mRNA_D-herbacea_F_contig102.341.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig102.341.1
Unique NamemRNA_D-herbacea_F_contig102.341.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig102.341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig102contigD-herbacea_F_contig102:204617..209707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons3
Model size1006
Cds size987
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig102.341.1prot_D-herbacea_F_contig102.341.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig102 204617..209690 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927430.3895335-CDS-D-herbacea_F_contig102:204616..2051011622927430.3895335-CDS-D-herbacea_F_contig102:204616..205101Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig102 204617..205101 -
1690790166.1438558-CDS-D-herbacea_F_contig102:204616..2051011690790166.1438558-CDS-D-herbacea_F_contig102:204616..205101Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig102 204617..205101 -
1622927430.4053223-CDS-D-herbacea_F_contig102:205586..2058231622927430.4053223-CDS-D-herbacea_F_contig102:205586..205823Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig102 205587..205823 -
1690790166.1526766-CDS-D-herbacea_F_contig102:205586..2058231690790166.1526766-CDS-D-herbacea_F_contig102:205586..205823Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig102 205587..205823 -
1622927430.4209323-CDS-D-herbacea_F_contig102:209425..2096901622927430.4209323-CDS-D-herbacea_F_contig102:209425..209690Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig102 209426..209690 -
1690790166.161709-CDS-D-herbacea_F_contig102:209425..2096901690790166.161709-CDS-D-herbacea_F_contig102:209425..209690Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig102 209426..209690 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927430.433246-UTR-D-herbacea_F_contig102:209690..2097071622927430.433246-UTR-D-herbacea_F_contig102:209690..209707Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig102 209691..209707 -
1690790166.173607-UTR-D-herbacea_F_contig102:209690..2097071690790166.173607-UTR-D-herbacea_F_contig102:209690..209707Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig102 209691..209707 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig102.341.1

>prot_D-herbacea_F_contig102.341.1 ID=prot_D-herbacea_F_contig102.341.1|Name=mRNA_D-herbacea_F_contig102.341.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=329bp
MRARKNEEHDFIGYEVLHSLLVALGGVFWCVHQGGTYYCVLCCRTAVKIF
ITQQSETRLRVYVPMGSNVLTMQRALVALVAVGTANFAGFTVVEGVLMMS
PITRQQGLVSSARASSGLGMTMLTTRASTSTSTRSLLCGGVDGATRYEEH
LPRARTGGGVLAMRSSSGRRQSGRSDLYNSIPMVKEQREAARKGQEKAAL
ARKEQEAVAAMASSAAVERTSKQVGRGAGAGTGGGATIALVQIKGVSPTT
TVRPKKTSKDINKHGTSAGSGGSAREKRAATKNVSGGAGKQKAGKSRGGD
SSSNSSSSNSSSVAGGSGRSKRRKKRRKR
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mRNA from alignment at D-herbacea_F_contig102:204617..209707-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig102.341.1 ID=mRNA_D-herbacea_F_contig102.341.1|Name=mRNA_D-herbacea_F_contig102.341.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=5091bp|location=Sequence derived from alignment at D-herbacea_F_contig102:204617..209707- (Desmarestia herbacea DmunF female)
CAGGGGTGCCTACGTGCATGCGTGCAAGAAAGAACGAGGAACACGATTTT
ATTGGGTACGAGGTGCTCCACAGCTTATTGGTTGCTTTGGGTGGAGTTTT
CTGGTGTGTGCATCAAGGCGGAACGTACTACTGTGTGCTGTGCTGTCGTA
CTGCTGTCAAGATTTTCATCACACAACAGTCAGAAACTCGCTTACGAGTG
TACGTACCTATGGGATCGAATGTCCTGACGATGCAGCGCGCTCTGGTGGC
TCTCGTGGCAGTGGGAACAGCAAACTTCGCAGGTGAGCTGTTCGCATCAC
TGCTTCACTGCGTGTGTGGTTGCGATGCCCACAGTGGTGGCTCTCTCTTC
ATAGCGGCAGCATCCGATATGTTCATTTTTCTTTCTGGTACTACTACTGT
ATTGTACTACTGTTGTGTACTATATTATGATACTACACTATTACTGCCTG
CTGTACACGTCATTCGAAAAGGTGAAGTTGGTCAACAGTCAACAACATTA
GACTACCTGGTGGTACAACAACAGTAGTACAGTGAGTAGTTCAACAACAA
CAACAGTACGAAGTAGTATTAATAGTAGCATCATAGTTCAAACGTGAAAA
CGTGAAAACGGTTGACCACTGAGACCGGACAACAACTCTGCAATGCTCGT
ACGCAATCGTTTGTTTCAGGTAGATTTTGGGATTAGGCTGCTTTGATGCT
TTCTTTTTTCGGACGACAGCGGCGGATTCAAGGGAGAAAGAGCCCTGCTG
CTATCATAACAGACCATTGATCGTATCGTATCATCCGCGCTGACTTTTAC
CTCCAACAATATGAGGAGGGTAACCTAGGCTAACAAGCGCTTGTATGTAC
GAGTAGGGGAGTCACTGCGTTACAACAGTATACCTTATCTGAGGACCAAT
AGACCCCGCGCGACCGATGTATCACACAGTGAGGTTGCCGATTATCCCCT
GACCCCCGAACCAGTTTGGAACGTCACGGCTGTATGTATTTGTACATCAA
GCAAACATAGCAAGTACAAGTAGTACCAGTAGCGTGATGTGTATGTGATC
GAATCTCTGATTCCGAGGGTATCGTTTCATTCGTCAAGTAGTAATATGAG
GGTATCATACCAGGTACAAGAACAGTAGTATAATATGATAGTAGTAATAC
AGATAGCACCATGATCGATAGATCGATAGTGTACTAACCCTACAGTAGTA
GTGCTACTACTGTTGTCGTTGTGGTACTGTACGGTTAAGATAGTAGTGAG
CAATGAGGTGCTCGAAGTGCCGCACGTCATTGCCTGCGATATACTGTACT
GGTATCAATAAAGACAGGGCGGTGAAGTGAAAAAAAAAAAGACGACACCA
GCAAAGATTCAAACACCGACCAAAAAAATAAAGTGTACCATGTAGTAAAT
AGCGTGTTTGCGCATAAGAAAATTTAAAATTAACTAAGCGTGTTTTCGTC
GGTATTTCTAGTCGAAAAATGAAGTTTCTCCATCGTGCGCACAAGAAATT
TGGAATTTGCTTGAAATTAGCTAATATTATGGATCTTGAGCAAAGAGCCA
TCATTTGATATACTGCGAACAGTTTGTGAAGCCTCTCGGGGCACAGGAGG
CAGGAGGATCGTGTTCTCTCGAGGTACAGTAGGTATAAGCTGCACATCAG
CGACGATTGAACATCAGCAAACGTCTCTCACACGCCTCAAATTAGTGCAA
CGCTCTTCGGCAAGGCCGCAATCACGGCTGGCTGCGACAAGCTCTACTCG
TGGGTCGTGTCTTCCTTGTTGGTTGTCTTCGTTGCCCGTGGCTAAACAAA
TGCTTGACAACAACCAACAACAACAACCACGAGCATCATCCGCGCTTGAG
GCTGAAACACAGCTGCACAGCCGCTACTACTACAATACTACTACTATGCT
ACTTGTCAGCGCTGTAGCATAACAACAGTAGTACAGCAGTAGTGTGTCCG
TGGTGAAACCGTGCTGCTCATAGCCGCCCGGCGCCCGATGCCTGCGATGA
TATGTCTATACGCGTAGATGGTCGCAGCGCTGCGACTATCATAGCACACA
CAACAACAGCAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAGTACAGCAGTAGTATCATAGTAGTAGCTA
CTGTAGTGGTGGCTATACTTGGGTTGCTTGGTGTAAGCACGGCACAGACG
CTGCAGCAGCGGCGAAAAAAGAACCACGGATTTGCCGGGGAAGGCAGGGT
AGTGCAGTTCGTTGTTGTTGTTGTTGCTGCTGCTGCTGGCGGCTCAACGC
TCAACGCGCGCATCGTACATCTCTCGTGTTTGTTGTTGTTGCGGTTGCAT
TCGACCAATCGGGAGAGTTGGCCAACCAGGGCACGTGGTCGTTGCGGCCG
ATGGCTCTATGCAAAACGTTTGGCTCTAGTACAACTTGCCTTCCAAATTT
TACTCACATAGGCAAATTAGTACCAAAGGCTGTGGCATTTTTGCTTAGCG
GTTGGTAACTTATTCCCCCGAAGCGGTCGTTGTTTTGTATATTTTCTTAT
GCGCAAACACGTTAAAAAATATATATTTTTTATTATATTTAATTTTTTTC
CGTCCAATTTATTGTCTTCGTCCTATTCTTTCTCTAGCTCCATCTCTCTT
CTTAACTCAGATCCGGGGTCACATAGTAGGCGCTCCTCCCGCCTTCCCAC
TACGGTACGTGCCCGCATTTTTATCGCGAGAAGAGTGCAGCAATTTATTC
CCTCGTCGACTTTCATCGAATTGTGCTTACTCACGCTCTCGCGTTTTCCG
CGACGGAAGATGGCACAGAAAAGTACCACTGGGAATTGAACCCCCAACTT
CCGCCAACAGAGGCTACACCCTAACCACTAGACGATCGCGTCACCCTGTC
TCTAGTTATATGTGAAGTAAATTAGCAGTGGGCGAAGAGGTGCTTGACGT
GCGGCCCGCCTCATTACCTGCAGTAGGCCATGTACATTGCAAGGTTGTTG
ACGAAGGAAATAAAGACAAGGACCATGTCGCTTCAAAAAAAAAAGACACC
CAGCAAGGTTCGAACTCAGACCGAAAAAGAGAAAGAGTATTCGAGTACGA
GTATACGACTGGAAATATTCGTGAAGTTTTGATACCTGGTATTGAATGGA
TGTTGACTGCACCATACTCGTATCTCAACGTATAATCGAGCTACTCAGAG
CTTGTTTTTTTGTCCTTGTTTTATTGTTTTAGTCCATGAAGCAAGCAAGG
ATGCAGTCGTTGATATCGCGAGACAGAAGCTACGAAAGGAGCTGAAACTT
GGCCGCGCCCGAATATGGGTAAACCACGTTTAGATTCTGTTGCTGTGGTG
GCTTGTGCGTTGCGAAAAGAAGAGACGCGTTGTCTGTTGCGTCGTGAGTA
CTTACTCTTGTTGTGGTACGCAGTTTCTCTTTACGTGCCATGAGTGCATA
CAGACTCACCAACGGCCCTTTCTCGAAAGCAAAAATCGCCGTCGTCAGTG
ACACCTCGAGATAAGAGGCGACGAAAGGACCTGAGAGTTGGCCACGGATA
AAATGGATGTGCCAGCTTTCAGAGGTCGTCATTGTTGTAGCGGCTTGTGC
TTGGTTCGACGAAACGCTACATCATGGCGTCGAGTTGATGTACACGTGAT
CTCAGCGAGGAGGAGAGTGTTTTTACAGTGCAACAAAAGGATAGCGCAGT
AGTAACCTGAACAATGGAAATCGTTGTCGTCTTGACGCTGACCTAACCCA
ACAGAACCGAGCCCCCAACCAAACCAAACCGAGAATGAACAAAATAAATC
GTTGTCGTCTGGATGCTGAGCCAACCTTACCCGACCCAACCCGACCCAAC
CCAACCCTTGGCTGGCTGACACTCTCATTGACAGGCTTCACCGTCGTCGA
AGGTGTGCTCATGATGAGCCCCATTACCAGACAACAAGGACTAGTTTCGT
CCGCGCGAGCCAGCAGCGGGCTGGGTATGACGATGTTGACGACACGGGCA
TCGACGTCGACATCGACAAGGTCGCTTCTTTGCGGTGGCGTCGACGGAGC
CACGAGATATGAGGAGCATCTTCCTAGGGCGCGGACAGGGGGAGGAGTCT
TGGCGATGAGGTCGTCTTCGGGTGGGTGGAGGCGTTTTTTGTTGTGTGTG
CGAACCGTCATCGTTATTATACATGTGATGCATGATGCCTGTCTCGCGTG
ATTGTGCGAGATGCCTGCCTTTCTTTGGTGCGGGCGAATGGATATATATA
TATATATATATATATATATATATTTTTTTTTTTAATCGTTTTTACATTAC
AGTAGAACTTATCATAGAGCCGCTCCTTTTTTTCATGAATTGACTGCTGT
GTTGTGTTGGGCTATGCTGCGCTGTAGCAGCATAAAGGCATTTTGTCATT
CATTAATTACTAGCAAAAAAAATGTAATCACCAACTCTTAAAAAAGCAAA
ACAGTAAGCGAAGCAATCGTTTATTTATTGTCTCTGCTTGTACTTACCTT
TAGCTCTTATGTGCGATCTCCGGGGCCTTTTCTCTTGTTGTTGTGCGCGC
GGGACGGGGCCACGGGGGCTGGGGGGTGGGGTTGGGTAATACCGTCTCCC
ACAAAGGACGGCGACAATCCGGACGCAGTGACCTGTACAACTCCATTCCC
ATGGTAAAGGAGCAACGAGAGGCCGCCCGCAAAGGACAGGAGAAGGCAGC
CCTGGCGAGGAAGGAGCAAGAAGCCGTTGCCGCAATGGCTAGCAGTGCCG
CCGTCGAGCGAACCTCAAAGCAGGTAGGAAGAGGAGCCGGCGCTGGGACG
GGCGGGGGCGCCACGATCGCCTTGGTGCAGATCAAGGGCGTCTCCCCGAC
GACGACAGTGAGGCCAAAAAAAACGAGCAAGGATATAAACAAACACGGGA
CGTCAGCTGGTAGTGGTGGTAGTGCAAGGGAGAAGAGAGCGGCGACAAAA
AACGTGAGCGGCGGTGCGGGGAAGCAAAAGGCAGGGAAGAGCCGCGGCGG
GGACAGCAGTAGTAATAGTAGTAGTAGCAATAGTAGTAGTGTCGCTGGTG
GAAGTGGTCGATCGAAGAGGCGAAAGAAGCGGCGGAAGCGA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig102:204617..209707-

>mRNA_D-herbacea_F_contig102.341.1 ID=mRNA_D-herbacea_F_contig102.341.1|Name=mRNA_D-herbacea_F_contig102.341.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1974bp|location=Sequence derived from alignment at D-herbacea_F_contig102:204617..209707- (Desmarestia herbacea DmunF female)
ATGCGTGCAAGAAAGAACGAGGAACACGATTTTATTGGGTACGAGGTGCT
CCACAGCTTATTGGTTGCTTTGGGTGGAGTTTTCTGGTGTGTGCATCAAG
GCGGAACGTACTACTGTGTGCTGTGCTGTCGTACTGCTGTCAAGATTTTC
ATCACACAACAGTCAGAAACTCGCTTACGAGTGTACGTACCTATGGGATC
GAATGTCCTGACGATGCAGCGCGCTCTGGTGGCTCTCGTGGCAGTGGGAA
CAGCAAACTTCGCAGATGCGTGCAAGAAAGAACGAGGAACACGATTTTAT
TGGGTACGAGGTGCTCCACAGCTTATTGGTTGCTTTGGGTGGAGTTTTCT
GGTGTGTGCATCAAGGCGGAACGTACTACTGTGTGCTGTGCTGTCGTACT
GCTGTCAAGATTTTCATCACACAACAGTCAGAAACTCGCTTACGAGTGTA
CGTACCTATGGGATCGAATGTCCTGACGATGCAGCGCGCTCTGGTGGCTC
TCGTGGCAGTGGGAACAGCAAACTTCGCAGGCTTCACCGTCGTCGAAGGT
GTGCTCATGATGAGCCCCATTACCAGACAACAAGGACTAGTTTCGTCCGC
GCGAGCCAGCAGCGGGCTGGGTATGACGATGTTGACGACACGGGCATCGA
CGTCGACATCGACAAGGTCGCTTCTTTGCGGTGGCGTCGACGGAGCCACG
AGATATGAGGAGCATCTTCCTAGGGCGCGGACAGGGGGAGGAGTCTTGGC
GATGAGGTCGTCTTCGGGCTTCACCGTCGTCGAAGGTGTGCTCATGATGA
GCCCCATTACCAGACAACAAGGACTAGTTTCGTCCGCGCGAGCCAGCAGC
GGGCTGGGTATGACGATGTTGACGACACGGGCATCGACGTCGACATCGAC
AAGGTCGCTTCTTTGCGGTGGCGTCGACGGAGCCACGAGATATGAGGAGC
ATCTTCCTAGGGCGCGGACAGGGGGAGGAGTCTTGGCGATGAGGTCGTCT
TCGGGACGGCGACAATCCGGACGCAGTGACCTGTACAACTCCATTCCCAT
GGTAAAGGAGCAACGAGAGGCCGCCCGCAAAGGACAGGAGAAGGCAGCCC
TGGCGAGGAAGGAGCAAGAAGCCGTTGCCGCAATGGCTAGCAGTGCCGCC
GTCGAGCGAACCTCAAAGCAGGTAGGAAGAGGAGCCGGCGCTGGGACGGG
CGGGGGCGCCACGATCGCCTTGGTGCAGATCAAGGGCGTCTCCCCGACGA
CGACAGTGAGGCCAAAAAAAACGAGCAAGGATATAAACAAACACGGGACG
TCAGCTGGTAGTGGTGGTAGTGCAAGGGAGAAGAGAGCGGCGACAAAAAA
CGTGAGCGGCGGTGCGGGGAAGCAAAAGGCAGGGAAGAGCCGCGGCGGGG
ACAGCAGTAGTAATAGTAGTAGTAGCAATAGTAGTAGTGTCGCTGGTGGA
AGTGGTCGATCGAAGAGGCGAAAGAAGCGGCGGAAGCGAGACGGCGACAA
TCCGGACGCAGTGACCTGTACAACTCCATTCCCATGGTAAAGGAGCAACG
AGAGGCCGCCCGCAAAGGACAGGAGAAGGCAGCCCTGGCGAGGAAGGAGC
AAGAAGCCGTTGCCGCAATGGCTAGCAGTGCCGCCGTCGAGCGAACCTCA
AAGCAGGTAGGAAGAGGAGCCGGCGCTGGGACGGGCGGGGGCGCCACGAT
CGCCTTGGTGCAGATCAAGGGCGTCTCCCCGACGACGACAGTGAGGCCAA
AAAAAACGAGCAAGGATATAAACAAACACGGGACGTCAGCTGGTAGTGGT
GGTAGTGCAAGGGAGAAGAGAGCGGCGACAAAAAACGTGAGCGGCGGTGC
GGGGAAGCAAAAGGCAGGGAAGAGCCGCGGCGGGGACAGCAGTAGTAATA
GTAGTAGTAGCAATAGTAGTAGTGTCGCTGGTGGAAGTGGTCGATCGAAG
AGGCGAAAGAAGCGGCGGAAGCGA
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