mRNA_D-herbacea_M_contig93.15923.1 (mRNA) Desmarestia herbacea DmunM male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_M_contig93.15923.1
Unique NamemRNA_D-herbacea_M_contig93.15923.1
TypemRNA
OrganismDesmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Homology
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BLAST of mRNA_D-herbacea_M_contig93.15923.1 vs. uniprot
Match: D8LMD8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMD8_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 1.220e-46
Identity = 79/134 (58.96%), Postives = 103/134 (76.87%), Query Frame = 1 
Query:    4 QAVRRTLAVAIDGFCFNAPLLHYAYDALERWMPTDENVSNAFLQVAIDVLVLDPAYALLFIVTTGLLEGLAMEGDIIPMLKADYATLALSLMAMGLVLAPPQIYLFKRFALKWRVLIADIIDLLWTFLACLVMG 405
             AVR++LAVAIDGFC +APLLH AY AL+RW+P +E+ + A  QV +DVLVLDP + LLF+VTTGLLEG +   +II  ++ DY TL   L+ +GL LAP Q+Y F RF +KWRVLI+D +D+LWTF+AC V+G
Sbjct:  132 NAVRQSLAVAIDGFCVSAPLLHLAYGALDRWLPAEESKAYALAQVLVDVLVLDPIFGLLFMVTTGLLEGRSFSQEIIRTIEDDYVTLVFWLVVIGLALAPLQVYTFNRFPVKWRVLISDGMDVLWTFVACFVIG 265
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BLAST of mRNA_D-herbacea_M_contig93.15923.1 vs. uniprot
Match: D8LMD9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMD9_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 9.550e-34
Identity = 63/129 (48.84%), Postives = 91/129 (70.54%), Query Frame = 1 
Query:   10 VRRTLAVAIDGFCFNAPLLHYAYDALERWMPTDENVSNAFLQVAIDVLVLDPAYALLFIVTTGLLEGLAMEGDIIPMLKADYATLALSLMAMGLVLAPPQIYLFKRFALKWRVLIADIIDLLWTFLACL 396
            V R+ AV IDG   N PLLHYAY+ LE  MP  +++  A  QV +DVLV+DP +A +F+ +TGL+EG ++ G+I+P +   Y TL L L+ +G+  AP QIYLF R+ +++RVL AD+IDL+WT ++ L
Sbjct:   53 VWRSCAVMIDGLLINGPLLHYAYEMLESRMPAGDSILAAMTQVCVDVLVIDPVFAFMFVWSTGLIEGRSVRGEILPTIVHHYPTLVLWLIVIGVGWAPIQIYLFNRYPVQYRVLTADLIDLVWTCVSSL 181
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BLAST of mRNA_D-herbacea_M_contig93.15923.1 vs. uniprot
Match: A0A6H5L428_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L428_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 7.600e-10
Identity = 33/71 (46.48%), Postives = 51/71 (71.83%), Query Frame = 1 
Query:  127 FLQVAIDVLVLDPAYALLFIVTTGLLEGLAMEGDIIPMLKADYATLALSLMAMGLVLAPPQIYLFKRFALK 339
            F Q+ +DVLV+DP +A +FI  TGL+EG +++G+I+P +   Y TL L L+ +G+  AP QIYLF R+ ++
Sbjct:  648 FGQIGVDVLVIDPVFAFMFIWYTGLIEGRSVQGEILPTIVHHYPTLVLWLVVIGVGWAPVQIYLFNRYPVQ 718
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BLAST of mRNA_D-herbacea_M_contig93.15923.1 vs. uniprot
Match: A0A2V3J3C5_9FLOR (Protein Mpv17 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3C5_9FLOR)

HSP 1 Score: 60.1 bits (144), Expect = 2.850e-8
Identity = 42/131 (32.06%), Postives = 72/131 (54.96%), Query Frame = 1 
Query:   10 VRRTLAVAIDGFCFNAPLLHYAYDALERWMPTDENVSNAFLQVAIDVLVLDPAYALLFIVTTGLLEGLAMEGDIIPMLKADYATLALSLMAMGLVLAPP-QIYLFKRFALKWRVLIADIIDLLWTFLACLV 399
            V+RT+A ++    F+APLLH  Y+  ER++P   N+ N   Q+ +D +V  P +  +F+V   +LEG     +I   L+  Y    +  + + L+L P  Q   F     K+RVL+ +I+DL++T +  L+
Sbjct:   81 VQRTIAFSVAEIVFSAPLLHVLYELYERYIPA-VNLRNLLSQLVLDGVVAMPVWLFVFLVLVSILEGRWTLVEIWETLRTKY----IPSLIVTLILTPVVQSVNFTVVPPKYRVLVVNIVDLVYTTILSLL 206
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig93.15923.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LMD8_ECTSI1.220e-4658.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LMD9_ECTSI9.550e-3448.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L428_9PHAE7.600e-1046.48Reverse transcriptase domain-containing protein n=... [more]
A0A2V3J3C5_9FLOR2.850e-832.06Protein Mpv17 n=1 Tax=Gracilariopsis chorda TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_M_contig93contigD-herbacea_M_contig93:1119948..1125557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunM male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.9
Seed ortholog evalue1.4e-26
Seed eggNOG ortholog2880.D8LMD9
KEGG koko:K13348
KEGG Pathwayko04146,map04146
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
EggNOG free text desc.Belongs to the peroxisomal membrane protein PXMP2 4 family
EggNOG OGsKOG1944@1,KOG1944@2759
Ec32 ortholog descriptionMpv17/PMP22
Ec32 orthologEc-16_001600.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons2
Model size414
Cds size414
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935754.3573794-CDS-D-herbacea_M_contig93:1119947..11200391622935754.3573794-CDS-D-herbacea_M_contig93:1119947..1120039Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig93 1119948..1120039 +
1690880689.84209-CDS-D-herbacea_M_contig93:1119947..11200391690880689.84209-CDS-D-herbacea_M_contig93:1119947..1120039Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig93 1119948..1120039 +
1622935754.3740952-CDS-D-herbacea_M_contig93:1125235..11255571622935754.3740952-CDS-D-herbacea_M_contig93:1125235..1125557Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig93 1125236..1125557 +
1690880689.8596196-CDS-D-herbacea_M_contig93:1125235..11255571690880689.8596196-CDS-D-herbacea_M_contig93:1125235..1125557Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig93 1125236..1125557 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_M_contig93.15923.1prot_D-herbacea_M_contig93.15923.1Desmarestia herbacea DmunM malepolypeptideD-herbacea_M_contig93 1119948..1125557 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_M_contig93.15923.1

>prot_D-herbacea_M_contig93.15923.1 ID=prot_D-herbacea_M_contig93.15923.1|Name=mRNA_D-herbacea_M_contig93.15923.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=138bp
LQAVRRTLAVAIDGFCFNAPLLHYAYDALERWMPTDENVSNAFLQVAIDV
LVLDPAYALLFIVTTGLLEGLAMEGDIIPMLKADYATLALSLMAMGLVLA
PPQIYLFKRFALKWRVLIADIIDLLWTFLACLVMGSN*
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mRNA from alignment at D-herbacea_M_contig93:1119948..1125557+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_M_contig93.15923.1 ID=mRNA_D-herbacea_M_contig93.15923.1|Name=mRNA_D-herbacea_M_contig93.15923.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=5610bp|location=Sequence derived from alignment at D-herbacea_M_contig93:1119948..1125557+ (Desmarestia herbacea DmunM male)
CTGCAGGCGGTGCGGCGGACCCTGGCTGTTGCAATCGACGGCTTCTGCTT
CAACGCACCGCTCCTTCACTACGCATACGACGCATTGGAAAGGTGGGGTC
ATAGTATGCAACGGAATACACGTACTACATGATCTATCTGTGCGAGAAGG
GCTGTGGGTCTAGAGGCGATATCCGCGTTGAGTTACACCATAACCACCGA
GCTATTTAGTCAGCGCTGACTGACTGAACAAGCCCACCTCACTTAATGGT
TATGTGCACGATCTCTAACTACATCTATCCAGCTAGACCGCGCCAGATTG
TGCTTGTTTTTTTGTTAGATTAACACCATAATTTGACGAGTTATTAAGTT
AGTGCTGGCTGAAGAGCTAAGCGATTAGCTCTATCTGTATCACTAGTAGG
GTAGTAGGGACTAATGCTAGAAACGTATATATATATATATATCTCCCGAC
AAATAGGACGAACCGAGCCGACACCACCCAGACACATTTAAGTCCCCTCC
GGAGGCATGCCGCGGTAGGGGGTGCTTTTGGGCCCAAAACGTTCTGACTG
ATGGGGTTCCTCGACTAAAGGACTACAGTACCCAATACCTTTGAAATTCC
ATGCGTTTCGCAAAATTTTGTGGGATATATATACGTAGCCGATGGGAATG
GTTTTCGGGGTACGAGTGAGTACATTTTTTTTCATAGTTGTTTTTGACTG
CGATATGGAGTTCCTCAAGTGAGGAGCCTCAGAAAATTTGGGTACCCCGC
CTACCGTGGCATGCCTCCTTGGTTGATGAAAACCTGATGTGCTCCGTCCC
GGTGTAAGGTTAAGGAGGTGGGGAGATAGGTGGAGAAGAACACCGATTCC
ATCTTGTCCCAGCTGCGAGCAGAAATGAGGCAACACACGACAGCAGTAAT
ACAGCTCAACGAAGTCAAGGCGCCACAGTAATTTCCCCGCAAACCTCCGC
GTATGAGTGCTGTTTTCGAGGGTGTTGTTTTTTTAGGCGTAATAACCTGT
GCGCATGTAGGTCGACAAGTCGACACTGACCACAACATCCTGTGTAGTGA
GTGAGGGCGATGAAGGACGGCCCTCCTAATCGAAGTATATCTCTTACTCC
GAAGTATCACGAGGGCCCCTACTAAATAGACCCAAAACACTTATATTGAC
TTGTGTACCGCGGGACAAACGCGGCGTGAATTGCGAATCTTGTTCGCTTC
TATCATGCGGTGTGGCAGTAGACTTACCAACCATGCTACATTTTCATTGT
TGTTAGGGGGAGGGGGCGGGGGGGGGGGACAAGGATACTTGCGCTCACCT
TTGTTCATCTTATTTTGGGGGTATTTATTACGAGCCTCTGTAATATATGT
TTGTGGACAAAATTCGATCGTGAGCCGGGGTTGACCATCGCATACATATT
ATTAGTAGTTGGTCCTCGTGAAGGTCGTGGGTTCGAATCGTGCTGTACGC
GAAAAAAGCGGGAGATATACACACACATATATATATATATATATACTGTA
TACTATATCATCAAAATATTGGCCATTTTGGGGCGTTTTTTGTTCGTCTT
TTTGGTCAATTATCCGACTTTTCGGGACGACGATTTTGCGAATAACCTCC
CCCCACAAGACGATGTTTcTTTTTTGACGCCCCAAATTGTTACCCCAAAG
GGGGGGGGGGGGGGGGGGGGGGGGGTACTCATTTCATGCATGGCCGCAGC
CTAGCAAGGGGGTGAAAAAGAAGAAAAAAACGGACGTTGCAGAAGTATCG
CTCTCTCGCATACGATGACTCTTCAATTCGCAATGTCATTATTCCGTGCA
GTGGGTTTTAGTTTTTCCTTAGCTCTACGGGTGGGGGTGTCAATAAGGCA
AAACTAATGCGCTTATAAAATACCAGATTTGTTGCCTTAAGCCCCTAAAA
GCAGTGTTCATGGGGGTGGGTTCGGTCAGAATAATACCAAGCTATGCGTC
CGTCCCCGATCGCCCATGATTCAATCCGGGCGGGGGGGGTTGATTATTAG
ATTCCCAATGGGGTCAGTCCTTGCAGCAAGTGTTCTTCAACAATACGTGT
GAGAGTGTCAAGACCGAACATATTGCGCTATGTCAGCTTTCTTCCCTTCA
GCGCTTCCTGGAAGCAGTCTATTCATGGGGTGCGGCCAAAATAATAACAG
GTAATGACGCGTCCCTGTTCCCCCAGGGGGTATGACTCTTAGACTGCCAA
AGGGATCGTTCCGTGTAACAGGCGTTCTTTAACTCTATGGGTGAGAATAT
TATGACCAAACGAATTTCGCTATATATACCAACTTTCTTCCCTTATACGC
CCGGATTGGGAAACCAGTATTGGTGGGGGATCGGTCAGCATAATAACAGA
TCACCATGCGTTATTCCTGTTCCTCTGTGAGTCAAGAATATACAGATACA
CCGCGGGTAGGTCCGACATCATCGGTCTTGGAGATAGATAGTAGATAGAT
GTAGTCGTCGTCCAAACAGGCAACACGTAACTAAGCCCCGCCCCTTCGGT
AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTGGTATAGTGTGATACAT
GCGCAATAATAATAGCTATCGCCCCCAAAATTATTACAACAACAAAAAAG
TTAGACTACTGTGTCGCCGTGCCCGCCGGAGCCGAAGACAGTTTAACAAT
AATTATACCGAAAATAGAAAATAAGAAAGAGTCGTGCTACGGTAGGGTGC
CCCCCCCTCATTTCACTTCCGGGGGGAAGTCACTCAAAGTAGAAAATTTA
AACATTTTTTTCGCGCAGCGCACTAAACAATCAAATAGCGGTTCACATCA
TCACGAAATAAAATTGCGTAGAGCTTGATAACCGCAAAGATATAGGGTAA
TCACTCGACCGAGTGACCCTGAGCCGCTGAAATCCAGGTCTAAAATATGC
CCCCCCCATACCGTAGCACGACTCGAAAATGGCATTGAGTTATGAGTGAG
TGCGCACTTGAATTTTTGCAATAAATTACGCTCGTACAGTACCACTCTTT
CCTACTGATCAAAATAAAAAATGACAAGTAAGCCCCGTTTTTTTATCTCC
AACGCTAAATTCTATATTATTATATGTATTCCCATCTTTTTTTATTTTTG
CTTTCTTTCTTTCTTTTTTCTTCTTTTTTATATATTTTATTGCGATTTGT
TTGATATGTTAGCCTGTGTCCACGGAATTTCGTGTCTTTCTAGGGTGGAA
GATCCAGTACAGACTCTGAGTACGCTAGTGGATGTCGTAGAGTGGAATGG
ACGACTTTTAATGTGGAGACAACAACAACAACAACAACATGGCATGAGGT
GGCCCAGTGGTCTAGTGGTTAGGGTGTTCGCCTCTCAGAGTCTGTTGGCG
GAAGTTGGGGGTTCGATCTCCGGTGGCACTTGTCTGTGCCATGTTCCGTC
GCGGAAAACGCGAGAGCGTGAGTAAGTACAATTCGATGAAAGTCGACGAG
GGAAGAAAGTGCTGCACTCTTCTCGCGACAAAAATGTAGGCACGTACCGT
AGTGGGAAGGCGGGAGGAGCGCCTGCTATGTGTCCGCGGATCTGAGTTAC
GAAGAGAGATAGAGCTAGAGAAAGAATAGGGCAAAGATAATAAATGGGAC
GGAAGAAAAAAAAAAATGGGTGGCGCAATGGTCTAGTGGATACTCTGTTC
TCTGTTGGCGGAAGTTGGGGGTTCGATTCCCGGTGGCACTTATCTGTGCC
ATCTTCCGTCGCGGAAAACGCGAGAAGAGCGTGAGTAAGCACAATTCGAT
GAAAGTCGACGAGGGAAGAAAGTGCTGCACTCTTCTAGCGATAAAAATGT
AGGCATGTACCGTAGTGGGAAGGCGGGAGGAGCGCCTACTATGTAACCCC
GGATCTGAGCATCGAAGAGAGATGGAGCTAGAGTAAGAATAAAGCGAAGA
TATAATATACCTGGTATATATATACTTCGTATATATATATATATATATAT
ATATATTTTTTTTTCCGTCCCTTTTATTATATTCTCCCGATTCTTTCTCT
AGCTCCATCATCTCTCTTCGTAACTCAGATCCGGGGTCACATAGCAGGAG
CTCCTCCCGCCTTCCCGCTACGGTACGTGCCTACATTTTTGTCGCGAGAA
GAGTGCAGCACTTTCTTCCCTCGTCGACTTTCATCGAAATATGCTCACAA
TGTCGCGTTTTCCGCGACGAAAGATGGCACAGAAAAGTGCCACCGGGGAT
CGAACCCCCAACCTCCGCCAACAGACTCTGAGAGGCGAACACCCTAACCA
CCAGACTGTTGGGCCACCCCTATATATGGGACGAAAAAAAAAAAAATGTA
TGTCCGAAATTTAAACCGGGCATAGACGTGGCACAAAGAGGAGGCGGCGA
AGAGTAGTGCACGTCATGCGAAGAGGGCCGGGGAAGTCCGAAGTAGCAAG
ATGGGGACCGGGAGGGGCAGTAGTAGCAGCAAATTTATTACTGCCGCCGA
TGAGAGTAAGGAGGAGATGGCAAACCGGGTAGAAATGTTTCAGTGTGACT
AACAGTCCCCGTACCTCCCTCCCGTAGCCCCAAGTATCGTTGACTTTCTG
ATCTTCGTTCTGCGTTTTGTTTTGTCTGTCTTCGTTCTGCCCCCGTTTTG
TTTTGTCCTGTGGCATGTTTTGCTCGCTTCTTCTTTATTGTTTCTTCCCA
TCTTTTTTTATTTTTGCTTTCTTTCTTTCTTTTTTCTTCTCTTTTATATG
TTTTTTGCGATTTTTTTGATATGTTAGCCTGTGACCACGGAATTTCGTGT
CTTTCTAGGGTGGAAGATCCAGTACAGACTCTGAGTACGCTAGTGGATGT
CGTAGAGTGGAATGGACGACTTTTAATGTGAAGACAACAACAACAACAAC
AACAACAACAATAGAGAATCGGGCGAGAAGATAATAAACGGGACGGAAAA
AATAAAATAAATAAAAATAGATAATAGGGCGAAGATAATAAATGGGACGG
AGAAATAAGTATATATATATAATTTCGATCAGACAGAAGACAAGAAGAAA
CAAGGGGTATTATCATATTTCGCTCTCCACGAGACCTAACCGGTCAGATC
GAACCCACAGGCATAATTAGATAGATGATGAATCGGACGCTATCACAGCA
GCAGCAGTCACACAACTAACAACACCATGCCACAGCACAAAACAACAACA
ACAGTAGTAGTACCACGCTTGCTTGTATTACTACTACTACTTCGTATACT
ACTACCACATATACATACATACACCCGCCCACCCGACATCCCACCCCCGC
CCCCCCCTGTCATTTATCGAATATTATCCGCCTCGCAGGTGGATGCCGAC
AGATGAAAATGTTAGCAATGCCTTCCTGCAGGTGGCCATCGACGTGCTAG
TCCTGGACCCTGCGTACGCCCTGCTGTTCATCGTGACTACCGGTCTGCTT
GAAGGCCTCGCTATGGAGGGCGATATCATCCCCATGTTGAAGGCAGACTA
CGCGACCCTGGCTTTGAGCTTGATGGCAATGGGGCTGGTGTTGGCCCCGC
CACAGATATACCTGTTCAAGCGGTTTGCCTTGAAGTGGCGCGTCTTGATT
GCCGACATTATAGACCTGCTGTGGACATTTTTAGCTTGTTTGGTCATGGG
CTCTAACTAA
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Coding sequence (CDS) from alignment at D-herbacea_M_contig93:1119948..1125557+

>mRNA_D-herbacea_M_contig93.15923.1 ID=mRNA_D-herbacea_M_contig93.15923.1|Name=mRNA_D-herbacea_M_contig93.15923.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=828bp|location=Sequence derived from alignment at D-herbacea_M_contig93:1119948..1125557+ (Desmarestia herbacea DmunM male)
CTGCAGGCGGTGCGGCGGACCCTGGCTGTTGCAATCGACGGCTTCTGCTT
CAACGCACCGCTCCTTCACTACGCATACGACGCATTGGAAAGCTGCAGGC
GGTGCGGCGGACCCTGGCTGTTGCAATCGACGGCTTCTGCTTCAACGCAC
CGCTCCTTCACTACGCATACGACGCATTGGAAAGGTGGATGCCGACAGAT
GAAAATGTTAGCAATGCCTTCCTGCAGGTGGCCATCGACGTGCTAGTCCT
GGACCCTGCGTACGCCCTGCTGTTCATCGTGACTACCGGTCTGCTTGAAG
GCCTCGCTATGGAGGGCGATATCATCCCCATGTTGAAGGCAGACTACGCG
ACCCTGGCTTTGAGCTTGATGGCAATGGGGCTGGTGTTGGCCCCGCCACA
GATATACCTGTTCAAGCGGTTTGCCTTGAAGTGGCGCGTCTTGATTGCCG
ACATTATAGACCTGCTGTGGACATTTTTAGCTTGTTTGGTCATGGGCTCT
AACTAAGTGGATGCCGACAGATGAAAATGTTAGCAATGCCTTCCTGCAGG
TGGCCATCGACGTGCTAGTCCTGGACCCTGCGTACGCCCTGCTGTTCATC
GTGACTACCGGTCTGCTTGAAGGCCTCGCTATGGAGGGCGATATCATCCC
CATGTTGAAGGCAGACTACGCGACCCTGGCTTTGAGCTTGATGGCAATGG
GGCTGGTGTTGGCCCCGCCACAGATATACCTGTTCAAGCGGTTTGCCTTG
AAGTGGCGCGTCTTGATTGCCGACATTATAGACCTGCTGTGGACATTTTT
AGCTTGTTTGGTCATGGGCTCTAACTAA
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