mRNA_D-herbacea_M_contig94.15970.1 (mRNA) Desmarestia herbacea DmunM male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_M_contig94.15970.1
Unique NamemRNA_D-herbacea_M_contig94.15970.1
TypemRNA
OrganismDesmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig94.15970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_M_contig94contigD-herbacea_M_contig94:874943..876060 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunM male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size288
Cds size204
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_M_contig94.15970.1prot_D-herbacea_M_contig94.15970.1Desmarestia herbacea DmunM malepolypeptideD-herbacea_M_contig94 875025..876060 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935756.0550728-UTR-D-herbacea_M_contig94:874942..8750241622935756.0550728-UTR-D-herbacea_M_contig94:874942..875024Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig94 874943..875024 -
1690880690.637323-UTR-D-herbacea_M_contig94:874942..8750241690880690.637323-UTR-D-herbacea_M_contig94:874942..875024Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig94 874943..875024 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935756.0791528-CDS-D-herbacea_M_contig94:875024..8751011622935756.0791528-CDS-D-herbacea_M_contig94:875024..875101Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig94 875025..875101 -
1690880690.650662-CDS-D-herbacea_M_contig94:875024..8751011690880690.650662-CDS-D-herbacea_M_contig94:875024..875101Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig94 875025..875101 -
1622935756.0953116-CDS-D-herbacea_M_contig94:875933..8760601622935756.0953116-CDS-D-herbacea_M_contig94:875933..876060Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig94 875934..876060 -
1690880690.665794-CDS-D-herbacea_M_contig94:875933..8760601690880690.665794-CDS-D-herbacea_M_contig94:875933..876060Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig94 875934..876060 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_M_contig94.15970.1

>prot_D-herbacea_M_contig94.15970.1 ID=prot_D-herbacea_M_contig94.15970.1|Name=mRNA_D-herbacea_M_contig94.15970.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=68bp
HHQREHRSRRSKGAAFGILPHPLRQKEAGNAAPLSAAQPRYHGQFVSCVR
VHIPCRDADKIETKWTM*
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mRNA from alignment at D-herbacea_M_contig94:874943..876060-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_M_contig94.15970.1 ID=mRNA_D-herbacea_M_contig94.15970.1|Name=mRNA_D-herbacea_M_contig94.15970.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=1118bp|location=Sequence derived from alignment at D-herbacea_M_contig94:874943..876060- (Desmarestia herbacea DmunM male)
CATCACCAACGCGAGCACAGATCACGACGGAGTAAAGGGGCTGCCTTCGG
TATTTTGCCACATCCGTTGAGACAGAAGGAGGCCGGCAACGCTGCACCAC
TCTCTGCCGCACAACCTCGATATCACGGTGGGTCTACGTTCCGTTCTTGA
GCTTTTCCGTCTGCCCGTTGGTTTTTGGTCGTCGCCCGGCATGCTTTCGT
GTGCCTCATCCGTTGTGGGGTGCGACGTATGCAGCCCATCGGCATAGATA
GGTCGTGCAGCCCTGAAATCGCTAGGTCTCATTGTGTGGCGATCTAATCG
CGTACCATCAGCAGTAGATGAGTGATTCACTCGCGGGATAGATGGAGACG
GATATGGATGTGTGCGACACAGCTGAATTGGATGTTCGCATAGTACCATG
TGTGGTGTACCATATATCTTATCGTGAACAGAGTGACTTTTGGTTGCATT
GCGCATTGGTGATTTACCATGCTCGTTGAGTAGCGCACTGGCAATTCGAT
TCACGGCCCTCAATGTTCGTGGCGCAAGACTGCACTTAGTATATTAGTAT
ATTACTGAAGCATGTTCTAGGCACGCCTTGGAGGTAGTATTCAGCACAGC
AATCAACATCTGGGACTGCAACCAAACAAGACTCATGTGCCGGATTTAAA
ATGTGCGAAAAGCATATGTAGCTGCATGTCTTATCTGAAGGCCTGTTGTT
TGTGTGTCATGTTATGTCATGAAGCAAACGCTCGTTTGTGCTACGAGTAT
ACGTGTAGACTAAGTATGCATGGCAGCGTGTGCCACATGCCCTATATGCC
AGCCAGGTATGAGATGATGAGATGGTCAGCGCTTGTGATGTATTCATCAC
TCTATCCCCCCTCCGTGAGGTTTGTCGGCACTGTTTTTGATTGGCTGCGT
TTCCCTTTCTCGTTTCTTGTCTTCGCTGCTCTCATTTGGTATTTGGTACG
CCGGCCCAGGACAATTTGTTTCTTGCGTCCGAGTTCATATTCCGTGTCGG
GACGCCGACAAAATCGAAACGAAATGGACAATGTAGACGTGGACCTGGAA
GGTAAGGGAGAGCAACTCCTCAACCTCGCTCGTAACCACGCGACGCCGGA
GCAGTGGGCAGCATGGCT
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Coding sequence (CDS) from alignment at D-herbacea_M_contig94:874943..876060-

>mRNA_D-herbacea_M_contig94.15970.1 ID=mRNA_D-herbacea_M_contig94.15970.1|Name=mRNA_D-herbacea_M_contig94.15970.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=408bp|location=Sequence derived from alignment at D-herbacea_M_contig94:874943..876060- (Desmarestia herbacea DmunM male)
CATCACCAACGCGAGCACAGATCACGACGGAGTAAAGGGGCTGCCTTCGG
TATTTTGCCACATCCGTTGAGACAGAAGGAGGCCGGCAACGCTGCACCAC
TCTCTGCCGCACAACCTCGATATCACGCATCACCAACGCGAGCACAGATC
ACGACGGAGTAAAGGGGCTGCCTTCGGTATTTTGCCACATCCGTTGAGAC
AGAAGGAGGCCGGCAACGCTGCACCACTCTCTGCCGCACAACCTCGATAT
CACGGACAATTTGTTTCTTGCGTCCGAGTTCATATTCCGTGTCGGGACGC
CGACAAAATCGAAACGAAATGGACAATGTAGGACAATTTGTTTCTTGCGT
CCGAGTTCATATTCCGTGTCGGGACGCCGACAAAATCGAAACGAAATGGA
CAATGTAG
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