prot_D-herbacea_F_contig100.247.1 (polypeptide) Desmarestia herbacea DmunF female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-herbacea_F_contig100.247.1
Unique Nameprot_D-herbacea_F_contig100.247.1
Typepolypeptide
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Sequence length212
Homology
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BLAST of mRNA_D-herbacea_F_contig100.247.1 vs. uniprot
Match: A0A6H5JKU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKU3_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 1.090e-42
Identity = 99/205 (48.29%), Postives = 128/205 (62.44%), Query Frame = 0 
Query:   13 VVEGVEEKAEDASGDTKQAAGDSSAFASLTDTFASAKTSTGDALATLKGWSQTTGSAVGGVFSTVRTWEEEGTPLRGVFKSARLSLDDVACKLREKNATREEKMKERMEEMMKRR----KQFDDGGTLSKCRELKRQHPELVVGGVTLAVALPSALAGKRAFFRNGAAALTVSAGVVYGVGWFKRR--MAKQSEGWTRDSGAPRP 211
            V E +EEK ++ + D K+                S  TS+   L TLKG  QT    +G    T+  W+++GTPLR +FK+ARL L+D   K REK A R+ KM+E +++M + R    K+FD  G L+KC E+K+QHPELVVGG TLAVALPSALAG+RAFFRNGA AL +S+ VVYG  W KRR  +  Q  G + DS AP P
Sbjct:   11 VAETLEEKVQELATDAKEET--------------SGSTSSPGVLDTLKGGFQTITGGMGMAGQTLGEWKDQGTPLRRMFKTARLDLEDATAKAREKAACRQTKMRENLQKMAEERQARFKEFDKSGALTKCSEIKKQHPELVVGGFTLAVALPSALAGRRAFFRNGARALVLSSAVVYGGAWMKRRGLIPPQLVG-SDDSEAPPP 200
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BLAST of mRNA_D-herbacea_F_contig100.247.1 vs. uniprot
Match: D7G1P9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1P9_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 1.540e-13
Identity = 41/58 (70.69%), Postives = 46/58 (79.31%), Query Frame = 0 
Query:  141 ELKRQHPELVVGGVTLAVALPSALAGKRAFFRNGAAALTVSA--GVVYGVGWFKRRMA 196
            E+K QHP+LVVGG+TLAVALPSALAG+R FFRNGA AL +S    VVYG  W KRR A
Sbjct:  110 EIKNQHPKLVVGGITLAVALPSALAGRRTFFRNGARALVLSPLPYVVYGGAWMKRRGA 167
[Close]
BLAST of mRNA_D-herbacea_F_contig100.247.1 vs. uniprot
Match: D7FHX9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHX9_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 9.230e-13
Identity = 56/152 (36.84%), Postives = 82/152 (53.95%), Query Frame = 0 
Query:   13 VVEGVEEKAEDASGDTKQAAGDSSAFASLTDTFASAKTSTGDALATLKGWSQTTGSAVGGVFSTVRTWEEEGTPLRGVFKSARLSLDDVACKLREKNATREEKMKERMEEMMKRR----KQFDDGGTLSKCRELKRQHPELVVGGVTLAVAL 160
            V E +EEK ++   D K+  G S++ A + DT              LKG  QT    VG V+ T+  W+++GTPLR +FK+ARL ++D A K RE+ A R+ KM+E M++M + R    K+FD  G  S  R + R+    V  G  L + L
Sbjct:   11 VAETLEEKVQELVTDAKEETGGSTSAAGVLDT--------------LKGGFQTVTGGVGMVWQTLGEWKDQGTPLRKMFKTARLDIEDTAAKARERAACRQTKMRENMQKMAEERQARFKEFDKSGARS-SRVMNRRRSLTVCPGSLLLLLL 147
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig100.247.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JKU3_9PHAE1.090e-4248.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1P9_ECTSI1.540e-1370.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHX9_ECTSI9.230e-1336.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Desmarestia herbacea DmunF female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..146
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 170..191
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 192..211
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 147..164
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 165..169
NoneNo IPR availableTMHMMTMhelixcoord: 169..191
NoneNo IPR availableTMHMMTMhelixcoord: 148..165

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig100contigD-herbacea_F_contig100:767360..771981 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Desmarestia herbacea DmunF female2022-09-29
Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-16
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig100.247.1mRNA_D-herbacea_F_contig100.247.1Desmarestia herbacea DmunF femalemRNAD-herbacea_F_contig100 767295..773660 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-herbacea_F_contig100.247.1 ID=prot_D-herbacea_F_contig100.247.1|Name=mRNA_D-herbacea_F_contig100.247.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=212bp
MEKDEEKYDAVDVVEGVEEKAEDASGDTKQAAGDSSAFASLTDTFASAKT
STGDALATLKGWSQTTGSAVGGVFSTVRTWEEEGTPLRGVFKSARLSLDD
VACKLREKNATREEKMKERMEEMMKRRKQFDDGGTLSKCRELKRQHPELV
VGGVTLAVALPSALAGKRAFFRNGAAALTVSAGVVYGVGWFKRRMAKQSE
GWTRDSGAPRP*
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