mRNA_D-herbacea_F_contig113.1010.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig113.1010.1
Unique NamemRNA_D-herbacea_F_contig113.1010.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig113.1010.1 vs. uniprot
Match: D7FZ90_ECTSI (Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ90_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 3.600e-33
Identity = 90/210 (42.86%), Postives = 109/210 (51.90%), Query Frame = 1 
Query:    1 MVDLHDLASKGDLEGVRKFLQRSASKVNKTSRDGQTALHRGAKGGHVQVCRELIASVASVDLEDKQHRTPLRVAVENNKADVARVLCEAGASTSQAVGP-ERXXXXXXXXXXXXXXXXXXXXXXGAVIEGNPDKWGKLPDEDCATSDIRILIETARRER--------AAGTSKYTPLAATAPPSTGESQLDGAAAASSFTSSPQVPPSCE 603
            MV+LHDLASKGDLEGVRKFL RSA+K+N T + GQT LH  AKGGHV+VCR                              VA+VLCEAGASTS  +   +                       GA I+ + ++WG LP+EDC  S+IR LI  AR+ER         AG+S Y P AA+APP   E + +G        SSPQ PPS E
Sbjct:    1 MVNLHDLASKGDLEGVRKFLARSAAKINNTDKAGQTPLHIAAKGGHVEVCRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAQVLCEAGASTSAGLQTSDGRSPLHIAANKGFVECAEVLLQHGAPIDTSRNRWGNLPEEDCVVSEIRTLIAAARQERDAAGPVAGVAGSSPYNPYAASAPPPM-EERKEGVGFPPGC-SSPQAPPSFE 208
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BLAST of mRNA_D-herbacea_F_contig113.1010.1 vs. uniprot
Match: UPI0018D020BF (putative ankyrin repeat protein RF_0381 n=1 Tax=Plutella xylostella TaxID=51655 RepID=UPI0018D020BF)

HSP 1 Score: 55.5 bits (132), Expect = 6.240e-6
Identity = 31/89 (34.83%), Postives = 48/89 (53.93%), Query Frame = 1 
Query:    7 DLHDLASKGDLEGVRKFLQRSASKVNKTSRDGQTALHRGAKGGHVQVCRELIASVASVDLEDKQHRTPLRVAVENNKADVARVLCEAGA 273
            D       GDL  V+  L+     +N    +G TALH  +  G++ +   L+   A V+LED QHRTPL+VA++   A ++R+L +  A
Sbjct:    8 DFFKAVKNGDLATVQTLLESKQVSINDRDVNGCTALHLCSDLGNLHLASLLLKQGADVNLEDDQHRTPLKVALDRYHARLSRLLIQNNA 96
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BLAST of mRNA_D-herbacea_F_contig113.1010.1 vs. uniprot
Match: A0A1B8E5R4_9PEZI (Protein SSH4 n=1 Tax=Pseudogymnoascus sp. 23342-1-I1 TaxID=1524831 RepID=A0A1B8E5R4_9PEZI)

HSP 1 Score: 56.6 bits (135), Expect = 7.120e-6
Identity = 35/93 (37.63%), Postives = 53/93 (56.99%), Query Frame = 1 
Query:   37 LEGVRKFLQRSASK--VNKTSRDGQTALHRGAKGGHVQVCRELIASVASVDLEDKQHRTPLRVAV---ENNKADVARVLCEAGASTSQAVGPE 300
            LE VR +LQ  A+K   N    DGQTA+HR   GG ++V +ELI   A ++++ K  RTPL +A+     ++  +ARVL +     S+   P+
Sbjct: 1734 LEVVRYYLQDHANKDLPNIPDSDGQTAVHRSTIGGSLRVMKELIWHKADLNVQGKDGRTPLHIAITMSRMSRMSMARVLLDGNIDISKHSSPD 1826
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BLAST of mRNA_D-herbacea_F_contig113.1010.1 vs. uniprot
Match: A0A1G6W2L5_9BACT (Ankyrin repeat-containing protein n=1 Tax=Algoriphagus faecimaris TaxID=686796 RepID=A0A1G6W2L5_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 2.460e-5
Identity = 33/99 (33.33%), Postives = 55/99 (55.56%), Query Frame = 1 
Query:   10 LHDLASKGDLEGVRKFLQRSASKVNKTSRDGQTALHRGAKGGHVQVCRELIASVASVDLEDKQ--HRTPLRVAVENNKADVARVLCE--AGASTSQAVG 294
            LH+LAS GD++G++K L ++   ++  S DG T L   A  GHV++ R L+   A+ ++        TPL  A  ++  ++A++L E  A  +T Q  G
Sbjct:   62 LHELASIGDVDGIKKILSKNPQLIDSFSADGFTPLGLAAYFGHVELVRLLLIQNANPNVPSNNSFRVTPLHSACASSNLEIAKLLIEYHADVNTKQQKG 160
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BLAST of mRNA_D-herbacea_F_contig113.1010.1 vs. uniprot
Match: A0A4Q7DM71_9RICK (Uncharacterized protein n=2 Tax=Rickettsiales endosymbiont of Peranema trichophorum TaxID=2486577 RepID=A0A4Q7DM71_9RICK)

HSP 1 Score: 54.3 bits (129), Expect = 3.710e-5
Identity = 31/85 (36.47%), Postives = 49/85 (57.65%), Query Frame = 1 
Query:   31 GDLEGVRKFLQRSASKVNKTSRDGQTALHRGAKGGHVQVCRELIASV-ASVDLEDKQHRTPLRVAVENNKADVARVLCEAGASTS 282
            G+LE V+K+L      +N  +  G+TALH+ A  G+V++C+ L+     +VD  D    TPL  AV +   +V ++L +  ASTS
Sbjct:   15 GELEEVKKYLDHGVVNINDANTIGETALHKAAGAGNVEMCKLLLGYPNIAVDYADVAGCTPLCCAVFSGYEEVVKLLLDNKASTS 99
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BLAST of mRNA_D-herbacea_F_contig113.1010.1 vs. uniprot
Match: A0A2V5MN55_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V5MN55_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 6.210e-5
Identity = 32/89 (35.96%), Postives = 50/89 (56.18%), Query Frame = 1 
Query:   10 LHDLASKGDLEGVRKFLQRSASKVNKTSRDGQTALHRGAKGGHVQVCRELIASVASVDLEDKQHRTPLRVAVENNKADVARVLCEAGAS 276
            LH  A  G  + V + L+R A KVN  +RDG T L+  A  G       L+ + A V + D +  TPL+VA++ ++ ++A +L + GAS
Sbjct:  399 LHTAAYNGQPQAVEELLRRGA-KVNAQNRDGHTPLYDTALQGTKDTLLLLLQAKADVSIPDTKGITPLKVAIDGDRPEIAELLRQWGAS 486
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BLAST of mRNA_D-herbacea_F_contig113.1010.1 vs. uniprot
Match: D8UHC5_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UHC5_VOLCA)

HSP 1 Score: 52.8 bits (125), Expect = 9.830e-5
Identity = 28/63 (44.44%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:    7 DLHDLASKGDLEGVRKFLQRSASKVNKTSRDGQTALHRGAKGGHVQVCRELIASVASVDLEDK 195
            +LH  A  GD+  V+  +Q+S   +++TSR+GQTALH  A  G   V REL+A  A   L+DK
Sbjct:   14 ELHAAADAGDVAKVQHAVQKSPQDLDRTSREGQTALHLAAAKGFDVVVRELLARRAKTTLQDK 76
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig113.1010.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FZ90_ECTSI3.600e-3342.86Chain A, 4ank: A Designed Ankyrin Repeat Protein W... [more]
UPI0018D020BF6.240e-634.83putative ankyrin repeat protein RF_0381 n=1 Tax=Pl... [more]
A0A1B8E5R4_9PEZI7.120e-637.63Protein SSH4 n=1 Tax=Pseudogymnoascus sp. 23342-1-... [more]
A0A1G6W2L5_9BACT2.460e-533.33Ankyrin repeat-containing protein n=1 Tax=Algoriph... [more]
A0A4Q7DM71_9RICK3.710e-536.47Uncharacterized protein n=2 Tax=Rickettsiales endo... [more]
A0A2V5MN55_9BACT6.210e-535.96Uncharacterized protein n=1 Tax=Verrucomicrobia ba... [more]
D8UHC5_VOLCA9.830e-544.44Uncharacterized protein n=1 Tax=Volvox carteri f. ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig113contigD-herbacea_F_contig113:260800..262681 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score135.2
Seed ortholog evalue3.4e-29
Seed eggNOG ortholog2880.D7FZ90
KEGG koko:K15261
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
EC2.4.2.30
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons3
Model size606
Cds size606
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig113.1010.1prot_D-herbacea_F_contig113.1010.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig113 260800..262681 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927532.0612006-CDS-D-herbacea_F_contig113:260799..2609301622927532.0612006-CDS-D-herbacea_F_contig113:260799..260930Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 260800..260930 +
1690790219.0906453-CDS-D-herbacea_F_contig113:260799..2609301690790219.0906453-CDS-D-herbacea_F_contig113:260799..260930Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 260800..260930 +
1622927532.0786116-CDS-D-herbacea_F_contig113:261827..2620941622927532.0786116-CDS-D-herbacea_F_contig113:261827..262094Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 261828..262094 +
1690790219.1019127-CDS-D-herbacea_F_contig113:261827..2620941690790219.1019127-CDS-D-herbacea_F_contig113:261827..262094Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 261828..262094 +
1622927532.0978594-CDS-D-herbacea_F_contig113:262473..2626811622927532.0978594-CDS-D-herbacea_F_contig113:262473..262681Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 262474..262681 +
1690790219.111238-CDS-D-herbacea_F_contig113:262473..2626811690790219.111238-CDS-D-herbacea_F_contig113:262473..262681Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig113 262474..262681 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig113.1010.1

>prot_D-herbacea_F_contig113.1010.1 ID=prot_D-herbacea_F_contig113.1010.1|Name=mRNA_D-herbacea_F_contig113.1010.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=202bp
MVDLHDLASKGDLEGVRKFLQRSASKVNKTSRDGQTALHRGAKGGHVQVC
RELIASVASVDLEDKQHRTPLRVAVENNKADVARVLCEAGASTSQAVGPE
RRTPLHVAAHNGFIGCAEVLVQHGAVIEGNPDKWGKLPDEDCATSDIRIL
IETARRERAAGTSKYTPLAATAPPSTGESQLDGAAAASSFTSSPQVPPSC
E*
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mRNA from alignment at D-herbacea_F_contig113:260800..262681+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig113.1010.1 ID=mRNA_D-herbacea_F_contig113.1010.1|Name=mRNA_D-herbacea_F_contig113.1010.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1882bp|location=Sequence derived from alignment at D-herbacea_F_contig113:260800..262681+ (Desmarestia herbacea DmunF female)
ATGGTCGATCTCCACGATCTGGCGAGTAAAGGGGACTTGGAGGGCGTCCG
TAAGTTCCTCCAACGCTCTGCGTCGAAGGTGAACAAGACGAGTCGGGACG
GGCAGACCGCACTTCACCGCGGTGCCAAGGGGTAAGATGTGATTTGGCAG
CAAAACATGTAAAATGCACCTGGCTACAAAGTATCTCTTTCTGCTTTGGT
TGCACTACTGAACTATACCCCGAAGTATGTTACAAAAATACGGGGGCTCT
TAGAGGTCAAGGTTGGAAGAATGCGTGTAGCACTGAATGGTCATGTCATG
ATGGTGAGGGGAAACAACTCCGAGCATCAGAGCTAAACACGACGAAAGCC
ATCATTTTGAAAAGAGAGAGAGGGAGCTAAACGACTAAACGAAATGGAAA
GAGGGATTGGTGAAACGGAAAGCCGAGGTGATGCAGAGACGGAGGCTGCG
AAGGCAGCGGAGGATATTCGGTGAAAGAAAACAGAGGGTGTCGAGGAAGG
TAAACGACCGAGGAAGAAGGATAGAAAGGCGGCCCAGAAACCGCGACAAA
AATCCAAGGCATGCATCGGAGTAGGAAGGGGAGAAGAGTCCCACTCTGTG
ACCCTGAATTCGAATCAAAAGCGTGATAATGGGACGGCAACAGAGTTGGA
TGGGGTAACATCCCGGTACGAGTAGTGTCTGGATATTATCTCCTCCTTGG
GACTGATTTTTGCTGTGCTACAACAGGTGGGGCGAGGCCCCCATGCGGGA
AGAGGTGTTGAATCCAAAGGTTATTCTGTTCGATAGAAGAAGCCCACCAC
TACACCGATACGTCGGCGAGGCAACCCACACCGTTCCAACGCTGAGTTTG
ACGGCGCTACTTGTGCATACTGTATCCATCTAGTACGAGTGCACGCTCGA
CGATAGTTCGAAAAAATTGGTTGAGTTCACAATTCTCCGTACAAGCGATC
AAGCGCCTAGAAAATTATAACCTTAATGCTCCAAGGCTAACTCCACCCTC
AACTCCGCGAAACCAACTCTTTTCTCAGGGGTCATGTCCAGGTATGCCGG
GAGCTCATCGCTTCTGTCGCAAGCGTCGACCTCGAAGACAAGCAGCACCG
TACGCCGCTGAGGGTCGCGGTCGAGAACAACAAAGCCGACGTCGCCAGGG
TACTATGCGAAGCAGGCGCATCGACGAGCCAGGCGGTAGGACCAGAGCGT
CGCACTCCCCTTCACGTCGCTGCACACAACGGTTTCATCGGGTGTGCTGA
AGTGCTTGTGCAACACGGAGCCGTGATCGAGGGAAACCCTGACAAGTGAG
TAGCATGAAAAGTTGAAACGCCCCAGCGGAAAGCAAAGGTGCACCGTCCT
GCCGGAGTGCTGTTTCGGCGAGAAAAAGTGCATACTTCGAAGCGCACATA
TCGTACTTCCGGGACCGATGTTAAACGCGATTATGGTTGTATTCTTAGCC
ATGCACGTTGTTGTGTCTAGTATCGTAAGTGAAAAGCCACGCTTATCGAT
TATTCCACCACCGTGCCTCGAGCATCCAATAAAGAGGTAAGCTAGCTGCC
GGTAACAGATCACGTCGGCGTGCAATGACTCTGAATTAAGCAAACCTCGC
ATACGTGGACACCAAGAACAAGATATTCGGGACCGAGACACTACTGTACT
GTGGCATCTCCCACTTATTTGCAGGTGGGGAAAGCTACCCGACGAGGACT
GTGCTACTTCCGATATCCGTATCCTCATTGAAACTGCGCGCAGAGAGCGT
GCAGCTGGGACGAGCAAATATACACCGCTAGCGGCCACGGCCCCACCATC
GACAGGCGAATCCCAGCTAGATGGGGCTGCGGCAGCATCATCGTTTACGT
CGTCACCACAAGTTCCTCCGTCGTGTGAGTAA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig113:260800..262681+

>mRNA_D-herbacea_F_contig113.1010.1 ID=mRNA_D-herbacea_F_contig113.1010.1|Name=mRNA_D-herbacea_F_contig113.1010.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1212bp|location=Sequence derived from alignment at D-herbacea_F_contig113:260800..262681+ (Desmarestia herbacea DmunF female)
ATGGTCGATCTCCACGATCTGGCGAGTAAAGGGGACTTGGAGGGCGTCCG
TAAGTTCCTCCAACGCTCTGCGTCGAAGGTGAACAAGACGAGTCGGGACG
GGCAGACCGCACTTCACCGCGGTGCCAAGGGATGGTCGATCTCCACGATC
TGGCGAGTAAAGGGGACTTGGAGGGCGTCCGTAAGTTCCTCCAACGCTCT
GCGTCGAAGGTGAACAAGACGAGTCGGGACGGGCAGACCGCACTTCACCG
CGGTGCCAAGGGGGGTCATGTCCAGGTATGCCGGGAGCTCATCGCTTCTG
TCGCAAGCGTCGACCTCGAAGACAAGCAGCACCGTACGCCGCTGAGGGTC
GCGGTCGAGAACAACAAAGCCGACGTCGCCAGGGTACTATGCGAAGCAGG
CGCATCGACGAGCCAGGCGGTAGGACCAGAGCGTCGCACTCCCCTTCACG
TCGCTGCACACAACGGTTTCATCGGGTGTGCTGAAGTGCTTGTGCAACAC
GGAGCCGTGATCGAGGGAAACCCTGACAAGGGTCATGTCCAGGTATGCCG
GGAGCTCATCGCTTCTGTCGCAAGCGTCGACCTCGAAGACAAGCAGCACC
GTACGCCGCTGAGGGTCGCGGTCGAGAACAACAAAGCCGACGTCGCCAGG
GTACTATGCGAAGCAGGCGCATCGACGAGCCAGGCGGTAGGACCAGAGCG
TCGCACTCCCCTTCACGTCGCTGCACACAACGGTTTCATCGGGTGTGCTG
AAGTGCTTGTGCAACACGGAGCCGTGATCGAGGGAAACCCTGACAAGTGG
GGAAAGCTACCCGACGAGGACTGTGCTACTTCCGATATCCGTATCCTCAT
TGAAACTGCGCGCAGAGAGCGTGCAGCTGGGACGAGCAAATATACACCGC
TAGCGGCCACGGCCCCACCATCGACAGGCGAATCCCAGCTAGATGGGGCT
GCGGCAGCATCATCGTTTACGTCGTCACCACAAGTTCCTCCGTCGTGTGA
GTAAGTGGGGAAAGCTACCCGACGAGGACTGTGCTACTTCCGATATCCGT
ATCCTCATTGAAACTGCGCGCAGAGAGCGTGCAGCTGGGACGAGCAAATA
TACACCGCTAGCGGCCACGGCCCCACCATCGACAGGCGAATCCCAGCTAG
ATGGGGCTGCGGCAGCATCATCGTTTACGTCGTCACCACAAGTTCCTCCG
TCGTGTGAGTAA
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