mRNA_D-herbacea_F_contig100.254.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig100.254.1 vs. uniprot
Match: D7FHY7_ECTSI (General transcription factor IIH subunit 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY7_ECTSI) HSP 1 Score: 728 bits (1878), Expect = 2.290e-256 Identity = 378/500 (75.60%), Postives = 409/500 (81.80%), Query Frame = 3
Query: 153 MNTNVFDYLGRLPPEALDKLYG------QDAGQSDHGQWTCRALLQSLPQLAKQHVMRLLFVDGFVDKGMLKSWVKKEYQRVHTASVRKLVGLRLLLQSADGQEYRLNPPFRDNLQRALSASDKTPWQGNVPLTADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSIPPARVVKFMEESGLMRAVSRSGALRITDKGYEFMLKETHVQAWMVVHALINGYGRTQPGCRDDLLAFLFQLSYCKVGDAYPLEALTPTQRELAQDFVELGLLFKRKAKSKRFYPTSIAVNLIFGSVLA-DGGG------RAQQQTAGSVPVGKKEDDTTIQIIVETNFQVVAYTRSKLHYAMLSLFLELRARLPNVIIGAITRESMRRALATGIKGRQVLDFLKWHAHPVVRRRSPVVPENIADQILLWERERDRMVQSEGVLLDVSNAHDESYRRIVEFANGVGGLLWHSPFGASADGY-----------------NRKKLIIVTPRAV 1562
M+ NVFDYL RLPP+ALDKLYG G HGQWTCRALLQSLPQLAKQHVMRLLFV+G V KGMLKSWVKKEYQRVH ASVRKLV LR+LL SA GQEY+LNPPFR+NLQRAL ASDKTPWQG+VPL+ADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRS PPARVVKFMEESGLMR V GALRITDKGYEFMLKE HVQAWMVVHALINGYGRTQPGCRD+LLAFLFQLSYCKVGDAYPL ALT TQR+LAQDFVELGLLFKRKAKS RFYPTSIAVNLIFGS + D GG + + Q A K+EDDT+I IIVETNFQV+AYTRSKLH+AMLSLFLELRA LPN I+GAITRESMR+AL+TGIKGRQVLDFLKWHAHPVVRRR+PVVPENIADQ+LLWERERDRM +GVL+DVS A +++R + EFAN GLLW SP G RKKL++V+P V
Sbjct: 19 MSLNVFDYLERLPPDALDKLYGAAPPAADGQGGRSHGQWTCRALLQSLPQLAKQHVMRLLFVEGPVGKGMLKSWVKKEYQRVHAASVRKLVSLRVLLPSAGGQEYQLNPPFRENLQRALCASDKTPWQGDVPLSADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSTPPARVVKFMEESGLMRPVRGRGALRITDKGYEFMLKEAHVQAWMVVHALINGYGRTQPGCRDELLAFLFQLSYCKVGDAYPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGSSPSGDAGGAXXXXTQRKPQPAXXXXXXKREDDTSIHIIVETNFQVIAYTRSKLHFAMLSLFLELRALLPNAIVGAITRESMRKALSTGIKGRQVLDFLKWHAHPVVRRRTPVVPENIADQVLLWERERDRMEHRDGVLVDVSYASRDAFRGMTEFANAKQGLLWSSPLGGEDXXXXXXXXXXXXXXXXXXLAGRKKLMVVSPGIV 518
BLAST of mRNA_D-herbacea_F_contig100.254.1 vs. uniprot
Match: A0A6H5KJZ4_9PHAE (General transcription factor IIH subunit 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJZ4_9PHAE) HSP 1 Score: 495 bits (1274), Expect = 6.280e-167 Identity = 266/369 (72.09%), Postives = 279/369 (75.61%), Query Frame = 3
Query: 153 MNTNVFDYLGRLPPEALDKLYG------QDAGQSDHGQWTCRALLQSLPQLAKQHVMRLLFVDGFVDKGMLKSWVKKEYQRVHTASVRKLVGLRLLLQSADGQEYRLNPPFRDNLQRALSASDKTPWQGNVPLTADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSIPPARVVKFMEESGLMRAVSRSGALRITDKG------------------------------------------------YEFMLKETHVQAWMVVHALINGYGRTQPGCRDDLLAFLFQLSYCKVGDAYPLEALTPTQRELAQDFVELGLLFKRKAKSKRFYPTSIAVNLIFGSVLAD-----GGGRAQQ--QTAGSVPV 1076
M+ NVFDYL RLPP+ALDKLYG Q G HGQWTCRALLQSLPQLAKQHVMRLLFV+G V KGMLKSWVKKEYQRVH ASVRKLV LR+LL SADGQEY+LNPPFR+NLQRAL ASDKTPWQG+VPL+ADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRS PPARVVKFMEESGLMR V GALRITDKG YEFMLKE HVQAWMVVHALINGYGRTQPGCRD+LLAFLFQLSYCKVGDAYPL ALT TQR+LAQDFVELGLLFKRKAKS RFYPTSIAVNLIFGS + GGG AQ+ Q AG + V
Sbjct: 19 MSLNVFDYLERLPPDALDKLYGAAPPAAQGQGGRSHGQWTCRALLQSLPQLAKQHVMRLLFVEGPVGKGMLKSWVKKEYQRVHAASVRKLVSLRVLLPSADGQEYQLNPPFRENLQRALCASDKTPWQGDVPLSADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSTPPARVVKFMEESGLMRPVRGGGALRITDKGQEEAWNCSRGARGGSFLCLRGGVGRGGARVLSTSSMLEGAVYPRRTGLYEFMLKEAHVQAWMVVHALINGYGRTQPGCRDELLAFLFQLSYCKVGDAYPLGALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGSSPSGDAGGAGGGGAQRKPQPAGGLGV 387
BLAST of mRNA_D-herbacea_F_contig100.254.1 vs. uniprot
Match: A0A836C856_9STRA (General transcription factor IIH subunit 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C856_9STRA) HSP 1 Score: 358 bits (920), Expect = 1.150e-112 Identity = 215/481 (44.70%), Postives = 282/481 (58.63%), Query Frame = 3
Query: 321 DGFVDKGMLKSWVKKEYQRVHTASVRKLVGLRLLLQS-------ADGQEYR-----LNPPFRDNLQRALSASDKTPWQGN--VPLTADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSIPPARVVKFMEESGLMRAVSRSGALRITDKGYEFMLKETHVQAWMVVHALINGYGRTQPGCRDDLLAFLFQLSYC------------------------------------------KVGDAYPLEALTPTQRELAQDFVELGLLFKRKAKSKRFYPTSIAVNLIFGSVLADGGGRAQQQTAGSVPVGKKEDDTTIQIIVETNFQVVAYTRSKLHYAMLSLFLELRARLPNVIIGAITRESMRRALATGIKGRQVLDFLKWHAHPVVRRRSPVVPENIADQILLWERERDRMVQSEGVLLDVSNAHDESYRRIVEFANGVGGLLWHSPFGASADGYNRKKLIIVTPRAVGAVTEFVERTM 1595
DG + K +LK WV+ Y VH A+VR+L LR+L+++ A Q+ R LNPPFR NL +AL D PW+ + L D+ P+ AKIE +M +W+ VL+FLV SD G P+ V FM+++GLM RS L IT++GYEFML++ HVQAWM V +LI + RDDLL+FLF LSYC KV + YPL ALTP Q +LA+DF++LGLL++RK S+RFY T IAVNL+FG+ A+ RA Q A + + + + IIVETNFQVVAYT S LH AML+LFLELRARLPN++IG ITRES+R+AL TGIK Q+L+FLKWHAHP V R P++PENIADQI+LWERER R+ G LLD+ + ++ E+A +G LW + K+++IV AV V F + M
Sbjct: 22 DGAISKDLLKGWVRDAYTGVHRAAVRQLSALRVLVRAQELSGAAAAAQQQRRGMIALNPPFRKNLLQALLTPDVAPWKDDPRFALRPDKLTPSRAKIEGEMRRKWEAVLHFLVASDGAGAGPTPS-VRAFMQQAGLMARRGRSEQLVITNRGYEFMLRDIHVQAWMFVLSLIRSKS-SDAQARDDLLSFLFMLSYCTVSAALQPLEGHHNAQSVCAAPSLSCKPLPAAPSASVNRCSEKVCEDYPLLALTPAQAQLARDFIDLGLLYQRKPSSQRFYTTEIAVNLVFGAAAAEHPSRAVIQAADAS--AQLDLAPRMTIIVETNFQVVAYTTSDLHVAMLTLFLELRARLPNMVIGVITRESVRQALVTGIKASQILNFLKWHAHPNVINRRPMIPENIADQIILWERERTRVKYDAGTLLDLPFEGVHDFDKVAEYAEELGACLWAA---------REKRVLIVAAAAVNKVVAFADGLM 489
BLAST of mRNA_D-herbacea_F_contig100.254.1 vs. uniprot
Match: A0A024TBA0_9STRA (General transcription factor IIH subunit 4 n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TBA0_9STRA) HSP 1 Score: 333 bits (855), Expect = 2.810e-103 Identity = 197/461 (42.73%), Postives = 279/461 (60.52%), Query Frame = 3
Query: 162 NVFDYLGRLPPEALDKLYGQDAGQSDHGQWTCRALLQSLPQLAKQHVMRLLFVD-GFVDKGMLKSWVKKEYQRVHTASVRKLVGLRLLLQSADGQEYRLNPPFRDNLQRALSASDKTPWQ-GNVPLTADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSIPPARVVKFMEESGLMR-AVSRSGALRITDKGYEFMLKETHVQAWMVVHALINGYGRTQPGCRDDLLAFLFQLSYCKVGDAYPLEALTPTQRELAQDFVELGLLFKRKAKSKRFYPTSIAVNLIFGSVLADGGGR-------------AQQQTAGSVP-VGKKEDDTTIQIIVETNFQVVAYTRSKLHYAMLSLFLELRARLPNVIIGAITRESMRRALATGIKGRQVLDFLKWHAHPVVRRRSPVVPENIADQILLWERERDRMVQSEGVLLDVSNAHDESYRRIVEFANGVGGLLWH 1493
N F++LG LP ++D+LY QDA W C+A+ QSL LA+Q VMRLLF + + WV+ Q TA++ KL LR+L +Y LNP F++ L++ALS+ +PW+ G L A++ P V ++E +W VL+F+VGS + PPA V+ +E + LM+ + S S AL ITD GYEFMLK+ H Q W+ V + R D++L FLFQ+SYC++ + Y + LT Q++L D VELGLL++R AK+ RFY TS+AVNLIFG +L A + +P D+++ I+VETNF+V AYT+S LH AMLS+F+++ ARLPN+ +G +TRES+R AL+ GI Q+ DFL HAHP + SPV+PENIADQ+ LW+RER+R+ G L+DV+N E + +V+ A +G LLWH
Sbjct: 2 NAFEFLGSLPGGSVDRLY-QDA-------WACQAVFQSLSPLAQQIVMRLLFSNHATYAHDAILHWVQDAAQDKMTAAIEKLRHLRVLRVVQGSLDYVLNPVFQEQLKKALSSLGGSPWEAGRSKLPAEKPIPAV-ELELYARKRWDSVLHFMVGSTAV--AAPPATVIGILEHTKLMQPSKSDSRALHITDTGYEFMLKDIHAQTWIFVLEYMKDIDRKGILPADEMLQFLFQMSYCRMNEYYAVADLTRNQQQLLGDLVELGLLYRRGAKATRFYTTSLAVNLIFGGMLGQTRANMTMSQGLDHITNYAADPSKSRLPSASPARADSSLLIVVETNFKVYAYTQSSLHIAMLSVFVDIVARLPNLAVGFLTRESIRSALSNGISAEQIYDFLMQHAHPKMLGNSPVIPENIADQLYLWQRERNRIKFEPGELVDVAN---EDFDAVVKHAEDMGVLLWH 448
BLAST of mRNA_D-herbacea_F_contig100.254.1 vs. uniprot
Match: W4FDT1_9STRA (General transcription factor IIH subunit 4 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FDT1_9STRA) HSP 1 Score: 333 bits (854), Expect = 3.830e-103 Identity = 192/465 (41.29%), Postives = 276/465 (59.35%), Query Frame = 3
Query: 162 NVFDYLGRLPPEALDKLYGQDAGQSDHGQWTCRALLQSLPQLAKQHVMRLLFVD-GFVDKGMLKSWVKKEYQRVHTASVRKLVGLRLLLQSADGQEYRLNPPFRDNLQRALSASDKTPWQGNVPLTADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSIPPARVVKFMEESGLMR-AVSRSGALRITDKGYEFMLKETHVQAWMVVHALINGYGRTQPGCRDDLLAFLFQLSYCKVGDAYPLEALTPTQRELAQDFVELGLLFKRKAKSKRFYPTSIAVNLIFGSVLADGGGRAQQQTAGSVPVGKKED-------------------DTTIQIIVETNFQVVAYTRSKLHYAMLSLFLELRARLPNVIIGAITRESMRRALATGIKGRQVLDFLKWHAHPVVRRRSPVVPENIADQILLWERERDRMVQSEGVLLDVSNAHDESYRRIVEFANGVGGLLWH 1493
N F++LG LP ++D+LY QDA W C+A+ QS+ LA+Q VMRLLF + G + WV+ Q TA++ KL LR+L + EY LNP F+D L++ALS+ +PW+ P A++E+ +W VL+F+VGS + PP V+ +E +GLM+ + + + AL ITD GYEFMLK+ H Q W+ V + R +++L FLFQ+SYC++ + Y + LT Q++L D VELGLL++R AK+ RFY TS+AVNLIFG +L QT S+ + + D D + I+VETNF+V AYT+S LH AMLS+F+++ ARLPN+ +G +TRES+R AL+ GI Q+ DFL HAHP + SPV+PENIADQ+ LW+RER+R+ G L+D E + +++FA VG +LW+
Sbjct: 2 NAFEFLGSLPGGSVDRLY-QDA-------WACQAVFQSMSPLAQQIVMRLLFTNQGSYSHDAILQWVQDPAQVKMTAAIEKLRHLRVLRMAHGTAEYVLNPVFQDQLKKALSSLGGSPWEAGRHKLPSEKPIAAAELEQYARKRWDAVLHFMVGSTAV--AAPPPTVIGILEHTGLMQPSKTDARALHITDTGYEFMLKDIHAQTWIFVLEYMKDIDRKGILSAEEMLQFLFQMSYCRMNEYYAVADLTRHQQQLLGDLVELGLLYRRGAKATRFYTTSLAVNLIFGGMLG--------QTRSSITMSQGLDHLHRPSKSPHLPPPTAAAADAHLLIVVETNFKVYAYTQSSLHIAMLSVFVDIVARLPNLAVGFLTRESIRSALSNGISAEQIYDFLMQHAHPKMLGNSPVIPENIADQLYLWQRERNRIKFDAGELVD-GFVTTEDFDVVLKFAQDVGVMLWY 447
BLAST of mRNA_D-herbacea_F_contig100.254.1 vs. uniprot
Match: A0A6G0WGX7_9STRA (General transcription factor IIH subunit 4 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WGX7_9STRA) HSP 1 Score: 326 bits (836), Expect = 1.760e-100 Identity = 191/488 (39.14%), Postives = 277/488 (56.76%), Query Frame = 3
Query: 162 NVFDYLGRLPPEALDKLYGQDAGQSDHGQWTCRALLQSLPQLAKQHVMRLLFVDGFVDKGMLKSWVKKEYQRVHTASVRKLVGLRLLLQSADGQEYRLNPPFRDNLQRALSASDKTPWQGNVPLTADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSIPPARVVKFMEESGLMR-AVSRSGALRITDKGYEFMLKETHVQAWMVVHALINGYGRTQPGCRDDLLAFLFQLSYCKVGDAYPLEALTPTQRELAQDFVELGLLFKRKAKSKRFYPTSIAVNLIFGSV---------LADGGGRAQQQTAGSV---PVGKKEDDTTIQIIVETNFQVVAYTRSKLHYAMLSLFLELRARLPNVIIGAITRESMRRALATGIKGRQVLDFLKWHAHPVVRRRSPVVPENIADQILLWERERDRMVQSEGVLLDVSNAHDESYRRIVEFANGVGGLLWHSPFGASADGYNRKKLIIVTPRAVGAVTEFVE 1586
N F+YLG LP +LD+LY QD W C+A+ QS+ L++Q VMRLLF V K L W++ Q TA++ KL LR+L ++ LNP F++ L+ ALS+ +PW+ P A +E+ +W VL+F+VGS PP V+ +E + LM+ + + + AL ITD GYEFMLK+ H Q W+ V I R D++L F FQ+SYC++ + Y + LT Q++L D V+LGLL+++ +K+ RFY TS+AVNLIFG + + QQ + V P + + I+VETNF+V AYT S LH AMLS+F+++ ARLPN+ +G +TRES+R AL GI Q+ DFL HAHP + SPV+PENIADQ+ LW+RER+R+ G LLD E + +V++A + L+WH D + K +++T AV +F++
Sbjct: 2 NAFEYLGALPGTSLDRLY-QDP-------WACQAVFQSMNPLSQQIVMRLLFTTTHVSKDALMHWIQDSAQSKMTAAIEKLCHLRVLRPVQGTNKFGLNPAFQEKLKTALSSLGGSPWEAGRKNLPPEKPIAAADLEQYARKRWDAVLHFMVGSTAV--PAPPKEVIGILEHTRLMKPSETDARALHITDTGYEFMLKDIHAQTWIFVLNYIKDIDRKGILSADEMLQFFFQMSYCRMNEYYAVADLTRHQQQLLGDLVQLGLLYRKDSKATRFYTTSLAVNLIFGGMAGQTRTNITMVQSLEAVHQQASSQVVPRPFASTSSASHLLIVVETNFKVYAYTESTLHIAMLSVFVDIVARLPNLAVGYLTRESIRSALIHGISAEQIYDFLMQHAHPKMLANSPVIPENIADQLYLWQRERNRIKFDAGELLD-GFVTTEDFDSVVKYAQDLHVLMWH-------DAVHLK--LVITKAGGDAVRQFMQ 469
BLAST of mRNA_D-herbacea_F_contig100.254.1 vs. uniprot
Match: D0NRC9_PHYIT (General transcription factor IIH subunit 4 n=21 Tax=Phytophthora TaxID=4783 RepID=D0NRC9_PHYIT) HSP 1 Score: 325 bits (832), Expect = 9.850e-100 Identity = 198/468 (42.31%), Postives = 270/468 (57.69%), Query Frame = 3
Query: 162 NVFDYLGRLPPEALDKLYGQDAGQSDHGQWTCRALLQSLPQLAKQHVMRLLFVDGFVDKGMLKSWV------KKEYQRVHTASVRKLVGLRLLLQSADGQEYRLNPPFRDNLQRALSASDKTPWQ-GNVPLTADRSPPTVA-KIERQMHSQWQDVLYFLVGSDEEGRSIPPARVVKFMEESGLMRAVSR-SGALRITDKGYEFMLKETHVQAWMVVHALINGYGRTQPGCRDDLLAFLFQLSYCKVGDAYPLEALTPTQRELAQDFVELGLLFKRKAKSKRFYPTSIAVNLIFGSVLAD-----------GGGRA--QQQTAGSVPVGKKEDDTTIQIIVETNFQVVAYTRSKLHYAMLSLFLELRARLPNVIIGAITRESMRRALATGIKGRQVLDFLKWHAHPVVRRRSPVVPENIADQILLWERERDRMVQSEGVLLDVSNAHDESYRRIVEFANGVGGLLWHSP 1499
+ FD+L LPP L++LY QD W C+A+ Q+LP LA+Q VMRLL + V + +L+ WV K A+++KL GLR+ +Q G Y+ +P F+ L ALS +PW+ G + L D A +ER ++W VL+++VGS PP VV + + L++A S AL ITD GYEFMLK+ HVQ W+ + I T ++D+L FLFQ+SYC+ G Y + LT TQR L DF++ GLLF+++ S RFY TS+AVNLIFG G RA + Q A + + ++VETNF++ AYT S LH AMLS+F+++ ARLPN+ IG ITRES+R AL GI +Q+ DFL HAHP +RR SPV+PENIADQI LWERER+R+ EG+L D N E Y + ++A G+ L W P
Sbjct: 2 DAFDFLETLPPATLERLY-QDP-------WACQAIFQALPSLAQQFVMRLLPTNSAVPRDLLEQWVVPIPGETKRMPPQFNAALQKLEGLRVFVQQDGG--YKPHPTFQKQLMYALSNLGGSPWERGRLHLPRDPENTFAAVDLERYARARWDLVLHYMVGSTAVQE--PPQSVVDILLRTKLLQASGADSRALHITDTGYEFMLKDIHVQMWIFMLEYIRTLDNTGTLKQEDILQFLFQISYCQTGGYYAVADLTETQRLLLGDFIDFGLLFRKRQNSDRFYTTSLAVNLIFGGSTGQKRSHVSLTSSFAGVRAGMKSQVADPRQAPTVDHGARLLVVVETNFKIYAYTSSTLHVAMLSVFVDIVARLPNLAIGFITRESLRSALIHGISAQQIYDFLMKHAHPKMRRNSPVIPENIADQIYLWERERNRVQFLEGILFDGFNTK-EDYESVRDYAKGLMVLTWSDP 456
BLAST of mRNA_D-herbacea_F_contig100.254.1 vs. uniprot
Match: A0A485KU14_9STRA (General transcription factor IIH subunit 4 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KU14_9STRA) HSP 1 Score: 320 bits (819), Expect = 6.080e-98 Identity = 189/461 (41.00%), Postives = 266/461 (57.70%), Query Frame = 3
Query: 162 NVFDYLGRLPPEALDKLYGQDAGQSDHGQWTCRALLQSLPQLAKQHVMRLLFVD--GFVDKGMLKSWVKKEYQRVHTASVRKLVGLRLLLQSADGQEYRLNPPFRDNLQRALSASDKTPWQGNVPLTADRSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSIPPARVVKFMEESGLMRAVSRSG-ALRITDKGYEFMLKETHVQAWMVVHALINGYGRTQPGCRDDLLAFLFQLSYCKVGDAYPLEALTPTQRELAQDFVELGLLFKRKAKSKRFYPTSIAVNLIFGSVLADG--------------GGRAQQQTAGSVPVGKKEDDTTIQIIVETNFQVVAYTRSKLHYAMLSLFLELRARLPNVIIGAITRESMRRALATGIKGRQVLDFLKWHAHPVVRRRSPVVPENIADQILLWERERDRMVQSEGVLLDVSNAHDESYRRIVEFANGVGGLLWH 1493
N F++L LP ++D+LY QDA W C+A+ QS+ L +Q VMRLLF + + +L+ WV++ Q+ ++ KL LR+L +E+ LNP F++ L++ALS+ +PW+ A P + +E+ +W VL+F+VGS PP V+ +E + LM+ S AL ITD GYEFMLK+ H Q W+ V I R +++L FLFQ+SYC++ + Y + LT Q++L D VELGLLF++ K+ RFY TS+AVNLIFG VL QQ T G+VP + I+VETNF+V AYT S LH AMLS+F+++ ARLPN+ +G +TRES+R AL GI Q+ DFL HAHP + SPV+PENIADQ+ LW+RER+R+ G LLD E + +V +A + LLWH
Sbjct: 2 NAFEFLATLPAASVDRLY-QDA-------WACQAVFQSMEPLGQQIVMRLLFTSQVSYSQESLLE-WVQEPAQQKMIHAIEKLSHLRVLRVVKGQREFVLNPVFQEQLKKALSSLGGSPWEAGRQKLAAEPPISALDLEQYARKRWDAVLHFMVGSTAV--PAPPPTVIGILEHTRLMQPSSSDARALHITDTGYEFMLKDVHAQTWIFVLEYIKDIDRRGILSAEEMLQFLFQMSYCRMNEYYAIGDLTRNQQQLLGDLVELGLLFRKGTKATRFYTTSLAVNLIFGGVLGQTRTSISMVQSLEQVHSASGQQLTKGAVP-RPVAVAAHLLIVVETNFKVYAYTESTLHIAMLSVFVDIVARLPNLAVGYLTRESIRSALIHGISAEQIYDFLMQHAHPKMLANSPVIPENIADQLYLWQRERNRIKFDAGELLD-GFVTTEDFDTVVNYAQDLDVLLWH 449
BLAST of mRNA_D-herbacea_F_contig100.254.1 vs. uniprot
Match: A0A3M6VGH3_9STRA (General transcription factor IIH subunit 4 n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VGH3_9STRA) HSP 1 Score: 317 bits (813), Expect = 6.280e-97 Identity = 197/469 (42.00%), Postives = 269/469 (57.36%), Query Frame = 3
Query: 162 NVFDYLGRLPPEALDKLYGQDAGQSDHGQWTCRALLQSLPQLAKQHVMRLLFVDGFVDKGMLKSWVKKEYQRV-------HTASVRKLVGLRLLLQSADGQEYRLNPPFRDNLQRALSASDKTPWQ-GNVPLTAD-RSPPTVAKIERQMHSQWQDVLYFLVGSDEEGRSIPPARVVKFMEESGLMRAVSR-SGALRITDKGYEFMLKETHVQAWMVVHALINGYGRTQPGCRDDLLAFLFQLSYCKVGDAYPLEALTPTQRELAQDFVELGLLFKRKAKSKRFYPTSIAVNLIFGSVLAD-----------GGGRA--QQQTAGSVPVGKKEDDTTIQIIVETNFQVVAYTRSKLHYAMLSLFLELRARLPNVIIGAITRESMRRALATGIKGRQVLDFLKWHAHPVVRRRSPVVPENIADQILLWERERDRMVQSEGVLLDVSNAHDESYRRIVEFANGVGGLLWHSP 1499
+ FD+L LPP L++LY W C+A+ Q+LP LA+Q V+RLL + V +L+ WV E V H A + KL GLR+ LQ DG YR +P F+ L ALS +PW+ G + L D + T A +ER ++W VL+++VGS PP VV + + L++A S AL ITD GYEFMLK+ HVQ W+ + I T ++D+L FLFQ+SYC+ G+ Y + LT TQR L DF++ GLL++++ S RFY TS+AVNLIFG G RA + Q A + + ++VETNF++ AYT S LH AMLS+F+++ ARLPN+ IG ITRES+R AL GI +Q+ DFL HAHP +R +PV+PENIADQI LWERER+R+ G+L D N E Y + ++A G+ L W P
Sbjct: 2 DAFDFLETLPPATLERLYEDP--------WACQAIFQALPPLAQQFVIRLLPTNAAVPCELLEQWVVPEPGEVKRMPPQFHVA-LHKLKGLRVFLQQ-DGS-YRSHPIFQKQLMYALSNLGGSPWESGRLCLPKDLENMFTTADLERYARARWDAVLHYMVGSTAVQE--PPQSVVDILIRTKLLQASGADSRALHITDTGYEFMLKDIHVQMWIFLLEYIRTLDNTGTLKQEDILQFLFQISYCQTGEYYAVADLTETQRLLLGDFIDFGLLYRKRTNSDRFYTTSLAVNLIFGGSTGQKRNHVSLSSSFAGVRAGMKSQMANPRQTPALDRGAQLLVVVETNFKIYAYTTSTLHVAMLSVFVDIVARLPNLAIGFITRESLRSALIHGISAQQIYDFLIKHAHPKMRHNTPVIPENIADQIYLWERERNRVQFMAGILFDGFNTK-EDYESVRDYAKGLKVLTWSDP 456
BLAST of mRNA_D-herbacea_F_contig100.254.1 vs. uniprot
Match: A0A0P1AW06_PLAHL (General transcription factor IIH subunit 4 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AW06_PLAHL) HSP 1 Score: 316 bits (810), Expect = 1.960e-96 Identity = 196/470 (41.70%), Postives = 271/470 (57.66%), Query Frame = 3
Query: 162 NVFDYLGRLPPEALDKLYGQDAGQSDHGQWTCRALLQSLPQLAKQHVMRLLFVDGFVDKGMLKSWV------KKEYQRVHTASVRKLVGLRLLLQSADGQEYRLNPPFRDNLQRALSASDKTPWQ-GNVPLTADRSPPTVAK-IERQMHSQWQDVLYFLVGSDEEGRSIPPARVVKFMEESGLMRAVSR-SGALRITDKGYEFMLKETHVQAWMVVHALINGYGRTQPGCRDDLLAFLFQLSYCKVGDAYPLEALTPTQRELAQDFVELGLLFKRKAKSKRFYPTSIAVNLIFGSVLADGGGRAQQQTAGS---VPVGKKEDDTT------------IQIIVETNFQVVAYTRSKLHYAMLSLFLELRARLPNVIIGAITRESMRRALATGIKGRQVLDFLKWHAHPVVRRRSPVVPENIADQILLWERERDRMVQSEGVLLDVSNAHDESYRRIVEFANGVGGLLWHSP 1499
+ F++L LP L++LY QD W C+A+ Q+LP LA+Q VMRLL + V + +L+ WV E A++ KL GLR+ +Q G YR +P F+ L ALS +PW+ G + L D AK +ER ++W VL+++VGS PP VV + + L+++ S AL ITD GYEFMLK+ HVQ W + I T ++D+L FLFQLSYC+ G Y + LT TQ+ L DF++ GLLF++++ S RFY TS+AVNLIFG + G R+ + S V G K T + ++VETNF++ AYT S LH AMLS+F+++ ARLPN+ IG ITRES+R AL GI +Q+ DFL HAHP +R+ +P+VPENIADQI LWERER+R+ EG+L D N E Y + ++A + L W P
Sbjct: 2 DAFEFLETLPAATLERLY-QDP-------WACQAVFQALPPLAQQFVMRLLPTNTSVPRDLLEKWVVPLPGDSHEMPPQFNAALHKLDGLRVFIQENGG--YRPHPLFQKQLMYALSNLGGSPWERGRLRLPKDPENTFAAKDLERYARARWDSVLHYMVGSTAVQE--PPQSVVDILLRTKLLQSSEADSRALHITDTGYEFMLKDIHVQMWTFMLEYIRTLDNTGTLKQEDILQFLFQLSYCQTGGYYAVADLTQTQQLLLGDFIDFGLLFRKRSNSDRFYTTSLAVNLIFGG--SKGQERSHVRLTSSFAGVRAGVKSQVTNPRLTPVLDHEAQLLVVVETNFKIYAYTSSTLHVAMLSVFVDIVARLPNLAIGFITRESLRSALIHGISAQQIYDFLVKHAHPKMRQNTPIVPENIADQIYLWERERNRVQFIEGILFDGFNTK-EDYESVCDYARNLDVLTWADP 456 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig100.254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig100.254.1 >prot_D-herbacea_F_contig100.254.1 ID=prot_D-herbacea_F_contig100.254.1|Name=mRNA_D-herbacea_F_contig100.254.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=520bp MDVDGPHALTMATQASIQPDVNAKQAPGRDENDVLPSGMNTNVFDYLGRLback to top mRNA from alignment at D-herbacea_F_contig100:804585..813544+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig100.254.1 ID=mRNA_D-herbacea_F_contig100.254.1|Name=mRNA_D-herbacea_F_contig100.254.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=8960bp|location=Sequence derived from alignment at D-herbacea_F_contig100:804585..813544+ (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig100:804585..813544+ >mRNA_D-herbacea_F_contig100.254.1 ID=mRNA_D-herbacea_F_contig100.254.1|Name=mRNA_D-herbacea_F_contig100.254.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=3120bp|location=Sequence derived from alignment at D-herbacea_F_contig100:804585..813544+ (Desmarestia herbacea DmunF female)back to top |