mRNA_D-herbacea_M_contig92.15877.1 (mRNA) Desmarestia herbacea DmunM male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_M_contig92.15877.1
Unique NamemRNA_D-herbacea_M_contig92.15877.1
TypemRNA
OrganismDesmarestia herbacea DmunM male (Desmarestia herbacea DmunM male)
Homology
BLAST of mRNA_D-herbacea_M_contig92.15877.1 vs. uniprot
Match: D7G0W9_ECTSI (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0W9_ECTSI)

HSP 1 Score: 320 bits (820), Expect = 8.900e-104
Identity = 180/285 (63.16%), Postives = 199/285 (69.82%), Query Frame = 3
Query:   54 MQALRSSVLSQGSLRVVRGGSRGSTGRGWYQRYQRMGPDAFRKARSPDAFDW----AAQQQDCVAEXXXXXXXXXXXXXXXXAFFDLAVDDVPAGRVEFELASDLLPVTCENFLRLCEGGAVAPKQPRALRLHADGVEQEEEEDGIEDEQGT------------LGYEGSKIHRIVSGTGIMGGDVEGAGGARSHSAF-GTRFFPDEAFLIPHTAPGLLTMANSGVHTNGSQFFITVGPAGHLDGRSVAFGRVTSGLEVVRAISGMYGIRGKPVSDIKVDQCGEI 857
            MQALR+SVL+QGSL+ VRGG+R STGRGWYQRYQRMGPDAFRKAR+P+ FDW    A    +  AE                AFF ++VD VPAGRVEFELASDLLPVT ENFLRLC G  VA     A  L                                LGY+GS IHR+V+GTGIMGGDVEG GG RSHSAF G RFFPDEAFLIPHTAPGLLTMANSG+HTNGSQF+IT   AGHLDGRSVAFGRVT GLEVVRA+ GMY IRGKPVS+I +++CGEI
Sbjct:    1 MQALRTSVLAQGSLQAVRGGTRASTGRGWYQRYQRMGPDAFRKARAPNPFDWDTPLAPPAPEAGAEERQQGGSGRRRPRRR-AFFAMSVDGVPAGRVEFELASDLLPVTSENFLRLCNGVTVASAAGEATLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELGYKGSVIHRVVTGTGIMGGDVEGYGGKRSHSAFSGMRFFPDEAFLIPHTAPGLLTMANSGLHTNGSQFYITTEAAGHLDGRSVAFGRVTKGLEVVRAVYGMYSIRGKPVSEITIEECGEI 284          
BLAST of mRNA_D-herbacea_M_contig92.15877.1 vs. uniprot
Match: A0A836C8D9_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8D9_9STRA)

HSP 1 Score: 220 bits (561), Expect = 9.990e-66
Identity = 119/265 (44.91%), Postives = 157/265 (59.25%), Query Frame = 3
Query:   54 MQALRSSVLSQGSLRVVRGGSRGSTGRGWYQRYQRMGPDAFRKARSPDAFDWAAQQQDCVAEXXXXXXXXXXXXXXXXAFFDLAVDDVPAGRVEFELASDLLPVTCENFLRLCEGGAVAPKQPRALRLHADGVEQEEEEDGIEDEQGTLGYEGSKIHRIVSGTGIMGGDVEGAGGARSHSAFGTRFFPDEAFLIPHTAPGLLTMANSGVHTNGSQFFITVGPAGHLDGRSVAFGRVTSGLEVVRAISGMYGIRGKPVSDIKVDQC 848
            MQA R + +  G+LR  R  +RGS G GWY ++++ G DAF + R P  FDW A                        A+ ++A+     G+VEFELASDLLPVTC+NFL+LC G A  P          DG                L Y+G+ IH +  G G+MGGDVEG  G +SHS  G R+F DE F IPH++ GLLTMANSG+ TNGSQF++T+GPA H+DGRSVAFGRV  G++VVR + G++ ++ KPVS + +  C
Sbjct:    1 MQAFRVATVVPGALRHTRM-ARGSRGWGWYLKHKQQGDDAFIRDRPPTPFDWDAAPA----------------APRKRAYVEIAIAGENIGKVEFELASDLLPVTCKNFLQLCTGAATGP----------DGA--------------PLTYKGTPIHTLAKGVGLMGGDVEGGNGKKSHSGLGKRYFRDEGFFIPHSSEGLLTMANSGIDTNGSQFYVTIGPAPHMDGRSVAFGRVVGGMDVVRRVFGLFSVKAKPVSKVVITDC 224          
BLAST of mRNA_D-herbacea_M_contig92.15877.1 vs. uniprot
Match: W7TUT6_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TUT6_9STRA)

HSP 1 Score: 193 bits (490), Expect = 1.150e-54
Identity = 107/266 (40.23%), Postives = 142/266 (53.38%), Query Frame = 3
Query:  114 SRGSTGRGWYQRYQRMGPDAFRKARSPDAFDWAAQQQDCVAEXXXXXXXXXXXXXXXXAFFDLAVDDVPAGRVEFELASDLLPVTCENFLRLCEGGAVAPKQPRALRLHADGVEQEEEEDGIEDEQGTLGYEGSKIHRIVSGTGIMGGDVEGA---------------GGARSHSAFGTRFFPDEAFLIPHTAPGLLTMANSGVHTNGSQFFITVGPAGHLDGRSVAFGRVTSGLEVVRAISGMYGIRGKPVSDIKVDQCGEIEGE 866
            SRG  GRGWY+ Y+  GP+ F++ R P  FDW+                          F  +++D  P GR+  ELA D+LP+  ENF  LC+G                       E G E  +  LGY GS+IHR+V G GI+GGD+  A               GGA +HS  G RFFPDE+F IPHT PGLL+M ++G H NGS F I+     HLDGRSV FGRV  G+EV+ A++  Y IRG+PV+ ++V++ G +E E
Sbjct:   32 SRGDNGRGWYELYKEAGPEGFKRYRPPTPFDWSPPST---------ATPPSEAPRRSKVFLGISLDKEPLGRIVLELADDILPLAAENFRLLCQGAG--------------------REGGREGGKTGLGYAGSRIHRVVKGAGIVGGDLSTARAPPSSGAIRPRQRQGGAGNHSGLGPRFFPDESFQIPHTGPGLLSMVSAGAHRNGSVFHISTHACPHLDGRSVVFGRVVGGVEVLEAVANTYTIRGRPVAVVRVEEAGVMEAE 268          
BLAST of mRNA_D-herbacea_M_contig92.15877.1 vs. uniprot
Match: A0A4D9CP74_9STRA (PPIase cyclophilin-type domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CP74_9STRA)

HSP 1 Score: 194 bits (493), Expect = 9.960e-54
Identity = 108/266 (40.60%), Postives = 142/266 (53.38%), Query Frame = 3
Query:  114 SRGSTGRGWYQRYQRMGPDAFRKARSPDAFDWAAQQQDCVAEXXXXXXXXXXXXXXXXAFFDLAVDDVPAGRVEFELASDLLPVTCENFLRLCEGGAVAPKQPRALRLHADGVEQEEEEDGIEDEQGTLGYEGSKIHRIVSGTGIMGGDVEGA---------------GGARSHSAFGTRFFPDEAFLIPHTAPGLLTMANSGVHTNGSQFFITVGPAGHLDGRSVAFGRVTSGLEVVRAISGMYGIRGKPVSDIKVDQCGEIEGE 866
            SRG  GRGWY+ Y+  GP+ F++ R P  FDW+                          F  L++D  P GR+  ELA D+LP+  ENF  LC+G                       E G E  +  LGY GS+IHR+V G GI+GGD+  A               GGA +HS  G RFFPDE+F IPHT PGLL+M ++G H NGS F I+     HLDGRSV FGRV  G+EV+ A++  Y IRG+PV+ ++V++ G +E E
Sbjct:  147 SRGDNGRGWYELYKEAGPEGFKRYRPPTPFDWSRPSTATTPSEAPRRSK---------VFLGLSLDKEPLGRIVLELADDILPLAAENFRLLCQGAG--------------------REGGREGGKTGLGYAGSRIHRVVKGAGIVGGDLSTARAPPSSGAIRPRQRQGGAGNHSGLGPRFFPDESFQIPHTGPGLLSMVSAGAHRNGSVFHISTHACPHLDGRSVVFGRVVGGVEVLEAVANTYTIRGRPVAVVRVEEAGVMEAE 383          
BLAST of mRNA_D-herbacea_M_contig92.15877.1 vs. uniprot
Match: A0A6U1PLG6_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1PLG6_9STRA)

HSP 1 Score: 188 bits (477), Expect = 3.220e-53
Identity = 107/263 (40.68%), Postives = 139/263 (52.85%), Query Frame = 3
Query:   63 LRSSVLSQGSLRVVRGGSRGSTGRGWYQRYQRMGPDAFRKARSPDAFDWAAQQQDCVAEXXXXXXXXXXXXXXXXAFFDLAVDDVPAGRVEFELASDLLPVTCENFLRLCEGGAVAPKQPRALRLHADGVEQEEEEDGIEDEQGTLGYEGSKIHRIVSGTGIMGGDVEGAGGARSHSAFGTRFFPDEAFLIPHTAPGLLTMANSGVHTNGSQFFITVGPAGHLDGRSVAFGRVTSGLEVVRAISGMYGIRGKPVSDIKVDQCG 851
             R  ++       VRG SR + G GWY++Y+  G +AF+K + P  FDW  + +  V                   +F L +D    G ++FELA D+LP TC NF  LC G                           E EQG L Y GS IH IV G G++GGDVE   G  +HS  G R+F DE F+IPH   GLL+MA SGVHT  SQF++T+ PA H+DGR VAFGR+ SGL+V+ A+   Y  RGKP + I +  CG
Sbjct:    6 FRGHIIQSPHTFAVRG-SRAAKGWGWYKKYKEGGEEAFKKYQPPTPFDWEDESRSPVINKGIRSRP----------YFQLTIDGEDVGEIQFELADDILPETCSNFKALCTG---------------------------ESEQG-LSYCGSPIHHIVKGVGVIGGDVEKHDGTGNHSGLGKRYFEDEGFVIPHAEGGLLSMATSGVHTCASQFYLTLYPAPHMDGRCVAFGRIISGLDVLEAVYKQYSTRGKPAASILISACG 229          
BLAST of mRNA_D-herbacea_M_contig92.15877.1 vs. uniprot
Match: A0A7S2BM91_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BM91_9STRA)

HSP 1 Score: 176 bits (446), Expect = 4.200e-48
Identity = 100/254 (39.37%), Postives = 137/254 (53.94%), Query Frame = 3
Query:   90 SLRVVRGGSRGSTGRGWYQRYQRMGPDAFRKARSPDAFDWAAQQQDCVAEXXXXXXXXXXXXXXXXAFFDLAVDDVPAGRVEFELASDLLPVTCENFLRLCEGGAVAPKQPRALRLHADGVEQEEEEDGIEDEQGTLGYEGSKIHRIVSGTGIMGGDVEGAGGARSHSAFGTRFFPDEAFLIPHTAPGLLTMANSGVHTNGSQFFITVGPAGHLDGRSVAFGRVTSGLEVVRAISGMYGIRGKPVSDIKVDQCG 851
            + R +    +GS+GRGWY++Y++ G + FRK   P  FDW+      +                   + D++VD    GRVE EL  ++LP+T  NF +LC G                     E  DG       L Y  + IH +V  + I+ GDVE   G  SHSA GTR+F DEA ++PHT  G+++M N GV TNGSQF+IT  P+  LDG SVAFGRVTSG++VV +I+ ++ IRG PVS + V   G
Sbjct:   56 AARAMGTAKQGSSGRGWYKKYEKEGEEGFRKYNPPTPFDWSEAGATSLV------------------YLDVSVDGADPGRVEIELLDEILPITTTNFKKLCTG---------------------ENPDG-------LSYADTPIHHVVKDSAIVAGDVELKTGKGSHSALGTRYFDDEALVMPHTEAGIVSMVNGGVDTNGSQFYITTAPSPQLDGYSVAFGRVTSGMDVVGSITNLFSIRGVPVSTVTVTAAG 263          
BLAST of mRNA_D-herbacea_M_contig92.15877.1 vs. uniprot
Match: A0A7S3NRJ3_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NRJ3_9STRA)

HSP 1 Score: 163 bits (412), Expect = 3.690e-43
Identity = 100/256 (39.06%), Postives = 135/256 (52.73%), Query Frame = 3
Query:   90 SLRVVRGGSRGSTGRGWYQRYQRMGPDAFRKARSPDAFDWAAQQQDCVAEXXXXXXXXXXXXXXXXAFFDLAVDDVPAGRVEFELASDLLPVTCENFLRLCEGGAVAPKQPRALRLHADGVEQEEEEDGIEDEQGTLGYEGSKIHRIVS-GTGIMGGDVEGAGGARSHSAFGTRFFPDEAFLIPHTAPGLLTMANSGVHTNGSQFFITVGPAGHLDGRSVAFGRVTSGLEVVRA-ISGMYGIRGKPVSDIKVDQCG 851
            S R+ R    GS G GWY++Y++ GPD+FR+   P  FD+ A     + +                 FFD+ V +   GR+EFEL  +LLPVTCENF  LC G A     P   R                       Y+GS   R+++ G  IMGGDV  AGG  SHSA+  R++ DE F +PH+  G+L+ AN+G+ TNGSQF+IT+    H+DGR VAFGRV +G +V+   I  +Y  RG P   I +   G
Sbjct:   34 SQRMKRYTKSGSPGHGWYEKYKKFGPDSFRRWERPKPFDFDAADAQVLGKRTY-------------CFFDIGVAESKVGRIEFELLDELLPVTCENFKLLCSGFA-----PSGFR-----------------------YKGSHFIRLMARGAAIMGGDVATAGG--SHSAWKQRYYADEGFFVPHSQAGILSSANAGIDTNGSQFYITLKECPHMDGRCVAFGRVATGYDVITGLIKDVYMQRGIPTKSITILDAG 246          
BLAST of mRNA_D-herbacea_M_contig92.15877.1 vs. uniprot
Match: A0A7S1UAR4_9STRA (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UAR4_9STRA)

HSP 1 Score: 158 bits (399), Expect = 9.080e-42
Identity = 91/246 (36.99%), Postives = 125/246 (50.81%), Query Frame = 3
Query:  129 GRGWYQRYQRMGPDAFRKARSPDAFDWAAQQQDCVAEXXXXXXXXXXXXXXXXAFFDLAVDDVPAGRVEFELASDLLPVTCENFLRLCEGGAVAPKQPRALRLHADGVEQEEEEDGIEDEQGTLGYEGSKIHRIVSGTGIMGGDVEGAGGARSHSAFGTRFFPDEAFLIPHTAPGLLTMANSGVHTNGSQFFITVGPAGHLDGRSVAFGRVTSGLEVVRAISGMYGIRGKPVSDIKVDQCGEIEGE 866
            G GWY++Y++ GP+ FRK + P  FDW +                         FFD+ VD    GR+  E   D+LPVT ENF +L    A+APK                           L Y+ S IHRI+  + ++ GDVEG  G  SHSA G R+F  E F +PH+ PG+++M ++    NGSQF+IT+ P  HLDGR  AFGRV  G+++V+ + G +     PVSDI   + G I  E
Sbjct:   28 GTGWYRKYEKEGPEGFRKYKLPTPFDWDSNDPS----------------KRKRVFFDVNVDGESKGRIVVETLDDVLPVTSENFQKL----AMAPKDA------------------------WLTYKNSGIHRIMKTSALVAGDVEGGSGRASHSALGRRYFEHEGFYVPHSEPGIVSMVSNKRDENGSQFYITIEPCPHLDGRCTAFGRVVEGMDLVQELRGTFSRHEIPVSDISFGETGVIGAE 229          
BLAST of mRNA_D-herbacea_M_contig92.15877.1 vs. uniprot
Match: F0Y6J0_AURAN (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6J0_AURAN)

HSP 1 Score: 152 bits (383), Expect = 2.420e-40
Identity = 87/192 (45.31%), Postives = 113/192 (58.85%), Query Frame = 3
Query:  291 FFDLAVDDVPAGRVEFELASDLLPVTCENFLRLCEGGAVAPKQPRALRLHADGVEQEEEEDGIEDEQGTLGYEGSKI-HRIVSGTGIMGGDVEGAGGARSHSAF-GTRFFPDEAFLIPHTAPGLLTMANSGVHTNGSQFFITVGPAGHLDGRSVAFGRVTSGLEVVRAISG-MYGIRGKPVSDIKVDQCGEI 857
            FFD+AVD   AGR+E EL  +LLP TCENF  LC  GA +                              GY G+ +  R+V G G++GG V+  GG  SHSAF G R F DE F +PH  PGLL+MAN+GV TNGSQF++T   A H+DGR VAFGRV +GL+VV+ ++  +Y  RG PV  +++  CG +
Sbjct:    3 FFDVAVDGEAAGRIELELLDELLPETCENFRLLCGDGAPSG----------------------------FGYAGANLARRVVKGVGLLGGVVDAPGG--SHSAFAGRRVFADEGFFVPHAEPGLLSMANAGVDTNGSQFYLTTAAAPHMDGRCVAFGRVAAGLDVVQTLADTLYTQRGVPVEHVEIAACGTL 164          
BLAST of mRNA_D-herbacea_M_contig92.15877.1 vs. uniprot
Match: A0A7S4EDH8_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EDH8_9STRA)

HSP 1 Score: 153 bits (386), Expect = 5.400e-40
Identity = 99/251 (39.44%), Postives = 129/251 (51.39%), Query Frame = 3
Query:  120 GSTGRGWYQRYQRMGPDAF-RKARSPDAFDWAAQQQDCVAEXXXXXXXXXXXXXXXXAFFDLAVDDVPAGRVEFELASDLLPVTCENFLRLCEGGAVAPKQPRALRLHADGVEQEEEEDGIEDEQGTLGYEGSKIHRIVSGTGIMGGDVEGAGGARSHSAFGTR-FFPDEAFLIPHTAPGLLTMANSGVHTNGSQFFITVGPAGHLDGRSVAFGRVTSGLEVVRAI-SGMYGIRGKPVSDIKVDQCGEIEG 863
            G+  RGWYQRY   GP+ F R +   ++FDW A +    +                  F +++VD   AGR+  EL  +LLP T ENF  LC G A +                     G    Q T         R+V G G++GG +  A G  S SAF  R  F DE F +PH  PGLLTMA+SGV  NGSQF++T+ PA HLDGR VAFGR+  GL+VVR +   +Y  RG PV  + V+ CG ++G
Sbjct:   19 GTHSRGWYQRYAARGPEGFLRPSPGGESFDWDAPEAKTRSR----------------CFLEVSVDGQRAGRLVVELLDELLPETSENFRLLCSGDAPS---------------------GASYAQSTF------ARRVVKGVGLLGGALPDAPGG-SRSAFADRPLFADEGFFVPHAEPGLLTMASSGVDGNGSQFYVTIEPAPHLDGRCVAFGRLVEGLDVVRHLHDSLYTQRGVPVEKVVVEACGVVDG 225          
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_M_contig92.15877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0W9_ECTSI8.900e-10463.16Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectoca... [more]
A0A836C8D9_9STRA9.990e-6644.91Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribon... [more]
W7TUT6_9STRA1.150e-5440.23Peptidyl-prolyl cis-trans isomerase n=1 Tax=Nannoc... [more]
A0A4D9CP74_9STRA9.960e-5440.60PPIase cyclophilin-type domain-containing protein ... [more]
A0A6U1PLG6_9STRA3.220e-5340.68Peptidyl-prolyl cis-trans isomerase n=1 Tax=Fibroc... [more]
A0A7S2BM91_9STRA4.200e-4839.37Peptidyl-prolyl cis-trans isomerase n=1 Tax=Floren... [more]
A0A7S3NRJ3_9STRA3.690e-4339.06Peptidyl-prolyl cis-trans isomerase n=1 Tax=Aureou... [more]
A0A7S1UAR4_9STRA9.080e-4236.99Peptidyl-prolyl cis-trans isomerase n=2 Tax=Phaeom... [more]
F0Y6J0_AURAN2.420e-4045.31Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
A0A7S4EDH8_9STRA5.400e-4039.44Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pelago... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_M_contig92contigD-herbacea_M_contig92:1181919..1185687 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunM male vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunM male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score323.9
Seed ortholog evalue7e-86
Seed eggNOG ortholog2880.D7G0W9
KEGG koko:K01802,ko:K05864,ko:K20097
KEGG Pathwayko04217,ko04218,map04217,map04218
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0546@2759
Ec32 ortholog descriptionCyclophilin-type peptidyl-prolyl cis-trans isomerase domain
Ec32 orthologEc-23_002000.1
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110
Exons3
Model size1442
Cds size816
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_M_contig92.15877.1prot_D-herbacea_M_contig92.15877.1Desmarestia herbacea DmunM malepolypeptideD-herbacea_M_contig92 1181972..1185114 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935742.2150588-UTR-D-herbacea_M_contig92:1181918..11819711622935742.2150588-UTR-D-herbacea_M_contig92:1181918..1181971Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig92 1181919..1181971 +
1690880683.8557277-UTR-D-herbacea_M_contig92:1181918..11819711690880683.8557277-UTR-D-herbacea_M_contig92:1181918..1181971Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig92 1181919..1181971 +
1622935742.3483024-UTR-D-herbacea_M_contig92:1185114..11856871622935742.3483024-UTR-D-herbacea_M_contig92:1185114..1185687Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig92 1185115..1185687 +
1690880683.902642-UTR-D-herbacea_M_contig92:1185114..11856871690880683.902642-UTR-D-herbacea_M_contig92:1185114..1185687Desmarestia herbacea DmunM maleUTRD-herbacea_M_contig92 1185115..1185687 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935742.2303805-CDS-D-herbacea_M_contig92:1181971..11824361622935742.2303805-CDS-D-herbacea_M_contig92:1181971..1182436Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig92 1181972..1182436 +
1690880683.869912-CDS-D-herbacea_M_contig92:1181971..11824361690880683.869912-CDS-D-herbacea_M_contig92:1181971..1182436Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig92 1181972..1182436 +
1622935742.2510908-CDS-D-herbacea_M_contig92:1184389..11845141622935742.2510908-CDS-D-herbacea_M_contig92:1184389..1184514Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig92 1184390..1184514 +
1690880683.8811507-CDS-D-herbacea_M_contig92:1184389..11845141690880683.8811507-CDS-D-herbacea_M_contig92:1184389..1184514Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig92 1184390..1184514 +
1622935742.2683935-CDS-D-herbacea_M_contig92:1184888..11851141622935742.2683935-CDS-D-herbacea_M_contig92:1184888..1185114Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig92 1184889..1185114 +
1690880683.8933408-CDS-D-herbacea_M_contig92:1184888..11851141690880683.8933408-CDS-D-herbacea_M_contig92:1184888..1185114Desmarestia herbacea DmunM maleCDSD-herbacea_M_contig92 1184889..1185114 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_M_contig92.15877.1

>prot_D-herbacea_M_contig92.15877.1 ID=prot_D-herbacea_M_contig92.15877.1|Name=mRNA_D-herbacea_M_contig92.15877.1|organism=Desmarestia herbacea DmunM male|type=polypeptide|length=272bp
MQALRSSVLSQGSLRVVRGGSRGSTGRGWYQRYQRMGPDAFRKARSPDAF
DWAAQQQDCVAENNSGGGTVRERRRRRRAFFDLAVDDVPAGRVEFELASD
LLPVTCENFLRLCEGGAVAPKQPRALRLHADGVEQEEEEDGIEDEQGTLG
YEGSKIHRIVSGTGIMGGDVEGAGGARSHSAFGTRFFPDEAFLIPHTAPG
LLTMANSGVHTNGSQFFITVGPAGHLDGRSVAFGRVTSGLEVVRAISGMY
GIRGKPVSDIKVDQCGEIEGE*
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mRNA from alignment at D-herbacea_M_contig92:1181919..1185687+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_M_contig92.15877.1 ID=mRNA_D-herbacea_M_contig92.15877.1|Name=mRNA_D-herbacea_M_contig92.15877.1|organism=Desmarestia herbacea DmunM male|type=mRNA|length=3769bp|location=Sequence derived from alignment at D-herbacea_M_contig92:1181919..1185687+ (Desmarestia herbacea DmunM male)
CAGGGAATGTGGCACAGAGTACAGACACACAGTGACCAAGAGTGAGCTAA AGCATGCAGGCGCTTCGATCGAGTGTGCTGTCCCAGGGTTCGCTGCGTGT AGTACGAGGAGGGAGCCGAGGTTCGACCGGAAGAGGATGGTACCAGCGAT ACCAACGCATGGGACCTGATGCCTTTCGTAAGGCCAGATCTCCCGATGCT TTCGACTGGGCAGCACAGCAGCAGGACTGCGTAGCCGAGAATAACAGTGG AGGTGGGACGGTGCGGGAACGAAGGCGGCGGCGTCGAGCTTTTTTTGACT TGGCGGTAGATGATGTGCCTGCTGGACGCGTGGAGTTTGAGCTCGCGTCT GATCTGTTGCCTGTAACGTGCGAGAATTTCTTGCGCTTGTGTGAGGGCGG CGCGGTGGCGCCTAAGCAGCCGAGAGCGCTGCGATTGCATGCTGATGGCG TGGAGCAGGAGGAAGAGGAGGACGGCATAGAAGATGAGCAGGGTACTCTT GGCTACGAAGGTTCAAAGGTGAAGTGTTGCGGTGTGTTTACGAAATTGTT GCGGCTGCCAAGATTGATTGTGACATCATCATGCTCAGGTGTTCGTACTC GTCTATCATACAATAGAGTCGCACAGTGTTTTCAACCACGAACTCTCGGT AAGGTTTGTGCTCTAACTGGCAACTTGCAGTGTTCTGCAACAGTAGTAGT GTAGCTGGTGCGTTGTATTCACGTGCTGCTACGAGTATTTTTGTTCGGAA TACTTCACTTACGACCTCCCGAGTTTCTCTAACTTGATTGGTTATATATA GGGGAATGTGTGTGCCCATCGTACGGCTCTATAGTAGCCGTCCGCAGTAC TATGATAGTAGTGCGTCTAACTCTTTTCGGAGCATCAATCATACACAGCC ATCACCCTGGCGGAACATATATGTGTTTTTTCAACCTCGCCCGCGGGTCC TCCGTGCCCTAACCGCCGAACAATAAGTTGAAAGTTAACCAGCGCATTGG GTGGGGACTCCGTTAGTCTAGGGTAGCAATACAAGTCGGTCAGTATTTGG TATGTGACAGTTGATTTTATCATTATCTCGACCGCTCGCTTCCCACGGTG CTTTCTTTGACTTGGTAATAGTACCAAATACGGCGTACGCGATAGAGCGT GGTGAACAGGACCAGGGACGCGTTGCGCGGCGGTACACTTGTGGACGCCA ATTACACCATCAATTTGGTTTCCGTAGCTTATTGCGTGGACATCATCTTG TCGTCTAATTAATCGACACGATACCAAGACGTACGAAACAAAAGGGAGCG CCACCTCACCCGCTCGCCTATTCATGGATTCATACGAGCTGGGCCAGCCA AGAAACGGATTTTACACCTACATGGTCCTGCTCAGCCCATTTTTTCGAGT TTTGATAGGAAAATTGGTACAGTGTTACTTGAGGGTATAGCGAAGCGGTT GCCGTCGAGATTTTTTTTTTATTTCTTACTTTGCGTGAAGTATGGCAATT TTAATGAAAACGTGATTTAGTTTTTTGACAGATATTCGAGAAACAAAAAG AGGCAAAACTATGTCTTAACCGCAATCGTTCGGAAAGAAAGAGTCGAATA ACGTGTGAAAATTTCACGAACAAAGACATAAAATTGGGTTGAGAATTCCA TATTTTTGACTATTTTTCAAAACGACTAGGAATTTGTATTGGGAGCTTCG TTTTGGCTATAACTTTACATGTGTGGACAAAACGAAAACTATGTCTGAAC CGCAATCGTTCGGCAAACGAACAACGAATAACGTGCCTAATTTTCATGAA CGAAGACATAAAATTGGGGTGAGAATTCCACTTTTTGACGGTTTTTCAAA ACGACTTGAAAATTGTATTGAAAAACTAGTTTTGGCCATGGCTTTTGACG TATTGATAATTGAGAAAATTTACAGATATTTTGCGTTCCGGCATGTTCCC AGCGAGGTGCTCACCAATTTTCAGTGCCATCCGCGACATTGTCAAACCGG CTTGTGAAATTTATTATAGGCATTTCAGTATTGAAATTTCGAAATTTCCT CAGGTGCTGTCTGATTGACGAGAAACTTACAAATTAAGAAATCTCGTCGA GATCATGCCAGATTCCAAAATTTTCAAAGTCAGCATGCCCACAGTAGTAT CAGGGTAGTTTTCCCCAAATTTCAAGCCCTAACTCTTACAACTCGTGGCG CAAGGGCCTTTGGAAACTTATGCAGCTTCTTGGCAGCTCGGTAACATATG CACGAGCTTGACGGTGCCGTGGATGATCGTCCTCGCAAATATTACAACTA CACGGCCTTCGTTTGCGTGGGCGCATTCATTCCCCCACGTTGAATATATA CGCGCACATTTCAGATGGTAGACTCTCTTCGCCGACACACAAGCTAGTCG TGAACTCCTTACCTCTGCCCTCCTGTTCCTTCGCGGATGGGCCCCGTGCA CTTGCTTTGGCTGTTACATAGATTCACCGGATAGTGTCCGGCACGGGGAT CATGGGCGGGGACGTGGAGGGAGCTGGCGGCGCAAGGAGCCACTCCGCAT TCGGCACGCGTTTCTTCCCCGACGAGGCCTTCCTCATTCCGCACACGTAC GTTTCATATTTAGCGGGTGTAAGAGATGTCATTTTTCGTTTCTCGTTTCC GTCCCGTTTATTGTCTTTGCCCTATTCTATCTGTCTTCGTAACTCAGATC CGGGGTCATATATCAGGCACTCCTCCCTCGTCCCCACTACGGGACGTGCC TGCAGTTTTATCGCGAGAAGGGTGCAGCACTTGATTCCCTCGTCGACTTT CATCGAATTTCATGTAGGATTATATTGCGCAATGCTCTGAGGAGTTGTGT CTACAAGGAGGGTGTTGGTCACGACTACCGTGTTGTGCTGCTTCCTACCG CTTCCCCCCGTCTCAACACCTCTCTACCCGTCCCTCCCCCCGTCTCTCCC CTTTGCTCTTTCTTGCGCAGCGCACCAGGCCTGTTGACCATGGCCAACTC CGGTGTGCACACCAACGGCTCTCAGTTCTTCATTACTGTTGGTCCGGCGG GGCACCTGGATGGACGTTCGGTCGCTTTCGGACGGGTTACGTCGGGGTTA GAAGTAGTAAGGGCGATATCTGGTATGTACGGCATCAGGGGAAAGCCAGT TTCGGATATCAAGGTCGATCAATGCGGCGAGATCGAGGGGGAGTAGTGTG ATTGGCGGATTATTACGGTGGAGGGCCTGTTTTATTGTACTGCCGCGCTA TGATACTTTCATGCACGCCATTGATTTTTGAGTTTTTCAAGGTACACCGA ATCCGTCCTTCTTGCAAATTCTCTGGTCGACCCTGTACCGAGTGTCAAGG GACTTGCGTTAAGACACCTATTTTCCGCTTGCGGCTTCTTTCGAAACGTC TTGGTGCTCTGGGGAAATATTTATATTTGCACCTGAAGAATGCATGGGCT ACACGATCTATCTTGGTGTTGGGGTGGCGCCATGAGCGTAAGCGTCATTT GCCAACGGTACCCACGCTACAAATTGCACGCCTTGCACGATATGCGGGGA TGCCCGTGTGAGCCAATTTCACTATGCGCCTTAGCGTTTTAGAGCCGGTA CTTCTGCAGGGGACAGTATACACGGGCGAGGGCGGTACAACGCGCAATAG GTACTGTCGGGCGTACACAGATATCTTTCCACATGCTGCCATATTTTTGA TGTGGCGACGGTGGTGAGTGCTCTTGTTGGTAAGTGAGCTTGCGCAAGTC CCACAATACCGGAGGGGGG
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Coding sequence (CDS) from alignment at D-herbacea_M_contig92:1181919..1185687+

>mRNA_D-herbacea_M_contig92.15877.1 ID=mRNA_D-herbacea_M_contig92.15877.1|Name=mRNA_D-herbacea_M_contig92.15877.1|organism=Desmarestia herbacea DmunM male|type=CDS|length=1632bp|location=Sequence derived from alignment at D-herbacea_M_contig92:1181919..1185687+ (Desmarestia herbacea DmunM male)
ATGCAGGCGCTTCGATCGAGTGTGCTGTCCCAGGGTTCGCTGCGTGTAGT
ACGAGGAGGGAGCCGAGGTTCGACCGGAAGAGGATGGTACCAGCGATACC
AACGCATGGGACCTGATGCCTTTCGTAAGGCCAGATCTCCCGATGCTTTC
GACTGGGCAGCACAGCAGCAGGACTGCGTAGCCGAGAATAACAGTGGAGG
TGGGACGGTGCGGGAACGAAGGCGGCGGCGTCGAGCTTTTTTTGACTTGG
CGGTAGATGATGTGCCTGCTGGACGCGTGGAGTTTGAGCTCGCGTCTGAT
CTGTTGCCTGTAACGTGCGAGAATTTCTTGCGCTTGTGTGAGGGCGGCGC
GGTGGCGCCTAAGCAGCCGAGAGCGCTGCGATTGCATGCTGATGGCGTGG
AGCAGGAGGAAGAGGAGGACGGCATAGAAGATGAGCAGGGTACTCTTGGC
TACGAAGGTTCAAAGATGCAGGCGCTTCGATCGAGTGTGCTGTCCCAGGG
TTCGCTGCGTGTAGTACGAGGAGGGAGCCGAGGTTCGACCGGAAGAGGAT
GGTACCAGCGATACCAACGCATGGGACCTGATGCCTTTCGTAAGGCCAGA
TCTCCCGATGCTTTCGACTGGGCAGCACAGCAGCAGGACTGCGTAGCCGA
GAATAACAGTGGAGGTGGGACGGTGCGGGAACGAAGGCGGCGGCGTCGAG
CTTTTTTTGACTTGGCGGTAGATGATGTGCCTGCTGGACGCGTGGAGTTT
GAGCTCGCGTCTGATCTGTTGCCTGTAACGTGCGAGAATTTCTTGCGCTT
GTGTGAGGGCGGCGCGGTGGCGCCTAAGCAGCCGAGAGCGCTGCGATTGC
ATGCTGATGGCGTGGAGCAGGAGGAAGAGGAGGACGGCATAGAAGATGAG
CAGGGTACTCTTGGCTACGAAGGTTCAAAGATTCACCGGATAGTGTCCGG
CACGGGGATCATGGGCGGGGACGTGGAGGGAGCTGGCGGCGCAAGGAGCC
ACTCCGCATTCGGCACGCGTTTCTTCCCCGACGAGGCCTTCCTCATTCCG
CACACATTCACCGGATAGTGTCCGGCACGGGGATCATGGGCGGGGACGTG
GAGGGAGCTGGCGGCGCAAGGAGCCACTCCGCATTCGGCACGCGTTTCTT
CCCCGACGAGGCCTTCCTCATTCCGCACACCGCACCAGGCCTGTTGACCA
TGGCCAACTCCGGTGTGCACACCAACGGCTCTCAGTTCTTCATTACTGTT
GGTCCGGCGGGGCACCTGGATGGACGTTCGGTCGCTTTCGGACGGGTTAC
GTCGGGGTTAGAAGTAGTAAGGGCGATATCTGGTATGTACGGCATCAGGG
GAAAGCCAGTTTCGGATATCAAGGTCGATCAATGCGGCGAGATCGAGGGG
GAGTAGCGCACCAGGCCTGTTGACCATGGCCAACTCCGGTGTGCACACCA
ACGGCTCTCAGTTCTTCATTACTGTTGGTCCGGCGGGGCACCTGGATGGA
CGTTCGGTCGCTTTCGGACGGGTTACGTCGGGGTTAGAAGTAGTAAGGGC
GATATCTGGTATGTACGGCATCAGGGGAAAGCCAGTTTCGGATATCAAGG
TCGATCAATGCGGCGAGATCGAGGGGGAGTAG
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