTTTTATTGTTGCGGCGAAAGG
TATAACCGTATCGCTTTTGAGTGATTCATTGAGTAATTCGTTGATTCGTT
GATTGCTTCATTGATTCATTTATTCACTGATTGGTTGGTTTGTTGATTGA
TGATTGATTGATTGGTTCGTTGATTGATTGATTGATTGATTGATTGATTA
TTTGACTGATTGGTTCGTTGGTTGGTTGGTCAATTGGTTGGTTTGTTCGT
TGGTTGATGATTGATTGATTGATTGATTGAATGATTGATTGATTGCTTGA
TTGATTGATTGATTGATTTATTGATTTATTGATATATTGATATATTGATT
TATTGATTGATCGCGTATCACATTACCTGATTCGCCAAACGTGGCTTCCG
CCATGACCATGAAGGAAGAACCATGGAAATCATATTAATAGAAGAAATAG
CAAAATGTAGAAAAGGGGAAAACATGCCATCATTATAAGAACTGTTGATA
ACAAGATAGCCAAAAGGAGCAATCGCGTTTCTGTGACCTCCATATAAAAG
TACCCACAAAATAAAGAATTAAAATACGACAAACAGTAAAACACTGTCCA
CTGTCGTTTGCTATCGCTTGCTGTCTTCGAAGGTCGTCCCGAGGACACAG
CGGAGCAATCCGCGATTTTTTTTTTTTTGGCTTGATTTTTCCCTGAATCC
TCCGTTAGCCCCCCCCCCCCTACCCCCCTCTGAAAACACGCCGCCGGCAC
TCAAAACTCCAATTATTTTGTGCCGCTACGTATGCATACTTCGAAGTACC
TATTTATAAGCGTTTGTCAATTGTGGTGGCTCAAAACACGTGCTGTGTCA
ACTTCGCGTGAGCAGGCGGCTCGTGGGTCACTCCTGCCATCCAATTCTCA
AAGAAAAATCTGGACGTGCGCTCGGCTATCCCTGTGGGGGCTCCACCGGG
CACCGTAGTGCATGCGTCTCTGCTGGAAGCTAGGGTCGGCCCCACAGGAG
CACGACGCGGGGGCCGAGATACGGACGCGGACGGAGAAGATGCAGCAGCG
AGGGATCGAAGAGACGAGCAGACAGTAGTAGCGGCAGCAATAAAGAAACG
ATAAATGGATGGCGGTGATGGTGTTACGTAGTGTGCCGCCGATAGAGGTA
GATAAGGCGACGGCGTCGTGGGCAGAAGACGGAGCTTTGCGGTAGAGCTA
TTACTAGTTTTCGCTGATCTCGAGGTGGCGTCAGTAAATTCGGACGTGGT
GTTTTTGCTTGTTGGTTGTTGCAGCAAGCTCACCCCCTACATACTTCGAA
GTATGATATAATAGTGGTATATTTTTTCGTTTTTTGGCTGTGATATACTT
CGTAGTAGCTCCTTAAGTATTTATTTTAGTTCGTTGCGAAGGATTTTTCT
ACTTTGTGTGCCTCGTCAAATCTGACCCGTGACTACTGTAGGCAGGCCAA
TCGATTTGACGGTTGTCAATTCCTCCATACATCAGATAACCAACCAACCA
ACAAATCAATCAATCAATCAATCAATCAATCAATCATTCAGCTCCATATA
AGCTCCCCGGAAACCGGA
back to top

Coding sequence (CDS) from alignment at D-herbacea_F_contig102:231595..235112-

>mRNA_D-herbacea_F_contig102.343.1 ID=mRNA_D-herbacea_F_contig102.343.1|Name=mRNA_D-herbacea_F_contig102.343.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=684bp|location=Sequence derived from alignment at D-herbacea_F_contig102:231595..235112- (Desmarestia herbacea DmunF female)
ATGGAGAAGCAGGCTGGGGAGATGGAGGGGAAGCTGTCCTGCCCCAACGC
GAGTTGTGGGGCGCGCTTGGGCTCTCTCAAGTGGACCGGGGCACAATGCT
CATATGGAGAAGCAGGCTGGGGAGATGGAGGGGAAGCTGTCCTGCCCCAA
CGCGAGTTGTGGGGCGCGCTTGGGCTCTCTCAAGTGGACCGGGGCACAAT
GCTCATGCGGCTCGTGGGTCACTCCTGCCATCCAATTCTCAAAGAAAAAT
CTGGACGTGCGCTCGGCTATCCCTGTGGGGGCTCCACCGGGCACCGTAGT
GCATGCGTCTCTGCTGGAAGCTAGGGTCGGCCCCACAGGAGCACGACGCG
GGGGCCGAGATACGGACGCGGACGGAGAAGATGCAGCAGCGAGGGATCGA
AGAGACGAGCAGACAGTAGTAGCGGCAGCAATAAAGAAACGATAAGCGGC
TCGTGGGTCACTCCTGCCATCCAATTCTCAAAGAAAAATCTGGACGTGCG
CTCGGCTATCCCTGTGGGGGCTCCACCGGGCACCGTAGTGCATGCGTCTC
TGCTGGAAGCTAGGGTCGGCCCCACAGGAGCACGACGCGGGGGCCGAGAT
ACGGACGCGGACGGAGAAGATGCAGCAGCGAGGGATCGAAGAGACGAGCA
GACAGTAGTAGCGGCAGCAATAAAGAAACGATAA
back to top