mRNA_D-herbacea_M_contig96.16047.1 (mRNA) Desmarestia herbacea DmunM male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_M_contig96.16047.1
Unique NamemRNA_D-herbacea_M_contig96.16047.1
TypemRNA
OrganismDesmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig96.16047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_M_contig96contigD-herbacea_M_contig96:353448..353750 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunM male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size275
Cds size273
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935780.2342257-CDS-D-herbacea_M_contig96:353447..3536341622935780.2342257-CDS-D-herbacea_M_contig96:353447..353634Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig96 353448..353634 -
1690880701.185616-CDS-D-herbacea_M_contig96:353447..3536341690880701.185616-CDS-D-herbacea_M_contig96:353447..353634Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig96 353448..353634 -
1622935780.249505-CDS-D-herbacea_M_contig96:353664..3537501622935780.249505-CDS-D-herbacea_M_contig96:353664..353750Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig96 353665..353750 -
1690880701.1958106-CDS-D-herbacea_M_contig96:353664..3537501690880701.1958106-CDS-D-herbacea_M_contig96:353664..353750Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig96 353665..353750 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_M_contig96.16047.1prot_D-herbacea_M_contig96.16047.1Desmarestia herbacea DmunM malepolypeptideD-herbacea_M_contig96 353448..353750 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_M_contig96.16047.1

>prot_D-herbacea_M_contig96.16047.1 ID=prot_D-herbacea_M_contig96.16047.1|Name=mRNA_D-herbacea_M_contig96.16047.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=91bp
YSYNRFFGFLPGLCTGLGPAHGTGQDGMRACIPSRPVVPLQNGTASRPVS
YEHLKVPFQRDFSRDIPYKIPRDNPVISRENPTGFLTGLC*
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mRNA from alignment at D-herbacea_M_contig96:353448..353750-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_M_contig96.16047.1 ID=mRNA_D-herbacea_M_contig96.16047.1|Name=mRNA_D-herbacea_M_contig96.16047.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=303bp|location=Sequence derived from alignment at D-herbacea_M_contig96:353448..353750- (Desmarestia herbacea DmunM male)
TACTCCTATAATAGGTTTTTCGGTTTTCTTCCAGGGCTTTGTACGGGACT
GGGACCTGCCCACGGGACGGGACAGGACGGGATGAGGCCCCGTCCCGTCC
CGCACGACATTTTGAGGGCATGTATCCCGTCTCGTCCTGTAGTGCCCCTT
CAGAACGGGACCGCGTCCCGTCCTGTTTCGTACGAACACTTGAAAGTCCC
GTTCCAACGGGACTTCTCACGAGACATCCCGTACAAGATCCCGCGGGATA
ATCCCGTGATCTCACGGGAAAATCCCACAGGATTTCTTACGGGACTGTGC
TAG
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Coding sequence (CDS) from alignment at D-herbacea_M_contig96:353448..353750-

>mRNA_D-herbacea_M_contig96.16047.1 ID=mRNA_D-herbacea_M_contig96.16047.1|Name=mRNA_D-herbacea_M_contig96.16047.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=546bp|location=Sequence derived from alignment at D-herbacea_M_contig96:353448..353750- (Desmarestia herbacea DmunM male)
TACTCCTATAATAGGTTTTTCGGTTTTCTTCCAGGGCTTTGTACGGGACT
GGGACCTGCCCACGGGACGGGACAGGACGGGATGAGTACTCCTATAATAG
GTTTTTCGGTTTTCTTCCAGGGCTTTGTACGGGACTGGGACCTGCCCACG
GGACGGGACAGGACGGGATGAGGGCATGTATCCCGTCTCGTCCTGTAGTG
CCCCTTCAGAACGGGACCGCGTCCCGTCCTGTTTCGTACGAACACTTGAA
AGTCCCGTTCCAACGGGACTTCTCACGAGACATCCCGTACAAGATCCCGC
GGGATAATCCCGTGATCTCACGGGAAAATCCCACAGGATTTCTTACGGGA
CTGTGCTAGGGCATGTATCCCGTCTCGTCCTGTAGTGCCCCTTCAGAACG
GGACCGCGTCCCGTCCTGTTTCGTACGAACACTTGAAAGTCCCGTTCCAA
CGGGACTTCTCACGAGACATCCCGTACAAGATCCCGCGGGATAATCCCGT
GATCTCACGGGAAAATCCCACAGGATTTCTTACGGGACTGTGCTAG
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