mRNA_D-herbacea_F_contig100.253.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig100.253.1
Unique NamemRNA_D-herbacea_F_contig100.253.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
[Close]
BLAST of mRNA_D-herbacea_F_contig100.253.1 vs. uniprot
Match: D7FHY6_ECTSI (Phosphatidylinositol 3-kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY6_ECTSI)

HSP 1 Score: 414 bits (1064), Expect = 8.300e-134
Identity = 213/302 (70.53%), Postives = 240/302 (79.47%), Query Frame = 2 
Query:   80 MTSLDYKEDARDLHAFKELRFFLSHAVPLEIRCSISRLELPLVADYLLGG------TFNDTDQQRFPDRDQQRGHQQQQQ-------SLGCGE--EAMAAIVRRIVSEPELVATCQIFCDGQPMHGVPVSSHTPSRYDPRRHAVVWEDSMCFPVRYRDLDRNSQLVVVLRGAKNRLVGVASMRFFDVNGSLAMGLQKRPFQFTSKLPFSWDPASRPSGREPGEDGVWCGVADGNARDEQCFDDSVPKEDWGFRLEQMREEYKLFAMDRADWLDPVSLSRVDRLVAALADPEELRKHRAYQTE 940
            M+SLDYKEDARDLHAFKELRFFLSH+VPLEIRC ++RLELPLVADYLLGG         D D  +           QQ+Q       + G  +  E +A IVRRIV+EPELVATCQ+F DGQPMH V +SSHTPSRYDPR+HA+VW+DSMCFPVRYRDLDRNSQLVVVLRGAK+RLVGVASMRFFD NGSL MGLQKRPF FT + PFSWDPA+ PSGREPG+DGVWCG   G+       D  + K+DWGF LE+MRE+Y+L AMDRADWLDPVSLSRVDRLVAALADP+ELRKHRAYQT+
Sbjct:    1 MSSLDYKEDARDLHAFKELRFFLSHSVPLEIRCGVARLELPLVADYLLGGGGDGGIAGGDADYNQXXXXXXXXXXGQQKQHGLAPEVTAGTADDGEEIARIVRRIVAEPELVATCQLFSDGQPMHKVAMSSHTPSRYDPRQHAIVWDDSMCFPVRYRDLDRNSQLVVVLRGAKDRLVGVASMRFFDANGSLNMGLQKRPFLFTDRAPFSWDPAAPPSGREPGQDGVWCGSGGGDXXXXXXXDGILSKDDWGFALERMREKYRLRAMDRADWLDPVSLSRVDRLVAALADPDELRKHRAYQTD 302
[Close]
BLAST of mRNA_D-herbacea_F_contig100.253.1 vs. uniprot
Match: A0A6H5KIS1_9PHAE (C2 PI3K-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIS1_9PHAE)

HSP 1 Score: 324 bits (831), Expect = 2.110e-108
Identity = 166/252 (65.87%), Postives = 195/252 (77.38%), Query Frame = 2 
Query:   80 MTSLDYKEDARDLHAFKELRFFLSHAVPLEIRCSISRLELPLVADYLLGGT---------FNDTDQQRFPDRDQQRGHQQQ-----QQSLGCGE--EAMAAIVRRIVSEPELVATCQIFCDGQPMHGVPVSSHTPSRYDPRRHAVVWEDSMCFPVRYRDLDRNSQLVVVLRGAKNRLVGVASMRFFDVNGSLAMGLQKRPFQFTSKLPFSWDPASRPSGREPGEDGVWCGVADGNARDEQCFDDSVPKEDWG 787
            M+SLDYKEDARDLHAFKELRFFLSH+VPLEIRC ++RLELPLVADYLLG           + + +QQ    + + RG Q++     + + G  +  E +A IVRRIV+EPELVATCQ+F DGQPMH + +SSHTPSRYDPR+HA+VW+DSMCFPVRYRDLDRNSQLVVVLRGAK+RLVGVASMRFFD NGSL MGLQKRPF FT + PFSWDPA+ PSGREPG+DGVWCG   G+       D  +  +DWG
Sbjct:    1 MSSLDYKEDARDLHAFKELRFFLSHSVPLEIRCGVARLELPLVADYLLGSDGGIAGGDADYGNNNQQSRQQQHKTRGQQKKHGLVPEVAAGTADDGEEIARIVRRIVAEPELVATCQLFSDGQPMHKIAMSSHTPSRYDPRQHAIVWDDSMCFPVRYRDLDRNSQLVVVLRGAKDRLVGVASMRFFDANGSLNMGLQKRPFLFTDRAPFSWDPAAPPSGREPGQDGVWCGSGGGDDGGNGDRDGILSTDDWG 252
[Close]
BLAST of mRNA_D-herbacea_F_contig100.253.1 vs. uniprot
Match: A0A6H5K341_9PHAE (Phosphatidylinositol 3-kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K341_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.750e-14
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 2 
Query:  803 MREEYKLFAMDRADWLDPVSLSRVDRLVAALADPEELRKHRAYQTE 940
            MRE+Y+L AMDRADWLDP SLSRVDRLVAALADP+ELRKHRAYQT+
Sbjct:    1 MREKYRLRAMDRADWLDPASLSRVDRLVAALADPDELRKHRAYQTD 46
[Close]
BLAST of mRNA_D-herbacea_F_contig100.253.1 vs. uniprot
Match: A0A0W8CJK0_PHYNI (Phosphatidylinositol 3-kinase n=5 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CJK0_PHYNI)

HSP 1 Score: 77.4 bits (189), Expect = 4.890e-12
Identity = 69/255 (27.06%), Postives = 115/255 (45.10%), Query Frame = 2 
Query:  128 KELRFFLSHAVPLEIRCSISRLELPLVADYLLGGTFNDTDQQRFPDRDQQRGHQQQQQSLGCGEEAMAAIVRRIVSEP--ELVATCQIFCDGQPMHGVPVSSHTPSRYDPRRHAVVWEDSMCFPVRYRDLDRNSQLVVVLRGAKNRLVGVASMRFFDVNGSLAMGLQKRPFQFTSKLPFSWDPASRPSGREPGE-DGVWCGVADGNARDEQCFDDSVPKEDWGFRLEQMREEYKLFAMDRADWLDPVSLSRVDRL 883
            KE R++LS  V   I   IS +EL       + G   DT ++   +            +   G E +A     + + P  E+  T Q+F DG P+H + +SS +P++       + W + + FPVRYRDL RNS L + + G     +G +++ FF   G L  G+Q        ++    +  S P+   P E D  W          ++CF           RL+++RE+Y+   + R +W+D V+  R+ R+
Sbjct:    6 KEYRYYLSSGVSTGISVKISLVELAPALGCSVSG---DTPKRAVSE------------APLAGLEQLAGTSSEVRNSPVSEIFLTAQVFSDGLPLHPMVISSKSPTKCS--NSTIYWNEWISFPVRYRDLSRNSLLAITIWGVGWVPIGGSTISFFTKQGVLRDGVQ------CLRIWEGREADSSPNTTTPSEIDEEWVR--------QECF-----------RLDKLREKYERKEIARNEWMDSVTDRRIARI 218
[Close]
BLAST of mRNA_D-herbacea_F_contig100.253.1 vs. uniprot
Match: H3H3A8_PHYRM (Phosphatidylinositol 3-kinase n=23 Tax=Peronosporaceae TaxID=4777 RepID=H3H3A8_PHYRM)

HSP 1 Score: 76.3 bits (186), Expect = 1.200e-11
Identity = 70/255 (27.45%), Postives = 112/255 (43.92%), Query Frame = 2 
Query:  128 KELRFFLSHAVPLEIRCSISRLELPLVADYLLGGTFNDTDQQRFPDRDQQRGHQQQQQSLGCGEEAMAAIVRRIVSEP--ELVATCQIFCDGQPMHGVPVSSHTPSRYDPRRHAVVWEDSMCFPVRYRDLDRNSQLVVVLRGAKNRLVGVASMRFFDVNGSLAMGLQKRPFQFTSKLPFSWDPASRPSGREPGE-DGVWCGVADGNARDEQCFDDSVPKEDWGFRLEQMREEYKLFAMDRADWLDPVSLSRVDRL 883
            KE R++LS  V   I   IS +EL       + G             D  R    Q      G E +A     + + P  E+  T Q+F DG P+H + +SS +P++       + W + + FPVRYRDL RNS L + + G     +G +++ FF   G L  G+Q        ++    +  S P+   P E D  W          ++CF           RL+++RE+Y+   + R +W+D V+  R+ R+
Sbjct:    6 KEYRYYLSSGVSTGISVKISLVELAPALGCSVSG-------------DAPRRAVSQ-----AGLEQLAGSSSEVRNSPVSEIFLTAQVFSDGLPLHPMVISSKSPTKCS--NSTIYWNEWISFPVRYRDLSRNSLLAITIWGVGWVPIGGSTISFFSKQGVLRDGVQ------CLRIWEGREADSSPTTTTPSEIDEEWVR--------QECF-----------RLDKLREKYERKEIARNEWMDSVTDRRIARI 215
[Close]
BLAST of mRNA_D-herbacea_F_contig100.253.1 vs. uniprot
Match: K3X9V2_GLOUD (Phosphatidylinositol 3-kinase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X9V2_GLOUD)

HSP 1 Score: 71.6 bits (174), Expect = 4.120e-10
Identity = 72/271 (26.57%), Postives = 116/271 (42.80%), Query Frame = 2 
Query:  128 KELRFFLSHAVPLEIRCSISRLELPLVADYLLG---GTFNDTDQQRFPDRDQQRGHQQQQ---------QSLGCGEEAMAAIVRRIVSEPELVATCQIFCDGQPMHGVPVSSHTPSRYDPRRHAVVWEDSMCFPVRYRDLDRNSQLVVVLRGAKNRLVGVASMRFFDVNGSLAMGLQKRPFQFTSKLPFSWDPASRPSGREPGEDGVWCGVADGNARDEQCFDDSVPKEDWGFRLEQMREEYKLFAMDRADWLDPVSLSRVDRLVAALADP 904
            KE R++LS  V   I   +S LEL       +G   G+ + +D  +    D  R    +          +S G  + A  +   R  +  E   + QIF DG PMH + +SS  P++      ++ W + + FPVRYRDL RNS L + + G     +G  ++ FF  +G L  G Q        ++    +  S P    P E             DE    +S       FRL+++RE+Y+   +   +W+D V+  R+ R++     P
Sbjct:    6 KEYRYYLSSGVSASISIKVSFLELAPAIGLGVGEINGSASTSDGMQHKAVDHGRYATNKSAVERAPSAFKSHGLEQLAGTSSELRNSTIKEFFISAQIFSDGLPMHPMAISSKAPTKCS--ESSIYWNEWLSFPVRYRDLSRNSLLAITIWGVGWVPIGGTTISFFTKHGVLRDGNQ------CLRIWPGVEADSSPHTTTPSE-----------IHDEWAKQES-------FRLDKLREKYERKEITHNEWMDGVTDRRIARILRGSEPP 250
[Close]
BLAST of mRNA_D-herbacea_F_contig100.253.1 vs. uniprot
Match: A0A2P4X5L0_9STRA (Phosphatidyl inositol kinase (PIK-A) (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X5L0_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 8.420e-10
Identity = 51/167 (30.54%), Postives = 76/167 (45.51%), Query Frame = 2 
Query:  128 KELRFFLSHAVPLEIRCSISRLELPLVADYLLGGTFNDTDQQRFPDRDQQRGHQQQQQSLGCGEEAMAAIVRRIVSEP--ELVATCQIFCDGQPMHGVPVSSHTPSRYDPRRHAVVWEDSMCFPVRYRDLDRNSQLVVVLRGAKNRLVGVASMRFFDVNGSLAMGLQ 622
            KE R++LS  V   I   IS +EL       + G          P R    G          G E +A     + + P  E+  T Q+F DG P+H + +SS +P++       + W + + FPVRYRDL RNS L + + G     +G +++ FF   G L  G+Q
Sbjct:    6 KEYRYYLSSGVSTGISVKISLVELAPALGCSVSGDA--------PRRAVSEGPL-------AGLEQLAGTSSEVRNSPVSEIFLTAQVFSDGLPLHPMVISSKSPTKCS--NSTIYWNEWISFPVRYRDLSRNSLLAITIWGVGWVPIGGSTISFFSKQGVLRDGVQ 155
[Close]
BLAST of mRNA_D-herbacea_F_contig100.253.1 vs. uniprot
Match: A0A5D6YI39_9STRA (Phosphatidylinositol 3-kinase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YI39_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 5.620e-9
Identity = 58/199 (29.15%), Postives = 90/199 (45.23%), Query Frame = 2 
Query:  302 SLGCGEEAMAAIVRRIVSEPELVATCQIFCDGQPMHGVPVSSHTPSRYDPRRHAVVWEDSMCFPVRYRDLDRNSQLVVVLRGAKNRLVGVASMRFFDVNGSLAMGLQKRPFQFTSKLPFSWDPASRPSGREPGEDGVWCGV-ADGNARDEQCFDDSVPKEDW----GFRLEQMREEYKLFAMDRADWLDPVSLSRVDRL 883
            S G  + A++A   R  +  E   + QIF DGQP+H + +SS  P++      +V W + + FPVRYRDL RNS L + + G     VG +++ FF   G L  G Q                             VW GV AD +         S   ++W      RL+++RE++    + R +W+D V+  R+ R+
Sbjct:   69 SHGLQQLAVSASELRNSTINEFFISAQIFSDGQPLHPMVISSKGPTKCS--ESSVYWNEWLSFPVRYRDLSRNSLLAITIWGVGWVPVGGSTISFFTKQGVLRDGNQCLR--------------------------VWPGVEADSSTH---TATPSEVDDEWQRLESIRLDKLREKFDRKEIARNEWMDGVTDRRIARI 236
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig100.253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FHY6_ECTSI8.300e-13470.53Phosphatidylinositol 3-kinase n=1 Tax=Ectocarpus s... [more]
A0A6H5KIS1_9PHAE2.110e-10865.87C2 PI3K-type domain-containing protein n=1 Tax=Ect... [more]
A0A6H5K341_9PHAE1.750e-1486.96Phosphatidylinositol 3-kinase n=1 Tax=Ectocarpus s... [more]
A0A0W8CJK0_PHYNI4.890e-1227.06Phosphatidylinositol 3-kinase n=5 Tax=Phytophthora... [more]
H3H3A8_PHYRM1.200e-1127.45Phosphatidylinositol 3-kinase n=23 Tax=Peronospora... [more]
K3X9V2_GLOUD4.120e-1026.57Phosphatidylinositol 3-kinase n=1 Tax=Globisporang... [more]
A0A2P4X5L0_9STRA8.420e-1030.54Phosphatidyl inositol kinase (PIK-A) (Fragment) n=... [more]
A0A5D6YI39_9STRA5.620e-929.15Phosphatidylinositol 3-kinase n=1 Tax=Pythium bras... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig100contigD-herbacea_F_contig100:799406..804204 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score418.7
Seed ortholog evalue2.2e-114
Seed eggNOG ortholog2880.D7FHY6
KEGG rclassRC00002,RC00078
KEGG koko:K00914
KEGG ReactionR03362
KEGG Pathwayko00562,ko01100,ko04070,ko04136,ko04138,ko04140,ko04145,ko04371,ko05152,ko05167,map00562,map01100,map04070,map04136,map04138,map04140,map04145,map04371,map05152,map05167
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phosphatidylinositol kinase activity
EggNOG OGsCOG5032@1,KOG0906@2759
EC2.7.1.137
COG Functional cat.BDLTU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Exons4
Model size940
Cds size861
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig100.253.1prot_D-herbacea_F_contig100.253.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig100 799406..804125 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927417.806327-CDS-D-herbacea_F_contig100:799405..7995431622927417.806327-CDS-D-herbacea_F_contig100:799405..799543Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 799406..799543 -
1690790160.0612185-CDS-D-herbacea_F_contig100:799405..7995431690790160.0612185-CDS-D-herbacea_F_contig100:799405..799543Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 799406..799543 -
1622927417.8149016-CDS-D-herbacea_F_contig100:801324..8015971622927417.8149016-CDS-D-herbacea_F_contig100:801324..801597Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 801325..801597 -
1690790160.0722408-CDS-D-herbacea_F_contig100:801324..8015971690790160.0722408-CDS-D-herbacea_F_contig100:801324..801597Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 801325..801597 -
1622927417.8279648-CDS-D-herbacea_F_contig100:802018..8021241622927417.8279648-CDS-D-herbacea_F_contig100:802018..802124Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 802019..802124 -
1690790160.0804296-CDS-D-herbacea_F_contig100:802018..8021241690790160.0804296-CDS-D-herbacea_F_contig100:802018..802124Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 802019..802124 -
1622927417.8388772-CDS-D-herbacea_F_contig100:803781..8041251622927417.8388772-CDS-D-herbacea_F_contig100:803781..804125Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 803782..804125 -
1690790160.088895-CDS-D-herbacea_F_contig100:803781..8041251690790160.088895-CDS-D-herbacea_F_contig100:803781..804125Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 803782..804125 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927417.8508403-UTR-D-herbacea_F_contig100:804125..8042041622927417.8508403-UTR-D-herbacea_F_contig100:804125..804204Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig100 804126..804204 -
1690790160.09738-UTR-D-herbacea_F_contig100:804125..8042041690790160.09738-UTR-D-herbacea_F_contig100:804125..804204Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig100 804126..804204 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig100.253.1

>prot_D-herbacea_F_contig100.253.1 ID=prot_D-herbacea_F_contig100.253.1|Name=mRNA_D-herbacea_F_contig100.253.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=287bp
MTSLDYKEDARDLHAFKELRFFLSHAVPLEIRCSISRLELPLVADYLLGG
TFNDTDQQRFPDRDQQRGHQQQQQSLGCGEEAMAAIVRRIVSEPELVATC
QIFCDGQPMHGVPVSSHTPSRYDPRRHAVVWEDSMCFPVRYRDLDRNSQL
VVVLRGAKNRLVGVASMRFFDVNGSLAMGLQKRPFQFTSKLPFSWDPASR
PSGREPGEDGVWCGVADGNARDEQCFDDSVPKEDWGFRLEQMREEYKLFA
MDRADWLDPVSLSRVDRLVAALADPEELRKHRAYQTE
back to top

mRNA from alignment at D-herbacea_F_contig100:799406..804204-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig100.253.1 ID=mRNA_D-herbacea_F_contig100.253.1|Name=mRNA_D-herbacea_F_contig100.253.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=4799bp|location=Sequence derived from alignment at D-herbacea_F_contig100:799406..804204- (Desmarestia herbacea DmunF female)
GTGGAACACACAGTCTTCATCTCACTCACTAATTACGGCGGGGTCGTCTG
AAAACATAAAATAATAGCAAGAGAGCAAGATGACAAGCCTTGACTATAAG
GAGGACGCTAGAGATCTGCACGCCTTCAAGGAGCTGCGTTTCTTTCTCAG
CCATGCCGTTCCCCTCGAGATACGCTGCAGCATATCGCGCCTCGAGCTTC
CTCTTGTTGCGGACTATCTGTTGGGCGGTACTTTCAACGATACTGACCAA
CAGCGATTCCCTGACCGGGATCAACAGCGGGGGCATCAACAACAGCAGCA
AAGTCTTGGTTGCGGAGAGGAAGCAATGGCGGCTATTGTGAGACGTATCG
TTTCCGAGCCGGAGCTGGTTGCCACCTGCCAGATTTTCTGCGACGGACAG
CCGATGCACGGTGTGCCTGTGAGGTGTGTGTTGCATAGGCCAGAGAGGAT
GAAGAGAAGGCATCGCGTCTGAGTGGCATTGTTTGGTTGACGTGTGTGTT
TGGTGTCTACGCAAGCCAGTTTAAAATGTCGGGGTACGAGTAAAGCGAAG
GAATTCGAACAATGTTCAACTACGAGTACGTACCACTATAGATACGATCT
GCCACACCTGTTTTCATTTGCTACGAGTACACAGCACAGCACGGGGCTTC
TTTTGTAGCCGGAGCGACATCAAGCATGGCAGACAATACAGCACATCAGT
TAAAGTAGTATTAATAGTAGACTTAATAGTGCAGTAACTAGTATGATATC
AGTAGCACAACAGACAGTAGCAGTACAGTAGTCAGTAGTAGAGTAAAAAA
CCGCGGCATACGCCCGAGGTTTGCAAGTGTTTTACTCCAAAACCTCCAAA
GTCAACCCCGACCCCCTACTCATACCCCAACCCAACTCCAACACAGAGCA
CCAACACCGACCCCAACCCCTTACTCTAAAACGCCCAACCTCCCCTACTC
TTACCCCAGCACAACTCTATGCTCAACTCCAACCCCAGCACCAACCGCTG
CCCCTACCCAACTACGCGTGCGCATGGTTTCCAACTTTTTACTCCAAAAT
GTCCAAGCTCAACTCCGACCGCAACCCCTACTCATACCCCAACCCAACCC
AACTCCAATATCAACCCCAACCCCAACCCCTTACTCCAAAACATCCAACC
TCCCCTAGCCCATCTCCAACTCCAACCCCAGCACCAACCCTTACCCTTAC
CCCTACTCAACTACGCGTGCGTATGGTTTCCAACGTGATAATGTGAAAAC
TCCAACCCCAACGCTGACTCCAACCCCTACTCATATACCCCAACCCGACT
CTAACGTCAACTCTAACCCCAACCCCTTACTCCAAAGCCTCCAACCTCCC
CTACTTCTACCCCAACCCAATTCCAACTCGTATGATATGGAAACGTCTTA
TGATCAATCAGTGGGAACCTTGTTCGTTTCTTGGGCTGCCCCAGCTGTGT
GTGGTAGCCGTCCACGACTCCGCCGTCACGGCCGCACCTTGCTGGGTCGC
CATGCAGACCTCTTCAGCGCCTCCTTGCGATGTGGCCAGAAAGCGGCGAT
TTGTGCTTGTGGTGGAGGCCGGCGACTATATCGCCAGATGACGCCATCTC
ATTTGGCGAAGAAAGTGTTCCGCATTGCGTGTTTCTATGACACCTTATCT
GAGGACCGATAAACTCCGCGTGACCAAAGTATCTCGCAGTAAGGATGACG
ATTATCCCTTGGCCCCCACACCAGTTTGGAACGTCACGGCTGATACATTT
GTAATATCAAAATAACAATAGGAGTATAAACCTACCTACTTAATAGTAGG
CGGTTTCATGTAATCCCGGAACCGGCAGTAAAAGCACAGTTGCGACCGGT
CTTTTGAGGCTCAGACTTATGCTGTATCATAGAACACATCGTCCCTTCCT
CTCTCGACACAATAGTAACGTGTTGCTTGTTTTTTCTCGCATGAACATCT
TGGAAGGCCTCCCGTGAGTGAGAGTTTTGTTTTTTTTCACCAACAATTGC
AAGACGTGCGTACGAACCAGGTACGTCTTTTAGGTCGTGACATCATACCG
CACTTGCCCGTTTCCTCCCTTATTGCACAGCTCGCACACGCCATCGAGGT
ATGACCCGAGGCGGCACGCTGTCGTTTGGGAGGACAGCATGTGCTTCCCA
GTCCGTTACAGAGACCTTGACCGGAATTCACAGCTGGTGAGATGGTAGAG
GGAAGGGGGAGGTGATTGGGAGCATGCCGTCGTTTGGGCGGGGGGGGGTC
TATACATTGGTTACTTGGCTCGACGTGTATTTCGTTGTTTAAACGCTTTT
ACGCAGCTGTATTACTGATTGCAAGAGCGAAGGTTTGCATTGTGGTATCG
AATAATCGGTATACTAATACATGCCGATATGTGACTCAAACGTTCGCTCG
GGAGCTTCGATCACAACTGTATTGGAATGCAGAACCAACCAATCCCAGGA
GACGACCCCCAAGGCTTGTCGCAGCTTTTTCATCCTTGTGCGACGCTGCT
CTTTTCTTTTTCACCCTCAAGTGCAAGTGCCGTGGGCGACGACCTCTGTT
GTCGTGTCACTCGTCACCCCTATATGACAAGACCGCCTCGATGTCGTCTC
CGCGCAGGTGGTGGTGCTGAGGGGGGCGAAGAACAGACTCGTGGGAGTGG
CGAGCATGCGCTTTTTTGACGTTAACGGCTCTCTCGCCATGGGTCTGCAG
AAGCGCCCGTTTCAGTTTACATCCAAGCTGCCCTTCTCGTGGGACCCGGC
CTCCCGACCGTCTGGGAGGGAGCCGGGAGAAGACGGGGTGTGGTGCGGTG
TGGCCGACGGGAATGCACGGGACGAGCAGTGTTTCGACGACAGCGTTCCA
AAGGAAGACTGGGGCTTTCGTCTGGAGCAGGTGCAAGGAGTGTTGATTTT
GTTTCAACAATTCGATGACAGAAAATCGACGAGCTAGTGGGAAAGCTGAA
CCTTGTGTGCGATAAAAACCAAGCATGTACCGGGGGGGGGTGGGGGGGGG
GGGGGGGGCATTTGTGCGCACGGCGCATGCTCAGGCAGGCGCCGCGCTGA
GCGATGAGCTCCTGTGAGCTGGACTAGGAAATTAAAGTAATGGATAAAAA
CAAGGGGGAAATAGTCAAACATGGGTGCATCCAGCCACTTTCCGGCCGAA
AACAGGTACATATGGGACGCATGGGGCGAAACACAACATGTACCTGTTTT
TGGCCGGAAATGACGCAAAACTATCTGGCTAAATGCTGGACTTCCTCAAG
TGTATACTAAGTACATGAACACAACTGATTGAAACCCTGCCCATTACGTG
TAATGATTACCACCCCTCGACGTTACAGCCGACACAAAACGCAGTGATCG
TAGCATGCCAACCACGGTGAGCTCTGCAGCAAACTCTGCCTCGATGTATG
CGTCTCGGGCTGGGGAAGACTGCGGTGTACTGCTACTACTACTGTGTTAC
GCAGTGCTAAGTGTTGTAAATTGCCAAATAATTGAATCCTCCGGGTTACT
TTTTATGCTATGATACACCACTAGCTCTACTACCGGAGCGTGAGCATTGC
TATTTTGGCGGTCTCCACCGTTGTCTGCTTTACATCCGCGGTCATCCTTC
AAAACTGTTCGGAAACGGCCGTAGGCGGTGCTATTGTTGTTATCGCAAAG
ACGCAGCCCACATGGAGTGCTGCGGCAGCAGAAGTCCTGTCTGCCGATGA
TGGTGTTTATGTTGTAGACAGAGTCTGTTGCAACGGAGTGTAGGGGTATC
GGAGGAGGTTAAGGTTCATAGACGTGTGTACTTGGATGTATGTAGGAGGG
TGGGGTAGAGGCGTCGTGGTGTAGTGTAGGTATAGTAAGCATTGCTATTG
GTTGTGTTTTGGGGGACGTCTGTACCAACGTGTGTTACCGTGTGTTTCGC
GCGTCTCCCATGATACGTCGCGCGTCAGCGCGCGCTCTGGCGTCCTGTGT
GAGATGTAACATGGCATGGCCTGATTGGTTGAAAATTGGCCAAAATCGGA
ACAAGTTTGGATAAAAAACAGTTGAAAGCCCAGTCAAGTAGAGGATCCGA
CGTGTAACTGGCCACCTTCCGGCCAAAACCAGGTACACGACTCATCGTTG
GCCAATCAAAGGACTCCTGGCGTGTGTTTTTTGCCTTGTTTTTTGGTTGT
ACCCGTTTTTGGCCGGAAAGTGGCTGGATGTACCTGTTTTTGGCTTTGCC
CAAAATAAAAATACCCGTGCGTATTTTTTCTTTGTTGAGTTTCCCGAAGA
GCCATGCTAAAGATAAAATGCGGTGTTGTTGACGCGCGAATCGCTGCGCG
GTTTTGACGGAGCTCAAAGGATGCTATGAAGCGATGCGTGTTGTCTACAC
CCTGAGCGCGTCGACCTTCCTACTCTTTCAGAAGGTTCGATGAACAGCGG
TTCTTTCCGCGTCCATGCGGCCGGTAGGACACCGTGTGGCCACTTGTAAA
ACTGGCTGCAACGACAGACGCGCCTCGTACGCAATATAGCAGACATCCGT
AGCCTGTGACACAGTAGTAATCGAACATGCTTCTACCGCAAGTGCTCGAG
TATGAATAAACCCCCACAAATCTCAGCAGCAGATACTCGTACCCCCCCCT
CCCCTCCCCGGCCCACCTACACGCACGTACGTTTTTTTTTGTGTTCTACT
TACGGCCTAAGATGCGAGAGGAGTACAAACTGTTTGCGATGGACAGAGCG
GACTGGCTAGACCCTGTGTCGCTGTCGCGCGTTGACCGTCTCGTGGCGGC
GCTCGCGGATCCCGAAGAGCTTCGGAAACACCGCGCCTACCAGACAGAA
back to top

Coding sequence (CDS) from alignment at D-herbacea_F_contig100:799406..804204-

>mRNA_D-herbacea_F_contig100.253.1 ID=mRNA_D-herbacea_F_contig100.253.1|Name=mRNA_D-herbacea_F_contig100.253.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1722bp|location=Sequence derived from alignment at D-herbacea_F_contig100:799406..804204- (Desmarestia herbacea DmunF female)
ATGACAAGCCTTGACTATAAGGAGGACGCTAGAGATCTGCACGCCTTCAA
GGAGCTGCGTTTCTTTCTCAGCCATGCCGTTCCCCTCGAGATACGCTGCA
GCATATCGCGCCTCGAGCTTCCTCTTGTTGCGGACTATCTGTTGGGCGGT
ACTTTCAACGATACTGACCAACAGCGATTCCCTGACCGGGATCAACAGCG
GGGGCATCAACAACAGCAGCAAAGTCTTGGTTGCGGAGAGGAAGCAATGG
CGGCTATTGTGAGACGTATCGTTTCCGAGCCGGAGCTGGTTGCCACCTGC
CAGATTTTCTGCGACGGACAGCCGATGCACGGTGTGCCTGTGAGATGACA
AGCCTTGACTATAAGGAGGACGCTAGAGATCTGCACGCCTTCAAGGAGCT
GCGTTTCTTTCTCAGCCATGCCGTTCCCCTCGAGATACGCTGCAGCATAT
CGCGCCTCGAGCTTCCTCTTGTTGCGGACTATCTGTTGGGCGGTACTTTC
AACGATACTGACCAACAGCGATTCCCTGACCGGGATCAACAGCGGGGGCA
TCAACAACAGCAGCAAAGTCTTGGTTGCGGAGAGGAAGCAATGGCGGCTA
TTGTGAGACGTATCGTTTCCGAGCCGGAGCTGGTTGCCACCTGCCAGATT
TTCTGCGACGGACAGCCGATGCACGGTGTGCCTGTGAGCTCGCACACGCC
ATCGAGGTATGACCCGAGGCGGCACGCTGTCGTTTGGGAGGACAGCATGT
GCTTCCCAGTCCGTTACAGAGACCTTGACCGGAATTCACAGCTGCTCGCA
CACGCCATCGAGGTATGACCCGAGGCGGCACGCTGTCGTTTGGGAGGACA
GCATGTGCTTCCCAGTCCGTTACAGAGACCTTGACCGGAATTCACAGCTG
GTGGTGGTGCTGAGGGGGGCGAAGAACAGACTCGTGGGAGTGGCGAGCAT
GCGCTTTTTTGACGTTAACGGCTCTCTCGCCATGGGTCTGCAGAAGCGCC
CGTTTCAGTTTACATCCAAGCTGCCCTTCTCGTGGGACCCGGCCTCCCGA
CCGTCTGGGAGGGAGCCGGGAGAAGACGGGGTGTGGTGCGGTGTGGCCGA
CGGGAATGCACGGGACGAGCAGTGTTTCGACGACAGCGTTCCAAAGGAAG
ACTGGGGCTTTCGTCTGGAGCAGGTGGTGGTGCTGAGGGGGGCGAAGAAC
AGACTCGTGGGAGTGGCGAGCATGCGCTTTTTTGACGTTAACGGCTCTCT
CGCCATGGGTCTGCAGAAGCGCCCGTTTCAGTTTACATCCAAGCTGCCCT
TCTCGTGGGACCCGGCCTCCCGACCGTCTGGGAGGGAGCCGGGAGAAGAC
GGGGTGTGGTGCGGTGTGGCCGACGGGAATGCACGGGACGAGCAGTGTTT
CGACGACAGCGTTCCAAAGGAAGACTGGGGCTTTCGTCTGGAGCAGATGC
GAGAGGAGTACAAACTGTTTGCGATGGACAGAGCGGACTGGCTAGACCCT
GTGTCGCTGTCGCGCGTTGACCGTCTCGTGGCGGCGCTCGCGGATCCCGA
AGAGCTTCGGAAACACCGCGCCTACCAGACAGAAATGCGAGAGGAGTACA
AACTGTTTGCGATGGACAGAGCGGACTGGCTAGACCCTGTGTCGCTGTCG
CGCGTTGACCGTCTCGTGGCGGCGCTCGCGGATCCCGAAGAGCTTCGGAA
ACACCGCGCCTACCAGACAGAA
back to top