mRNA_D-herbacea_F_contig1.116.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1.116.1
Unique NamemRNA_D-herbacea_F_contig1.116.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
[Close]
BLAST of mRNA_D-herbacea_F_contig1.116.1 vs. uniprot
Match: D7FUB1_ECTSI (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUB1_ECTSI)

HSP 1 Score: 344 bits (883), Expect = 7.860e-116
Identity = 166/214 (77.57%), Postives = 186/214 (86.92%), Query Frame = 1 
Query:  106 KPPDKPVPTPEEEAERQAVQMRALDTVLKTKNAGEVSPPVYAEPADPFPENPAEALALDPLPPSVAGRKVIIAQKSKPATTTGDGGGLYCWNLTFKHQARNEQERWSNPLMGWTSTSDPMSNMKLSFSTPEQAVRFCKKRGWKYEVKAPSKREAVFGKFAYSHNFLPHNVEHEIKINGTKTEHFKFPTAGASHYDRPLNFEGTSTVRQHGNPEQ 747
            KPPDK  PTPEEE  ++  QMRALD VL+ +N   VSPP+Y+   +PFPENP EALALDPLPP+VAGRKVIIAQKSKPATTTG  GGLY WNLTFK     ++ERWSNPLMGWTST DPMSNM+LSFSTPEQAV+FC+KRGWKYEVKAP+KREAVFGKFAYSHNFLPHNVEH++K+NGTKT+ F FPTAGASHY+RPLNF GT+ VRQHGNPEQ
Sbjct:   33 KPPDKXKPTPEEEEAKKVAQMRALDVVLEAQN-NTVSPPMYSTRDEPFPENPEEALALDPLPPTVAGRKVIIAQKSKPATTTGTAGGLYGWNLTFK-----QKERWSNPLMGWTSTGDPMSNMQLSFSTPEQAVKFCQKRGWKYEVKAPAKREAVFGKFAYSHNFLPHNVEHDLKVNGTKTQQFTFPTAGASHYERPLNFVGTAPVRQHGNPEQ 240
[Close]
BLAST of mRNA_D-herbacea_F_contig1.116.1 vs. uniprot
Match: A0A7S4A6A8_9STRA (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A6A8_9STRA)

HSP 1 Score: 155 bits (392), Expect = 2.100e-41
Identity = 85/196 (43.37%), Postives = 112/196 (57.14%), Query Frame = 1 
Query:  157 AVQMRALDTVLKTKNAGEVSPPVYAEP---ADPFPENPAEALALDPLPPSVAGRKVIIAQKSKPATTTGDGGGLYCWNLTFKHQARNEQERWSNPLMGWTSTSDPMSNMKLSFSTPEQAVRFCKKRGWKYEVKAPSKREAVFGKFAYSHNFLPHNVEHEIKINGTKTEHFKFPTAGASHYDRPLNFEGTSTVRQHG 735
            A  +  L+ +   +N    +P +   P   A   P +P EA AL  +P     R V+I+QK++ ATT+        W L +K      +ERW+NPLMGWTST+DP+SN +L F T EQA RF  K GW +EV AP +R   +G   YSHNFL   VE ++K+NGT+T+HF  P   ASHY RPL F G     QHG
Sbjct:   32 AADLANLERIKAERNRSVTAPHIAVVPDGLAPAGPAHPEEAAALMRIPEIHKKRTVVISQKAQAATTSASHASK-AWRLGWK-----TEERWTNPLMGWTSTADPLSNTELKFETAEQAARFATKMGWAFEVAAPIERNKQYGTNTYSHNFLQKWVETDLKVNGTETKHFARPRPNASHYFRPLKFHGDGECVQHG 221
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BLAST of mRNA_D-herbacea_F_contig1.116.1 vs. uniprot
Match: W7TF31_9STRA (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TF31_9STRA)

HSP 1 Score: 130 bits (328), Expect = 2.250e-32
Identity = 81/219 (36.99%), Postives = 117/219 (53.42%), Query Frame = 1 
Query:  109 PPDKPVPTPEEEAERQAVQMRALDTVLKTKNAG---EVSPPVYAEPADP---FPENPAEALALDPLPPSVAGRKVIIAQKSKPATTTGDGGGLYCWNLTFKHQARNEQERWSNPLMGWTSTSDPMSNMKLSFSTPEQAVRFCKKRGWKYEVKAPSKREAVFGKFAYSHNFLPHNVEHEIKINGTKTEHFKFPTAGASHYDRPLNFEGTSTVRQHGNPEQ 747
            PP KP      E   + V   A ++ +K   AG   +V P + A+  D     P+   E   L+  P +   RKV I QK++ A  +      Y W +++       QERWSNPLMGWTST+DP+SN +L+F T E+A RF K++GW   ++    RE V G   Y+ NFL  +VE+++K  GTKT+ F  P   AS++ +PL + G     QHG P +
Sbjct:   34 PPQKPXXXXSPEELEKMVS--ASESHVKEIRAGTMKKVQPYLVADVPDLPTYLPQKEEEMAVLNEQPANQRARKVTIRQKAQTAMQSA-ANKSYPWYISW-----GSQERWSNPLMGWTSTADPLSNQQLAFDTAEEAARFAKRQGWAVSIEPAISREQVLGTKKYAFNFLAEDVENKLKREGTKTKQFTNPGYTASNWFQPLKYHGDGECEQHGPPRE 244
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BLAST of mRNA_D-herbacea_F_contig1.116.1 vs. uniprot
Match: A0A7S2UYX7_9STRA (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYX7_9STRA)

HSP 1 Score: 129 bits (325), Expect = 5.020e-32
Identity = 79/206 (38.35%), Postives = 107/206 (51.94%), Query Frame = 1 
Query:  133 PEEEAERQAVQMRALDTVLKTKNAGEVSPPV-----YAEPADPFPENPAEALALDPLPPSVAGRKVIIAQKSKPATTTGDGGGLYCWNLTFKHQARNEQERWSNPLMGWTSTSDPMSNMKLSFSTPEQAVRFCKKRGWKYEVKAPSKREAVFGKFAYSHNFLPHNVEHEIKINGTKTEHFKFPTAGASHYDRPLNFEGTSTVRQHG 735
            PE   E +  Q+RA       +N  EV+P +     Y    D  P NPAE   L  +P   + R V+I QK+K A T+G  G    W +T+K       ERW+NPLMGWTST+DPMSN+ L F + ++A  F  K GW +E+    +   V G  AYSHNFLP   E  ++  GTK + F      +SH+ R L + G   +  HG
Sbjct:   40 PELSEEEKEAQIRAGMKETFAENQKEVTPWMVKDLPYVRSTD-LPANPAELATLTGMPQKQSNRTVVIRQKTKSAMTSGLQG-TKAWTITWKMG-----ERWTNPLMGWTSTNDPMSNLTLRFDSADEAKNFAIKNGWDFELHETPEVRTVAGNKAYSHNFLPKAFEETLREEGTKNKIFTRDAPNSSHFYRYLKYHGDGEIPFHG 238
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BLAST of mRNA_D-herbacea_F_contig1.116.1 vs. uniprot
Match: A0A7S1FML6_9STRA (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FML6_9STRA)

HSP 1 Score: 125 bits (315), Expect = 2.640e-30
Identity = 73/173 (42.20%), Postives = 92/173 (53.18%), Query Frame = 1 
Query:  226 YAEPADPFPENPAEALALDPLPPSVAGRKVIIAQKSKPATTTGDGGGLYCWNLTFKHQARNEQERWSNPLMGWTSTSDPMSNM--KLSFSTPEQAVRFCKKRGWKYEV-KAPSKREAVFGKFAYSHNFLPHNVEHEIKINGTKTEHFKFPTAGASHYDRPLNFEGTSTVRQHG 735
            Y   A   PEN AE   LD        R V I Q +K A T+ +      W + + H+     E W NPLMG+ S +DPM+ +  ++ F TPEQAV FCKKRGW YEV  A +  +  FG   Y HNF     + +++  G K E +    AGASHY RPLNF GT  V QHG
Sbjct:   82 YKNDAAYLPENIAEFAVLDKAHDDQKHRTVTIKQYAKSAMTSNESNAR-AWYIDWDHE-----ENWENPLMGYVSGADPMNQVLKQMRFDTPEQAVAFCKKRGWTYEVGPADTDVQTEFGITQYEHNFFSKAAQVDVRTRGRKCELYHRSAAGASHYFRPLNFHGTDKVEQHG 248
[Close]
BLAST of mRNA_D-herbacea_F_contig1.116.1 vs. uniprot
Match: A0A7S1FL80_9STRA (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FL80_9STRA)

HSP 1 Score: 120 bits (301), Expect = 2.130e-29
Identity = 64/146 (43.84%), Postives = 83/146 (56.85%), Query Frame = 1 
Query:  307 RKVIIAQKSKPATTTGDGGGLYCWNLTFKHQARNEQERWSNPLMGWTSTSDPMSNM--KLSFSTPEQAVRFCKKRGWKYEV-KAPSKREAVFGKFAYSHNFLPHNVEHEIKINGTKTEHFKFPTAGASHYDRPLNFEGTSTVRQHG 735
            R V I Q +K A T+ +      W + + H+     E W NPLMG+ S +DPM+ +  ++ F TPEQAV FCKKRGW YEV  A +  +  FG   Y HNF     + +++  G K E +    AGASHY RPLNF GT  V QHG
Sbjct:    9 RTVTIKQYAKSAMTSNESNAR-AWYIDWDHE-----ENWENPLMGYVSGADPMNQVLKQMRFDTPEQAVAFCKKRGWTYEVGPADTDVQTEFGITQYEHNFFSKAAQVDVRTRGRKCELYHRSAAGASHYFRPLNFHGTDKVEQHG 148
[Close]
BLAST of mRNA_D-herbacea_F_contig1.116.1 vs. uniprot
Match: A0A485L9T4_9STRA (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L9T4_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.490e-28
Identity = 61/145 (42.07%), Postives = 84/145 (57.93%), Query Frame = 1 
Query:  304 GRKVIIAQKSKPATTTGDGGGLYCWNLTFKHQARNEQERWSNPLMGWTSTSDPMSNMKLSFSTPEQAVRFCKKRGWKYEVKAPSKREAVFGKFAYSHNFLPHNVEHEIKINGTK-TEHFKFPTAGASHYDRPLNFEGTSTVRQHG 735
            GRK I+   ++    +G     + W + F       ++ W NPLMGWTS +DP++++ L F T E A  F K++GW  EV  P + E   GK AYSHNFLP +VE+++K  G K T HFK PT G SH+ + L + G   V QHG
Sbjct:   83 GRKAIVYMPARNQMQSGTYN-THHWEIRF-----GTRQTWQNPLMGWTSGADPVADLALKFDTKEAAADFAKRQGWTVEVFEPKETEDFEGKLAYSHNFLPLDVENKLKKYGKKATPHFKHPTGGHSHWVKTLKYHGNGEVAQHG 221
[Close]
BLAST of mRNA_D-herbacea_F_contig1.116.1 vs. uniprot
Match: A0A7R9YBA1_9STRA (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBA1_9STRA)

HSP 1 Score: 119 bits (297), Expect = 1.180e-27
Identity = 57/123 (46.34%), Postives = 81/123 (65.85%), Query Frame = 1 
Query:  370 YCWNLTFKHQARNEQERWSNPLMGWTSTSDPMS-NMKLSFSTPEQAVRFCKKRGWKYEVKAPSKREAVFGKFAYSHNFLPHNVEHEIKINGTKTEHFKFPTAGASHYDRPLNFEGTSTVRQHG 735
            Y W++T+     NE+ RW+NPLMGW S++DPM+    L F T EQAVRFC+KRGWKY+V+    ++    +  Y+HNFLP +VE  ++  G K + +K   A  S+Y RPL + G++TV QHG
Sbjct:  147 YSWHITW-----NERPRWANPLMGWRSSADPMNVGTDLQFDTAEQAVRFCEKRGWKYQVEDLPAKKMSMAENTYAHNFLPKSVEGNLRKEGRKNKIWKQNGAHKSNYFRPLEYHGSTTVPQHG 264
[Close]
BLAST of mRNA_D-herbacea_F_contig1.116.1 vs. uniprot
Match: A0A1V9ZM03_9STRA (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZM03_9STRA)

HSP 1 Score: 116 bits (291), Expect = 3.070e-27
Identity = 60/149 (40.27%), Postives = 86/149 (57.72%), Query Frame = 1 
Query:  304 GRKVIIAQKSKPATTTGDGGGLYCWNLTFKHQARNEQERWSNPLMGWTSTSDPMSNMKLSFSTPEQAVRFCKKRGWKYEVKAPSKREAVFGKFAYSHNFLPHNVEHEIKINGTKTE-HFKFPTAGASHYDRPLNFEGTSTVRQHGNPEQ 747
            GRK II   ++    +GD    + W + F       ++ W NPLMGWTS +DPM  M + F+T E+AV F +++GW  EV   +++E   GK AYSHNFLP +VE+++K  G K   HFK    G SH+ + L + G   V QHG  ++
Sbjct:   84 GRKAIIYMPARNQMQSGDYN-THHWEIRF-----GTRQTWQNPLMGWTSGADPMDAMVMKFNTKEEAVAFAQRQGWSTEVMPVAEKEDFEGKIAYSHNFLPLDVENKLKKYGKKAAPHFKHAAGGHSHWVKTLKYNGNGEVVQHGGDKE 226
[Close]
BLAST of mRNA_D-herbacea_F_contig1.116.1 vs. uniprot
Match: A0A1V9YYP1_9STRA (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YYP1_9STRA)

HSP 1 Score: 115 bits (288), Expect = 7.940e-27
Identity = 71/213 (33.33%), Postives = 112/213 (52.58%), Query Frame = 1 
Query:  136 EEEAERQAVQMRALDTVLKTKNAGEVSPP--------VYAEPADPFPENPAEALALDPLPPSVAGRKVIIAQKSKPATTTGDGGGLYCWNLTFKHQARNEQERWSNPLMGWTSTSDPMSNMKLSFSTPEQAVRFCKKRGWKYEVKAPSKREAVFGKFAYSHNFLPHNVEHEIKINGTKTE-HFKFPTAGASHYDRPLNFEGTSTVRQHGNPEQ 747
            EE+ +  A+    L+T  K +   +V PP        +  E + P+P+   E   ++ +     GRK II   ++    +GD    + W + F       ++ W NPLMGWTS +DP+  + L F+T E+A+ F +++GW  EV   +++E   GK AYSHNFLP +VE+++K  G K   HFK    G SH+ + L + G   V QHG  ++
Sbjct:   23 EEKVDDSALMKEILETQQKRRY--DVLPPHATTYENAIIGETSLPYPK---ECAVVNAVGGWTKGRKAIIFMPARNQMQSGDYN-THHWEIRF-----GTRQTWQNPLMGWTSGADPIDALTLKFNTKEEALEFAQRQGWSTEVMPVAEKEDFDGKIAYSHNFLPLDVENKLKKYGKKAAPHFKHAKGGHSHWVKTLKYHGNGEVVQHGGDKE 224
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1.116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUB1_ECTSI7.860e-11677.57NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
A0A7S4A6A8_9STRA2.100e-4143.37NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
W7TF31_9STRA2.250e-3236.99NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
A0A7S2UYX7_9STRA5.020e-3238.35NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
A0A7S1FML6_9STRA2.640e-3042.20NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
A0A7S1FL80_9STRA2.130e-2943.84NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
A0A485L9T4_9STRA1.490e-2842.07NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
A0A7R9YBA1_9STRA1.180e-2746.34NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
A0A1V9ZM03_9STRA3.070e-2740.27NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
A0A1V9YYP1_9STRA7.940e-2733.33NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1contigD-herbacea_F_contig1:2896431..2904399 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.0
Seed ortholog evalue1e-22
Seed eggNOG ortholog112098.XP_008614044.1
Preferred nameNdufS4
KEGG koko:K03937,ko:K13174
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko03013,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map03013,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143,M00405,M00406
Hectar predicted targeting categorymitochondrion
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009266,GO:0009409,GO:0009628,GO:0009631,GO:0009987,GO:0010876,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0019915,GO:0022900,GO:0022904,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0033036,GO:0034641,GO:0042773,GO:0042775,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0046034,GO:0046483,GO:0046872,GO:0046914,GO:0050136,GO:0050896,GO:0050897,GO:0051179,GO:0051235,GO:0055086,GO:0055114,GO:0065007,GO:0065008,GO:0070469,GO:0071704,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
EggNOG free text desc.oxidoreductase activity, acting on NAD(P)H
EggNOG OGsKOG3389@1,KOG3389@2759
Ec32 ortholog descriptionNADH dehydrogenase (ubiquinone)
Ec32 orthologEc-03_000900.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Exons5
Model size1060
Cds size753
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1.116.1prot_D-herbacea_F_contig1.116.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1 2896738..2904399 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927397.1783128-UTR-D-herbacea_F_contig1:2896430..28967371622927397.1783128-UTR-D-herbacea_F_contig1:2896430..2896737Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1 2896431..2896737 -
1690790147.1388707-UTR-D-herbacea_F_contig1:2896430..28967371690790147.1388707-UTR-D-herbacea_F_contig1:2896430..2896737Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1 2896431..2896737 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927397.1925204-CDS-D-herbacea_F_contig1:2896737..28968401622927397.1925204-CDS-D-herbacea_F_contig1:2896737..2896840Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2896738..2896840 -
1690790147.159077-CDS-D-herbacea_F_contig1:2896737..28968401690790147.159077-CDS-D-herbacea_F_contig1:2896737..2896840Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2896738..2896840 -
1622927397.2008088-CDS-D-herbacea_F_contig1:2899076..28991861622927397.2008088-CDS-D-herbacea_F_contig1:2899076..2899186Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2899077..2899186 -
1690790147.1782284-CDS-D-herbacea_F_contig1:2899076..28991861690790147.1782284-CDS-D-herbacea_F_contig1:2899076..2899186Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2899077..2899186 -
1622927397.216292-CDS-D-herbacea_F_contig1:2900171..29002971622927397.216292-CDS-D-herbacea_F_contig1:2900171..2900297Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2900172..2900297 -
1690790147.1903083-CDS-D-herbacea_F_contig1:2900171..29002971690790147.1903083-CDS-D-herbacea_F_contig1:2900171..2900297Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2900172..2900297 -
1622927397.2262306-CDS-D-herbacea_F_contig1:2901114..29013171622927397.2262306-CDS-D-herbacea_F_contig1:2901114..2901317Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2901115..2901317 -
1690790147.1984906-CDS-D-herbacea_F_contig1:2901114..29013171690790147.1984906-CDS-D-herbacea_F_contig1:2901114..2901317Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2901115..2901317 -
1622927397.2359924-CDS-D-herbacea_F_contig1:2904188..29043991622927397.2359924-CDS-D-herbacea_F_contig1:2904188..2904399Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2904189..2904399 -
1690790147.2063837-CDS-D-herbacea_F_contig1:2904188..29043991690790147.2063837-CDS-D-herbacea_F_contig1:2904188..2904399Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 2904189..2904399 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1.116.1

>prot_D-herbacea_F_contig1.116.1 ID=prot_D-herbacea_F_contig1.116.1|Name=mRNA_D-herbacea_F_contig1.116.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=251bp
MLAARASSAASLRIVRSGTSLSVAAGRAASRPFSAKPPDKPVPTPEEEAE
RQAVQMRALDTVLKTKNAGEVSPPVYAEPADPFPENPAEALALDPLPPSV
AGRKVIIAQKSKPATTTGDGGGLYCWNLTFKHQARNEQERWSNPLMGWTS
TSDPMSNMKLSFSTPEQAVRFCKKRGWKYEVKAPSKREAVFGKFAYSHNF
LPHNVEHEIKINGTKTEHFKFPTAGASHYDRPLNFEGTSTVRQHGNPEQA
*
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mRNA from alignment at D-herbacea_F_contig1:2896431..2904399-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1.116.1 ID=mRNA_D-herbacea_F_contig1.116.1|Name=mRNA_D-herbacea_F_contig1.116.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=7969bp|location=Sequence derived from alignment at D-herbacea_F_contig1:2896431..2904399- (Desmarestia herbacea DmunF female)
ATGCTCGCTGCTCGCGCTTCTAGTGCCGCTTCCTTGAGGATAGTGCGGTC
CGGCACGTCGCTTTCCGTTGCCGCCGGCCGCGCGGCCTCGCGACCATTCA
GCGCAAAGCCCCCGGACAAACCGGTTCCTACGCCCGAAGAGGAAGCAGAG
AGACAGGCGGTACAGATGCGTGCCTTAGACACAGTTCTCAAGACCAAGAA
CGCAGGTGAGGGTTAGCTCGTGGCTTCGTCGTGATGCTCCCTCGCTGTTG
CGTGGTGCGCCCCAGCATATGTTTGAAATATGTCGACGGCGTGTTGCATT
CTTGACTTCTTCCGTGTTCAAATGTACGAGTACACAACTGACGTTCGTTC
TTGTTGGGCTGATATAATAGCTCCCTTTTCCCTCACAGACGGTACCAAGA
CAGAGCATGTATGACTCGTATTGTCGTGTCTACGCTCAGGTCTACGGATG
CGATACAAAAGTAGTACGAGCATCTTACAAGCATTGTATGTGGATGTGCA
CTCTGGTATGATGGTGACCTTTTATCGTGTACTCCTGTATGACGAGTACT
GTCTGTTGTTGTACTGTCCTGTCGTCTTGTGCTGTCTTGTCTTCAATCCG
TTTGTAAAACAGTAGTACATAGTAGTAATCAGCACATCAACAGCAACGAT
GTACCACGCTGTACCATACTGTACTCGTACGAGCACAGTTTTGGAACTTT
TCTGTCGAGCCTCGCGCTACTGCGCTAGGCTATGCCTAAACCCGTAGATT
ACCCGCGACCGAAGTATCACACATCAGACGCACAGTTGTAGTAGAAGTGG
ACTGGGCGAGTATCCCCTCGATCCCCAACCAGTCTTGAAACGTCCCAGCG
GGTGTAATGTTGGGGTGGGGTGGGGTGGGGTTAGGGTTGGTCTTGGGGTG
GGGTTGGAATTGGGGTTGGGCAGTCGGTCGGTCGGTCGGTCGGTCGGTCG
GTCGGTCGGCTAGGTGGCCTTCCCACGGCCGCCATCTTCGGTCGCGCTTG
TATGTTTTGTAACATAGAAATAAAAACTATGCCATACTCGTAGGTGTCGC
GTGCAGAGCCACCTGTAAAGGTGGTGTATTTTGGACGGACCCAAACCTGT
CTCGTAACCCACACTTGAGGGCAGTTTTGGATTTCCCTTTCCGGGATAGC
CCGGTGACTCTCCGTGGCATGGATCAGCTGCAACAGACAGTCTCGATCAC
TGCATACTGTGCTTCCGAGCATTGATATCACTATAATACAGCAGACAGTA
GTGACCGCTGCAGTACGCTTGACCATGGAAGTTGGGACTCTGAACCACAG
GTGACATGTACTCACCGCATCCTATTGGTTGGGACGAAGGAGTTCAATTG
ATATTTTAGGGCGTTTTTTCGATGTTGCTGCCACACGTTCTGATAACAAA
ATGAGCATCCTGAAGATCCCGCACCCTTAGCACTTGTAAAAGGACCTCTC
CAGGGGGGAAGGGGCTCTCGCGGGTGGGCGGGAAGGGAGGCAAATTGGCT
CGCGGCTTCCCCGTAATGGCGATCCGCCATCGTAGTAGTCGATTAGTGGC
CGCTCAAAAAGCGCGACCACGGACTATTCCAATATGTTTTTTTTTTACCG
ACCTACAGCCAAGCTCTGATAACGTGCCGTATGGGTATGATACATAATTG
CATACCAGTACAATGGCGCCTGCCCTAGGCGCATGCCAAGGGTGTAAAAA
AAAACCCGCAGGCAACGTGTCGGTGGCGTAAACATCGTGCCTGAAGGGCT
ACACGTGCTTTCAACATTAGAGGCGAGACGAAACCCAAGCAGGAGACGTA
ACACTGATAGTATTACATCATCCCCAAAAGGTAGGCGTTTCTTCTATCTA
AGCGCAGTTTGCCAATATAGGAGTACAGTACGGCACACATGACACAGTAG
AATGATACGCTATAATAAATGTACCTGTGGAACAGTACAGGAGTAGTAAT
AGTAGTATAATAGTATTAATAGTAGGATCTGGAGTAGTAGAAGTACTCGT
GGCTTCAGAAAAAAAGACGACACCATGCGGATTCGAACTCTGGCTACAGA
GAATACAGAGCAAAATTATCAATACACAGCTTATTAAATTGATTTTTTTT
ATTATTATGTTTTAGTTTTTTCGTTTTTGTTTTTTTTCCCGTTGTTGTGA
TGGTATAATAGTAGTGGTACAACAGTCATATGAGGAGGCTTCTCCGCTAC
TTTGTTTTGTATCATACCTCACACAGCATCTATCTCACATCGTCTCTCCT
CCATGATAACTAGCACTCCTTGAGTCGTCACTTTATTGCCAGCAGGCGCT
CTGCTGGTCACACTAGCCAGCCCTCCCTTCTTATGCATCCGCCCCTCCTT
TCTTGTATAACACATTGTCTTTATCGTCGTTTATCTATTGCTGAAGCTGT
GCTAGTTGTGTTCGTCCAGCCGCGACGCTCACATTGTTTCCGCTGACTGT
AGCTCATGAACCACATCGAGTTACCGACCGTGTATGAACACAAAGGAGTG
CTGCAATCGTCCAATCATCACATAACACAGGTGCATAGCTATGCAACTAG
CAGGGACTCCTTTGGGCACACCAGCCAGGGCTCCCTTCTTATGCATCCAC
CCCTCCTAGGAGCGTACTCATGATACTACTATAATATGATACTGTTTGTT
GTTGTAGAGCCTGCAAAATAAATACACGAACTCTGGCTCTTGTGGTGGAC
CCTTCGTATTGTTTTGCGTATCTTGGGACAGGAAGAAGAGAAAACACCCG
AATCTCCGCGGCTCTTCTCGGCGGGCATCGCGATGCCACACCAATGCCGC
CTGTGTCCATACGCAATATCGGTACACTCGCTATTACTATAGAATCAGGA
TTCGGTTCTTTATGAGCCGTTTGGGGCAATCGTATATTGGTGCATATTGC
ACCCGCTCCGTACTCGCATCATTTGGTACGATACCCACGACCACAATCCA
ACCCTCCGCCCGTGGGCCTTGCCCCTAGTATCCGACCATTGTACCGTTTC
TCCCATCTCCCATCATCGTGATGAGTAACCCAAAACCATTGTAACGTTCC
GTCCATCTCCCACCACCGTGATAATTTGTAAGTGTCGCCACCGGTGTACG
CTGAACCGGCGGACCCTTTCCCGGAAAACCCGGCGGAGGCGTTGGCGTTG
GATCCTCTGCCGCCCTCGGTGGCCGGGCGTAAGGTTATCATCGCGCAGAA
GAGCAAGCCGGCCACGACGACGGGAGACGGGGGCGGGCTTTACTGCTGGA
ACCTTACCTTCAAGCACCAGGCAAGAAACGAACAAGTTCTTGTGTTTAGA
TGGTGTTACAAGTGCTTATGTTAGATCATTAGGATGCTCGTTGTTTTATT
TTGGTATAGTGATACAGTAGTAGTACCAACGTGGGTTGTGTGTTTGTAGG
TCGTGTTACAACTGCTTACGGGGTCGGGTTGTACTGCTGGAGCGTTACCT
TCGAGCGCCAGACAAGAAATGAACAAGTCTTATTTATGTGTGTGTTTTAA
GGTTTCCGTGTTCAACTCGGTGATGCGGGGCACACGAAATATGTCAAACA
CAGTGCCAAGGTTTTGTTGTTGTGGGGTCCATCGTACGGACGAGCCGGGG
CCGTATCTCTCGCCAAATGCCTCCGGTCCGTTACTTTTCTTATGATGAGT
TGAACTTTCTTCGTTGACCTACATCAGCGAGTAAGTAACGTGTTGCATGT
CTCTCTCTCTTTAAGATTTCAATGCCCACGCCCCCAACGACGCACCCATG
CAGAACGTGATTGGCCCTCCTCGATAGTAGCGAGAAAGCGATCGATATCC
TAGGAGATAGATGGTGGCCACAACAACAACAGGCGAAACAGAAAGGGGAT
GAGACAAGCAAAAGGTTTTTATGTCAAGATATTGAAAAAAACGTAAAGAG
CGCCCAAATGTCGGAGATGTCTCTGTTAGGAGTAGAAACGGTGCGGTCCG
TCTCGAAAAGGATGCGTGGTCAATGGTCAAATGGCAAAGGCAGGCAACAA
ATGAGTACGCCAAATGCAGGCAACAAATGAGTACGCCTCCCCCCTCCCCC
CCCCGCCCCTCCCTTGACCCCGTTGGAAACCCCTTGGTTGCTTGTTTTGC
AGGAGCGTTGGTCCAACCCTCTGATGGGGTGGACAAGCACCTCCGACCCC
ATGTCCAACATGAAACTGTCATTCAGCACTCCAGAGCAGGCGGTTCGGTT
CTGCAAGAAGAGGGGCTGGAAGTATGAGGTGCGAAGTTAGGATAGGCCTT
TCCCGCTTTAGCTCTACGATTCTAGTATAATAAGTGCATAAGTAGCATAA
GGAACTTTGTCAAAATATATACCGTTCCGAAAAAAAAATACAAAGACGGT
ACCTCGGTTTTCGATTTCGCAGTAATTTCAGGTACAAAATGGTGCAGGTG
TAATTCGCGATAATTTTTGGGGTAGGTTCTGCTAATACTTGGAAGCATGG
TGTTATTTATTTATGGCCAGCACGCTTATGTACGGATTTTCGTGAGTGAT
ATTTAGAAAAACAATGTAAAAATTATACTGGGGAAAGAAAGGCCTATCTA
CGTTGTGTGCGTAGGCAAGATCTTGTTTTCCTGGGTAATCCTGACGCGCC
TGATATACGGTGCGACGTGCTTCGTGCCATGCCAACGTAAAAATACGACA
ACAGTATCATAGTGCGATAATGTCGCAAAGTTTTGGCATTGTACCTGTTG
CGGATGCCGCCTTCAAGCCTTGTGTTGTGTTGTGTCCATGCGAATAGGTT
TCGCGCTTTTGCTAGAGCTGGCATCCTTGTAGAGGTGTTGACTTTCTAAT
ATTACGGGTGTATTCGTTAGGGTAAGGGTTAGGGTTAGTGGTTGAAACTG
CTGAATAGCCCACGTTGTTACCAATCATACATCATACATCTAATAAAACG
AACATCCTAAAGATCCGACCTAAAAAAAACAACAATGGTTGTTAAGGCGG
TTCAAATATTAGCTCCTCCCAACAACAAAAAGAAAAAAAAAATATATATA
TATATATATATATATATATATATATACTCGTGTATATGTTGAAAATAAAT
TATTGATATTAATACTGTAGTTATTATTTGAAAAAAGGACGACGTTTTTG
ATGTGAGCGGGATTTAAAAAAAAGTGTGACAAACGTGACCGCTTTATCAC
ATACGAAGTATTGCATTAAGTATGACAATAAAAATTGGGATTGCGCTCTC
CCTTGCTTTTCAGGTCAAGGCCCCATCGAAGCGCGAGGCTGTCTTCGGCA
AGTTCGCGTACTCGCACAACTTTTTGCCGCACAACGTCGAGCATGAAATC
AAGATCAATGGCACCAAGACCGAGTAAGTGACATACAAGCCGCCGCAATT
CGATGAAATAAAAAAGTCGACACAAGAGAAGAAATTGCTGCACCCTTCTC
GCGATAAAAATGTATGATAGGCACGTATACCGTAGTGGGGAGGGGGAAGG
AATGCCTGTTATGTGACCCCGGATCTGAGTTACGAAGAGAGGTGGAGCTG
GAGAAATAATAGGGCGAAGAAAATAAATGGGACGGAAAAATAAAGAAATA
ACGAAACAAGAAAAAAAAACATACATTACAAGTGTGAGGTTGAGGCGCAA
AAAGATAAGGGTGGGTAACTATCGCCGCGGTGGCCCCTAATAAATAGCCC
ACAATACGCCCCAACACCCACGTTGGCGCCTGCATCTTACGAACTGTCAC
TGCGTTAATCCCGGATCCGATTCGTTTAAACAACGCGGTTGACCACAGGC
TTTCCATCGATGCCATACTTGTAATATTCAGATAATAATTGGGGCAAGGG
TAAGGATAGACCATCTCCCGCCTTCACCCTTTTTCAGGCCTATTTATTAG
GGGCCACCGTGATAGTTCGTATAACTCGGGTGTTGGGCACAGTATATCGG
ACATGATGGTGGTCATCGACGCACATGATGGGGTACGTAGAGAAAAGAGT
TCAAGAAGTTGTATTCACAGGGCACAAGGAGGCACAGGACAAAACCATGA
TAATGCCAGATGCCAAGCCCAATATATAGGAAACCCGGGGGAAGGGGAAC
CATGCGGTGCAACTACAGCAGTGTAACTGTAACATCTACTCGAACCAATA
CAGCCGGTACACCAGTACCACGAACATAGCTCTCGGCGGCTATGCATGCT
GCTGTTGACTCATGAGTTATACGTTAAGGAAACTTTTTTTAATATACTAC
TTGTAGCCATTTCAATACACTACTTGTCGCTGTTTCAATACACTACTTGT
AGTCATTTCAATACACTACTTGTGGATGTATTACTTGTAGCCATTTCAAT
ACGCGATTTGTTATCATTTCAATACTCTACTGGTAGCTACTTCAATACAC
TATACTTGTACTTGTAGACATTTTAATACACTACCGCTGTGATATTGTAT
TACTACAGTACAGTAGAATTGTGTTGTTTTTTTGGAGGGGGTTTTCGGGC
GATCACGTACTATTTATTATTATATTATTATTATTATTCTTGTTTCCGTC
ACAGTAGCCCGATCGCGCGGACCCGTGGTCACAAAGGTAGGCACCGTTTT
TTACCGAATAAAACCGACCCCTCCGGCCCCTCTCCACAAGCTCAATCTAC
CCCCACTGATTTCATATCTTCCGCGACTTTGGAGATAACATTGGCTAAGA
GAAGAGGCAGACACACGAAAGTGTATGGTCTCGTCAGTTTACTATGCTGT
GGTATTTCCCGGATTATGTTCCGGATAGGAAGGTCCTTTCTGTCGTCGTC
CCGTTTTTTTTTTCTGCTGTTAAGTGATGCGGCTGCATGCTCGTGTCCCT
TAATATGTTGTACGGAGTTAGCCCCGTGTCGGCAATATCTCTGGCTCTAC
TGGTAGCTGTGTTTGTACTGTACATTAGTAGTAGTAGTATAATAGCGGTC
AAAATTCTCCAGTAGAAAAACTCCGGTCGAAAAAAGATGGCCGATTTTTG
GAATAGCCGCAACAGAGAAGTAAACCCTAAAGAGGGAATACGTGGTGGAG
GTGAGCCAATACCGCGACCATTTAGCGTTAACCATTTGATTATATACGCG
GCACGCCTCATTATTCCGTGTGAGGTTGTCGTGGGGATTGTGGACCGGCC
TGCGTTAACCATGTAGCAGTTCACCCCTCCGTACCATTATAAAACATCAG
CACAGGTGCAGATTTACTTTTTATTAGGAAAGCGGGTGAGAATATTATTC
AATGTTCGATCAAAAGCGGCTTCGATGGATCCTTGGCGCCGTGTATGGGC
GTTCCAGCCGTTTCTTGCTTTTTTGCCATTTTTTTGTGGTATTTCTTGGT
CTTTTTGTGTCATTTTCTTGTCCTAAATTATTTCGTGTATTTTGTCGTAT
AATTTGTCCATTGTATTTACACTTGTGTTGCAAAATACATGCGCACGTTT
TCATTTTGTGATCATTTTTTCAACTTCACTCTGCTTGACCCTTCTTTTCT
TCATCTGATGCACCCATGGTTTGTACCACGGCAAATGAATGCCCCGACGC
TCTTAACGATGGATGAATCAATCAATCAATCAATCAATCAATCAATCAAT
CAATCCCAGGCATTTCAAGTTTCCGACGGCTGGAGCGAGCCACTACGACC
GACCACTAAACTTCGAAGGGACCAGTACAGTACGCCAACACGGCAACCCG
GAGCAAGCATGACCGAGCAAGCGTTTTCCCAGCGGCAATGTGTACAACCA
AGTCTTGGGGGTTTGTTGAGTGCAGCAAAAGTACACATGGGGGTTGTGGT
GGGTCACATACTCGGGTTTCCAGAACCTATTATTGGGCGGTATGGGTCTT
CGGGTTGGTATGGTGGTGTTGGTTTGGTATTAATCTTGAGGTTGAAATGG
ATCTTTAGGTTGGCATCGGTCCTTAGGTTGGTATGGCCGGTCGTTACGAG
TGTCGCGTGCGTGTCCGTGTCGCTTCTACGTGGCTTTGAAGATGATTGGG
TTGTCGAGGGACGCCGGGG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1:2896431..2904399-

>mRNA_D-herbacea_F_contig1.116.1 ID=mRNA_D-herbacea_F_contig1.116.1|Name=mRNA_D-herbacea_F_contig1.116.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1506bp|location=Sequence derived from alignment at D-herbacea_F_contig1:2896431..2904399- (Desmarestia herbacea DmunF female)
ATGCTCGCTGCTCGCGCTTCTAGTGCCGCTTCCTTGAGGATAGTGCGGTC
CGGCACGTCGCTTTCCGTTGCCGCCGGCCGCGCGGCCTCGCGACCATTCA
GCGCAAAGCCCCCGGACAAACCGGTTCCTACGCCCGAAGAGGAAGCAGAG
AGACAGGCGGTACAGATGCGTGCCTTAGACACAGTTCTCAAGACCAAGAA
CGCAGGTGAGGATGCTCGCTGCTCGCGCTTCTAGTGCCGCTTCCTTGAGG
ATAGTGCGGTCCGGCACGTCGCTTTCCGTTGCCGCCGGCCGCGCGGCCTC
GCGACCATTCAGCGCAAAGCCCCCGGACAAACCGGTTCCTACGCCCGAAG
AGGAAGCAGAGAGACAGGCGGTACAGATGCGTGCCTTAGACACAGTTCTC
AAGACCAAGAACGCAGGTGAGGTGTCGCCACCGGTGTACGCTGAACCGGC
GGACCCTTTCCCGGAAAACCCGGCGGAGGCGTTGGCGTTGGATCCTCTGC
CGCCCTCGGTGGCCGGGCGTAAGGTTATCATCGCGCAGAAGAGCAAGCCG
GCCACGACGACGGGAGACGGGGGCGGGCTTTACTGCTGGAACCTTACCTT
CAAGCACCAGGCAAGAAACGAACAATGTCGCCACCGGTGTACGCTGAACC
GGCGGACCCTTTCCCGGAAAACCCGGCGGAGGCGTTGGCGTTGGATCCTC
TGCCGCCCTCGGTGGCCGGGCGTAAGGTTATCATCGCGCAGAAGAGCAAG
CCGGCCACGACGACGGGAGACGGGGGCGGGCTTTACTGCTGGAACCTTAC
CTTCAAGCACCAGGCAAGAAACGAACAAGAGCGTTGGTCCAACCCTCTGA
TGGGGTGGACAAGCACCTCCGACCCCATGTCCAACATGAAACTGTCATTC
AGCACTCCAGAGCAGGCGGTTCGGTTCTGCAAGAAGAGGGGCTGGAAGTA
TGAGGAGCGTTGGTCCAACCCTCTGATGGGGTGGACAAGCACCTCCGACC
CCATGTCCAACATGAAACTGTCATTCAGCACTCCAGAGCAGGCGGTTCGG
TTCTGCAAGAAGAGGGGCTGGAAGTATGAGGTCAAGGCCCCATCGAAGCG
CGAGGCTGTCTTCGGCAAGTTCGCGTACTCGCACAACTTTTTGCCGCACA
ACGTCGAGCATGAAATCAAGATCAATGGCACCAAGACCGAGTCAAGGCCC
CATCGAAGCGCGAGGCTGTCTTCGGCAAGTTCGCGTACTCGCACAACTTT
TTGCCGCACAACGTCGAGCATGAAATCAAGATCAATGGCACCAAGACCGA
GCATTTCAAGTTTCCGACGGCTGGAGCGAGCCACTACGACCGACCACTAA
ACTTCGAAGGGACCAGTACAGTACGCCAACACGGCAACCCGGAGCAAGCA
TGAGCATTTCAAGTTTCCGACGGCTGGAGCGAGCCACTACGACCGACCAC
TAAACTTCGAAGGGACCAGTACAGTACGCCAACACGGCAACCCGGAGCAA
GCATGA
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