mRNA_D-herbacea_F_contig113.1037.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig113.1037.1
Unique NamemRNA_D-herbacea_F_contig113.1037.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig113.1037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig113contigD-herbacea_F_contig113:695140..698322 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size473
Cds size471
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig113.1037.1prot_D-herbacea_F_contig113.1037.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig113 695140..698322 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927535.754701-CDS-D-herbacea_F_contig113:695139..6952591622927535.754701-CDS-D-herbacea_F_contig113:695139..695259Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 695140..695259 +
1690790221.018098-CDS-D-herbacea_F_contig113:695139..6952591690790221.018098-CDS-D-herbacea_F_contig113:695139..695259Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 695140..695259 +
1622927535.7664053-CDS-D-herbacea_F_contig113:696550..6966981622927535.7664053-CDS-D-herbacea_F_contig113:696550..696698Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 696551..696698 +
1690790221.0304434-CDS-D-herbacea_F_contig113:696550..6966981690790221.0304434-CDS-D-herbacea_F_contig113:696550..696698Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 696551..696698 +
1622927535.776464-CDS-D-herbacea_F_contig113:698119..6983221622927535.776464-CDS-D-herbacea_F_contig113:698119..698322Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 698120..698322 +
1690790221.0398273-CDS-D-herbacea_F_contig113:698119..6983221690790221.0398273-CDS-D-herbacea_F_contig113:698119..698322Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 698120..698322 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig113.1037.1

>prot_D-herbacea_F_contig113.1037.1 ID=prot_D-herbacea_F_contig113.1037.1|Name=mRNA_D-herbacea_F_contig113.1037.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=157bp
ASDYTHRSGQAMAGSEAFSPYALSVGILIGVFAGRLDDFQDVLEPGDSDW
EGRPGNFVPPPPSPVHYRLLASVITSQLQAIEQAEEKTLGHLLDEILEGL
SSCPKYARSVSDYLGSRLAAVRSVDDLFDLTAYLGTMLSTPGTASSAHGR
GRQAEF*
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mRNA from alignment at D-herbacea_F_contig113:695140..698322+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig113.1037.1 ID=mRNA_D-herbacea_F_contig113.1037.1|Name=mRNA_D-herbacea_F_contig113.1037.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=3183bp|location=Sequence derived from alignment at D-herbacea_F_contig113:695140..698322+ (Desmarestia herbacea DmunF female)
GCAAGCGACTACACACACCGCAGCGGACAGGCTATGGCTGGATCCGAAGC
CTTCTCTCCGTATGCTCTATCTGTGGGCATTCTTATCGGCGTTTTCGCGG
GAAGATTGGACGATTTTCAGGTTTGTTGTAACACCAACTTGGTGTTGGGT
CTTTGAAACATGTACGAGTAGTATGATAGGAGTAGAAGAGCTCTCTAGCA
GAAGCTTGCCCGTCTGCTACAAGTCGCTAAGTGAAGTATGTGCGTATGAT
CTTGCTGCTGGATTAATCTAGGAGTGTAGTTTGGGTGTGTGTGCTTGTCG
TTTTCTGTGTGTGCTGTGCTGAGTCTCTACTCGTTGTCAAGTATGCGGTA
CGTAAAAACGCTCCGCATGTTGTTTTGCAGTTGGCCGTTAGCCATGGTCC
GTGTTTAGCTCTTTACCACCTGGTAGTCACCAGATCATCACCCAATGTTG
GCAACTCCTTATAGTACGAGTGGCAGGTGTCGGCACATTTTCACACAAAC
CTGAAGGGAATTCTTACGCGTTTGCCTCGCCATATGCATGATAGTGCTTC
CGAGTGCCACCACTCGCATTGTGAAGAAACGATACTGTACTACGAGTACT
ACTGTTGTAGTGGCAATATCGGCCTCTGGAGGCGAGAGGCGTGTACGCAC
TACATCTGTGTCTGCCAACTGCCAACTGGGAGTGTGAGCTTAAGATGGGG
ACTCTCCTCAGAGCCAAGAAGGCACGGTGGTGTCAGACTCGTACTCGTAG
GATTTGAAATATTTCTCTTCACCAAGGCACCAGCCGTGACGTTCTAAACT
GGTTCGAGACCCAGGGGGTAACCGCCAACTTCACTGTCTGTGTGATATCA
TACTCCGGTCGCGCGTATTCTTATTTTTTCTTACAAAGACATCAGCCGTG
ACGTTCCAAACTGGTTCGGGGGCCAGGGGATAATCATCTATCGGTCCTCA
GATAAGGTATAGTCTAGCGCAGTAGCTCCCCTGGGCACTCGTATTCCCAG
GCTCGACAGGATATTGGTAAGGGTAAGTTGGGCCTAATTATCTAACTTGT
CGTGCATATGCGCATCGATTGTCTGTTCTCCAATTACTACTCATACCACC
GTCACGTCTGGAACATCAGCGGTGCGGTTGCCACCTTTTGTACCCGAAAC
AACACGCCTCCGTCTACATGCAGCAATACCTTTGTTTGCGACACGACTAG
GCAAGCAAGTCGCATACCTTTTTTTGTCTCGAACGTCTCGCGCAATTTCC
AGCTCTAACATTTACTTTATTATACTCGTAGGCAGTCACTCATCCACGAC
GACTGACACATCCTTCTCCAGCCGTTGTTGTCCTGCATTACTTACCTCCT
CGTCTCTCGGTGTGATTCAAACCGCGTCGCACCGCATCACGTTTTACTCT
TGTTGTCGAAGGATGTACTGGAGCCCGGAGACAGCGATTGGGAAGGACGA
CCGGGAAACTTCGTCCCTCCCCCCCCATCTCCGGTACACTATCGCCTGCT
TGCATCCGTCATTACGAGCCAGCTGCAGGCTATAGAGCAGGCCGAAGAAA
AGACCTTAGGTGCGAAACATGTGCGGTACAACAAACAGTAGGAGTGTTTG
TTGTTATTGTGGTCTGGAGCTACTATTAAAACTACTGTGTACGTAGCAGC
TTCGCGGCTTTTGTATACAATGTACATGGATGTGCTTCCATTTCGTTGTT
TTGTTTCGTTCTTGCGGCAACTCTTTCCCGCCAAATATTTTTTCGCGCCA
TTTCGCACCTTTTCACTACGTTTGCCTATGATGTAATAATTGCCCTGTAC
GGGTGGGGTGCTCTTATAGCTTACCGGCTCTAGAATCCGATGTGTGGTGT
CGTTGATGGAGATCAGTCGAACGCGATGGCTGCTGGCTGGGGCGGACACC
TTTGAGTGTATGATATTACAGCACAGGGGGCGTAGCAGTGAAGATGGCCA
AGGGCGGTCGAAGGTAAACTGCAGGTCGGCGCCATAGTGCGTCATTCTCG
GCAGAGGTTTCGAGTGGAGCAAACACGGCATATCCACAGCGTATTCGAGA
TACACACACATCTTGTCGGCGGTTTTAAGCTCATAGGAGTCCTTGATGTA
TAATATGTACGTTTGTTTTTGTAAGAAAAATAATAATATGTACGTTGAAG
GGTGGGCATTCTGCTGCTAATGTTGTACTTCTTTCGCCATTGACGGTTGG
GCTGATTGTTGATTGTGGCGAATAACAGACGCACGTTTCCCCGACTCGCC
TAACGTGCAATAATTCGATCACTAGTTTTTGAAAAGGAGTCGCCAAAGTC
TGGCGTTCCCGATGAGACAGACCTCTGTTCCTCATCGCTGATTTCGTCGT
GCGCTCCCGTGTAGCTACTTCCCGTGTAGCTACTTCGAAGTATATAGATA
GCGCGCTCAACCAATCACGGCCGCTGTATGTCCAGCGGTCAATGAATAAT
ATTTCCCAAAATGGCAGAGATTGTCATCGCTTTTGTATCTGGTCGGTGCC
ATAAAAACGGATCTTCTCATGTGCAATCCACCTTCGTATACCAGCCACTG
TCTGTTGTGCGATATGCGAACAAAGAGGAGCGTATGGTTATTTGCCATCA
TAGTAGCACTAACAGTTGTACCGTAGTATTCAACATGACCTGACAGCAAA
CGCAAAGACACGGCAATATTCCTGTACTATATACTTCGAAGTATAGCTCT
ATGCAGTTAATTTAGGTTTTATAGAACCGTTTCCTTTCGCACACGCCTCT
GTTGACGCGCGAGATTTTTTGTTTTGTATTTGAATCTCGCGATTTATGAA
TGTAGGCACGTACCGTACAGTGTGTGCGGGGGGGGGGGCGTCTGCTATGT
GACCCCGGAACTGAGTTACGAAGAGAGATAGAGCTGGACAAAGAATAGGA
CGAAGACATGAAACGGGATGGGAAAAAAAAAAAAAATCGCGTATTTTGAC
CCTCCCAACCGCTCTTTCCCGTGTTCATAGGCCACCTGCTGGACGAGATC
CTGGAGGGGCTGAGTTCTTGCCCCAAGTACGCGCGGAGCGTTTCGGATTA
TCTCGGTAGCCGCCTCGCCGCGGTGCGATCTGTCGACGACCTGTTTGACC
TGACGGCTTACCTGGGCACGATGCTCTCTACACCGGGAACGGCGTCGAGC
GCCCACGGCCGTGGCAGGCAAGCGGAGTTTTAA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig113:695140..698322+

>mRNA_D-herbacea_F_contig113.1037.1 ID=mRNA_D-herbacea_F_contig113.1037.1|Name=mRNA_D-herbacea_F_contig113.1037.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=942bp|location=Sequence derived from alignment at D-herbacea_F_contig113:695140..698322+ (Desmarestia herbacea DmunF female)
GCAAGCGACTACACACACCGCAGCGGACAGGCTATGGCTGGATCCGAAGC
CTTCTCTCCGTATGCTCTATCTGTGGGCATTCTTATCGGCGTTTTCGCGG
GAAGATTGGACGATTTTCAGGCAAGCGACTACACACACCGCAGCGGACAG
GCTATGGCTGGATCCGAAGCCTTCTCTCCGTATGCTCTATCTGTGGGCAT
TCTTATCGGCGTTTTCGCGGGAAGATTGGACGATTTTCAGGATGTACTGG
AGCCCGGAGACAGCGATTGGGAAGGACGACCGGGAAACTTCGTCCCTCCC
CCCCCATCTCCGGTACACTATCGCCTGCTTGCATCCGTCATTACGAGCCA
GCTGCAGGCTATAGAGCAGGCCGAAGAAAAGACCTTAGGATGTACTGGAG
CCCGGAGACAGCGATTGGGAAGGACGACCGGGAAACTTCGTCCCTCCCCC
CCCATCTCCGGTACACTATCGCCTGCTTGCATCCGTCATTACGAGCCAGC
TGCAGGCTATAGAGCAGGCCGAAGAAAAGACCTTAGGCCACCTGCTGGAC
GAGATCCTGGAGGGGCTGAGTTCTTGCCCCAAGTACGCGCGGAGCGTTTC
GGATTATCTCGGTAGCCGCCTCGCCGCGGTGCGATCTGTCGACGACCTGT
TTGACCTGACGGCTTACCTGGGCACGATGCTCTCTACACCGGGAACGGCG
TCGAGCGCCCACGGCCGTGGCAGGCAAGCGGAGTTTTAAGCCACCTGCTG
GACGAGATCCTGGAGGGGCTGAGTTCTTGCCCCAAGTACGCGCGGAGCGT
TTCGGATTATCTCGGTAGCCGCCTCGCCGCGGTGCGATCTGTCGACGACC
TGTTTGACCTGACGGCTTACCTGGGCACGATGCTCTCTACACCGGGAACG
GCGTCGAGCGCCCACGGCCGTGGCAGGCAAGCGGAGTTTTAA
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