mRNA_D-herbacea_F_contig111.955.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig111.955.1 vs. uniprot
Match: A0A6H5JV79_9PHAE (Cupin type-1 domain-containing protein n=6 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JV79_9PHAE) HSP 1 Score: 314 bits (804), Expect = 1.070e-99 Identity = 151/190 (79.47%), Postives = 168/190 (88.42%), Query Frame = 1
Query: 19 LQQRITMFNPEDFAYSLGGPGPDNLVDGIQFRGVNVNQLPALEGQGISMALVNLDPCAINLPHVHPRATEMLYVIKGEQLRVAFVEENGGEGAVMNDLYQGDVAFFPQGLIHYQQNLDCQPATFLAALNSEDAGAVTITTLFFELPTEAIQASLNFESEKVQELIDSLPDAPALARQQCLQRCGLDKDDN 588
+QQ+IT++NPEDF +SLGGP PD LVDG Q R VNQLPAL+GQGISM LVNLDPCAINLPH+HPRATEM+YVIKGEQLRVAFVEENGGEGAV+NDL QGDVAFFPQGLIHYQQNLDC+PATFLAALN+ED GA+TITT FFELP EAIQAS+NFE +Q LI+SLPDAPA ARQQCLQRC + + N
Sbjct: 29 VQQQITLYNPEDFVFSLGGPEPDALVDGFQLRTAVVNQLPALDGQGISMGLVNLDPCAINLPHIHPRATEMVYVIKGEQLRVAFVEENGGEGAVVNDLAQGDVAFFPQGLIHYQQNLDCEPATFLAALNNEDPGAITITTRFFELPLEAIQASVNFEEPVLQNLIESLPDAPAAARQQCLQRCRMAEPGN 218
BLAST of mRNA_D-herbacea_F_contig111.955.1 vs. uniprot
Match: D8LDW6_ECTSI (Cupin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDW6_ECTSI) HSP 1 Score: 295 bits (754), Expect = 2.380e-92 Identity = 140/184 (76.09%), Postives = 158/184 (85.87%), Query Frame = 1
Query: 22 QQRITMFNPEDFAYSLGGPGPDNLVDGIQFRGVNVNQLPALEGQGISMALVNLDPCAINLPHVHPRATEMLYVIKGEQLRVAFVEENGGEGAVMNDLYQGDVAFFPQGLIHYQQNLDCQPATFLAALNSEDAGAVTITTLFFELPTEAIQASLNFESEKVQELIDSLPDAPALARQQCLQRCGL 573
QQ+ITMFNPEDF ++LGGP PD VDG Q R + Q+PAL+GQGI+MALVNLD C INLPH+HPRATEM YVI GE LRVAFVEENGGEGAV+NDL QGDV FFPQGLIHY+QNL C+P TFLAALN++D GAVTITT FFELP+EAIQASLNFE +Q LI+SLPDAPA AR+QCL+RCGL
Sbjct: 31 QQQITMFNPEDFVFTLGGPEPDAPVDGFQIRAATLGQIPALDGQGIAMALVNLDACTINLPHIHPRATEMQYVINGEHLRVAFVEENGGEGAVVNDLSQGDVTFFPQGLIHYEQNLGCEPVTFLAALNNDDPGAVTITTRFFELPSEAIQASLNFEDPALQRLIESLPDAPAAARRQCLERCGL 214
BLAST of mRNA_D-herbacea_F_contig111.955.1 vs. uniprot
Match: A0A507FDZ0_9FUNG (Cupin type-1 domain-containing protein n=2 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FDZ0_9FUNG) HSP 1 Score: 162 bits (411), Expect = 4.060e-42 Identity = 87/184 (47.28%), Postives = 117/184 (63.59%), Query Frame = 1
Query: 25 QRITMFNPEDFAYSL-GGPGPDNLVDGIQFRGVNVNQLPALEGQGISMALVNLDPCAINLPHVHPRATEMLYVIKGEQLRVAFVEENGGEGAVMNDLYQGDVAFFPQGLIHYQQNLDCQPATFLAALNSEDAGAVTITTLFFELPTEAIQASLNFESE-KVQELIDSLPDAPALARQQCLQRCG 570
QR+ FN EDF L P + G +N+ +PAL QG++M L+NL+PC NLPHVHPRA+E +YVI+G ++V F+EENG + ++NDL QG F PQG IHYQ NL C+ A +AA N+ED G +TI FF+LP AI ASL + +++ L SLP PA ++CL+RCG
Sbjct: 40 QRMKQFNHEDFITDLLHNPKSTEVGKGGSLAKMNLGSMPALARQGLAMVLINLNPCGANLPHVHPRASEAIYVIQGN-VQVGFIEENGAK-VIVNDLVQGQATFIPQGSIHYQVNLGCEQAVMIAANNNEDPGTLTIPAQFFKLPDGAIAASLGGTLDPEIRALNGSLPMNPAPGVEECLRRCG 221
BLAST of mRNA_D-herbacea_F_contig111.955.1 vs. uniprot
Match: A0A0G4EJ88_VITBC (Cupin type-1 domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EJ88_VITBC) HSP 1 Score: 157 bits (398), Expect = 1.750e-39 Identity = 82/175 (46.86%), Postives = 110/175 (62.86%), Query Frame = 1
Query: 55 FAYSLGGPGPDNLVDGIQFRGVNVNQLPALEGQGISMALVNLDPCAINLPHVHPRATEMLYVIKGEQLRVAFVEENGGEGAVMNDLYQGDVAFFPQGLIHYQQNLDCQPATFLAALNSEDAGAVTITTLFFELPTEAIQASLNFESEKVQELIDSLPDAPALA--RQQCLQRCGL 573
F ++ D G G +V+Q PAL G G+S LV+L PC+IN PHVHPRATE++Y+IKG ++ V F EENGG V ND+ +GD AFFP LIH+Q N C+PA F+A LNS+D G TI FF LP + + +L + +V L + LP PAL R++C ++CGL
Sbjct: 147 FDFNTARAEADTNGQGGAVTGASVSQWPALSGHGLSHTLVDLAPCSINTPHVHPRATEIIYIIKG-RVSVGFAEENGGR-IVTNDVKEGDTAFFPHTLIHWQFNPTCEPAQFIATLNSDDGGVQTIAQAFFGLPDDVLATALGVDEYEVAVLREELPAGPALGLQREECRRKCGL 319
BLAST of mRNA_D-herbacea_F_contig111.955.1 vs. uniprot
Match: A0A0G4EG82_VITBC (Cupin type-1 domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EG82_VITBC) HSP 1 Score: 150 bits (380), Expect = 8.090e-38 Identity = 81/180 (45.00%), Postives = 104/180 (57.78%), Query Frame = 1
Query: 40 FNPEDFAYSLGGPGPDNLVDGIQFRGVNVNQLPALEGQGISMALVNLDPCAINLPHVHPRATEMLYVIKGEQLRVAFVEENGGEGAVMNDLYQGDVAFFPQGLIHYQQNLDCQPATFLAALNSEDAGAVTITTLFFELPTEAIQASLNFESEKVQELIDSLPDAPALA--RQQCLQRCGL 573
F DF + +G RG Q PAL G G S + ++ PC+IN PH+HPRATEMLY+ KG +L V F EENGG V ND+ +G+ AFFP LIH+Q N C+PA F+ LNS+D G TI F LP + + +LN + V L D LP+ PAL R QC ++CGL
Sbjct: 69 FGNSDFTFDFNEAQVLTNGEGGGIRGATPVQWPALSGHGFSQTVTDIAPCSINTPHLHPRATEMLYITKG-RLIVGFAEENGGR-IVTNDIKEGNSAFFPHTLIHWQFNPTCEPAQFVGTLNSDDGGVHTIAQALFGLPNDVLATALNVDEYDVTLLHDELPNVPALGLKRDQCRRKCGL 246
BLAST of mRNA_D-herbacea_F_contig111.955.1 vs. uniprot
Match: A0A835YZF9_9STRA (RmlC-like cupin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZF9_9STRA) HSP 1 Score: 146 bits (368), Expect = 7.550e-37 Identity = 80/182 (43.96%), Postives = 106/182 (58.24%), Query Frame = 1
Query: 52 DFAYSLGGPGPDNLVDGIQFRGVNVNQLPALEGQGISMALVNLDPCAINLPHVHPRATEMLYVIKG--EQLRVAFVEENGGEGAVMNDLYQGDVAFFPQGLIHYQQNLDCQPATFLAALNSEDAGAVTITTLFFELPT------EAIQASLNFESEKVQELIDSLPDAPALARQQCLQRCGL 573
DF + L G G + ++ QLP+L G+ ++M + L+PC INLPHVHPRATE+LYV+ E + AFVEENGG + N + G+ AFFPQGL H Q N+ C PAT +AAL S+D G TITT E E + A+L +++ LI PD PA+ +C QRCGL
Sbjct: 9 DFKFDLAGSTATAGNGGGSAQTLSAAQLPSLTGEKVAMVKLVLEPCGINLPHVHPRATEILYVVDAAAEGVLTAFVEENGGR-TIENTVVAGEAAFFPQGLTHMQVNMGCTPATMIAALGSDDFGVQTITTTALEGLAGAEGLGEGLAAALGISQDQLAVLIGGFPDGPAIGAAECRQRCGL 189
BLAST of mRNA_D-herbacea_F_contig111.955.1 vs. uniprot
Match: A0A0L0FR85_9EUKA (Cupin type-1 domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FR85_9EUKA) HSP 1 Score: 149 bits (375), Expect = 1.210e-36 Identity = 75/184 (40.76%), Postives = 114/184 (61.96%), Query Frame = 1
Query: 40 FNPEDFAYSLGGPGP---DNLVDGIQFRGVNVNQLPALEGQGISMALVNLDPCAINLPHVHPRATEMLYVIKGEQLRVAFVEENGGEGAVMNDLYQGDVAFFPQGLIHYQQNLDCQPATFLAALNSEDAGAVTITTLFFELPTEAIQASLNFESEKVQELIDSLPDAPALARQQCLQRCGLDKD 582
F+ EDF + D+L G + VN+ + P ++ G+S + ++ PC INLPHVHPRATE LY+I+G Q+ + FV + +MNDL + V FFP+G +HYQQN++C+ A F++ L++ED G + +++ LP EA+ A+ N + + +L LP+ PA AR +CL RCGLD D
Sbjct: 105 FDNEDFVFDFTDSNKVTVDSLGLGGNIQPVNLEEFPIMQLAGMSYSRFSIGPCGINLPHVHPRATESLYMIEG-QVTLGFVSTE--DRLIMNDLEKDQVTFFPKGHLHYQQNMNCENAEFISILDNEDPGVLVVSSALLSLPDEALTATFNEDQALIAQLRLGLPEGPARARSECLARCGLDMD 285
BLAST of mRNA_D-herbacea_F_contig111.955.1 vs. uniprot
Match: A0A835Z488_9STRA (RmlC-like cupin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z488_9STRA) HSP 1 Score: 145 bits (366), Expect = 6.270e-36 Identity = 80/190 (42.11%), Postives = 108/190 (56.84%), Query Frame = 1
Query: 28 RITMFNPEDFAYSLGGPGPDNLVDGIQFRGVNVNQLPALEGQGISMALVNLDPCAINLPHVHPRATEMLYVIKG--EQLRVAFVEENGGEGAVMNDLYQGDVAFFPQGLIHYQQNLDCQPATFLAALNSEDAGAVTITTLFF------ELPTEAIQASLNFESEKVQELIDSLPDAPALARQQCLQRCGL 573
R N EDF +++ G + ++ QLP+L G+ ++M + L PC INLPHVHPRATE+LYVI E + AFVEENGG + N + G+ AFFPQGL H Q N+ C PAT +AAL S+D G TIT+ E E + A+L +++ L+ PD PA+ +C QRCGL
Sbjct: 53 RAQFVNNEDFTFNIDASKATTGNGGGSAQTLSAAQLPSLTGEKVAMVKLVLQPCGINLPHVHPRATEILYVIDAPAEGVLTAFVEENGGR-TIENTIVTGEAAFFPQGLTHVQVNMGCAPATMIAALGSDDFGVQTITSAALKGLAAAEGLGEGLAAALGIAQDQLALLVGGFPDGPAIGAAECRQRCGL 241
BLAST of mRNA_D-herbacea_F_contig111.955.1 vs. uniprot
Match: A0A836CNU2_9STRA (RmlC-like cupin domain-containing protein n=7 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNU2_9STRA) HSP 1 Score: 145 bits (366), Expect = 6.270e-36 Identity = 79/182 (43.41%), Postives = 106/182 (58.24%), Query Frame = 1
Query: 52 DFAYSLGGPGPDNLVDGIQFRGVNVNQLPALEGQGISMALVNLDPCAINLPHVHPRATEMLYVIKG--EQLRVAFVEENGGEGAVMNDLYQGDVAFFPQGLIHYQQNLDCQPATFLAALNSEDAGAVTITTLFFELPT------EAIQASLNFESEKVQELIDSLPDAPALARQQCLQRCGL 573
DF + L G G + ++ QLP+L G+ ++M + L+PC INLPHVHPRATE+LYV+ E + AFVEENGG + N + G+ AFFPQGL H Q N+ C PAT +AAL S+D G TITT + E + A+L +++ LI PD PA+ +C QRCGL
Sbjct: 60 DFKFDLDGSKATTGNGGGSAQTLSAAQLPSLTGEKVAMVKLVLEPCGINLPHVHPRATEILYVVDAAAEGVLTAFVEENGGR-TIENTIVTGEAAFFPQGLTHVQVNMGCTPATMIAALGSDDFGVQTITTTALKGLAGADGLGEGLAAALGISQDQLAVLIGGFPDGPAIGAAECRQRCGL 240
BLAST of mRNA_D-herbacea_F_contig111.955.1 vs. uniprot
Match: A0A0G4FMH1_VITBC (Cupin type-1 domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FMH1_VITBC) HSP 1 Score: 144 bits (363), Expect = 3.080e-35 Identity = 70/194 (36.08%), Postives = 110/194 (56.70%), Query Frame = 1
Query: 4 SPSYKLQQRITMFNPEDFAYSLGGPGPDNLVDGIQFRGVNVNQLPALEGQGISMALVNLDPCAINLPHVHPRATEMLYVIKGEQLRVAFVEENGGEGAVMNDLYQGDVAFFPQGLIHYQQNLDCQPATFLAALNSEDAGAVTITTLFFELPTEAIQASLNFESEKVQELIDSLPDAPALARQQCLQRCGLDKDD 585
SP + + F EDF ++L + G + R V +P+L G G+S AL L PC +N +HPRATE+ YVI +L V FVEENGG + N L G ++F P+GL+H+ N C+ A FL+ N ED G +TI F++ + ++QA+ N +++++ ++ S+P +P +CL +CG + D
Sbjct: 29 SPGQTALKFRSQFKTEDFVFNLAAAKAGDAGKGGELRVAAVAAMPSLAGNGVSQALYRLYPCGMNSVQMHPRATELFYVINATELHVGFVEENGGR-TIENVLKTGQLSFVPKGLLHWHYNAGCEDAIFLSTFNHEDPGVLTIVNALFDINSTSLQAAFNVDADQIADIKSSIPASPVPGIAECLAKCGQEAVD 221 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig111.955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig111.955.1 >prot_D-herbacea_F_contig111.955.1 ID=prot_D-herbacea_F_contig111.955.1|Name=mRNA_D-herbacea_F_contig111.955.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=187bp MFNPEDFAYSLGGPGPDNLVDGIQFRGVNVNQLPALEGQGISMALVNLDPback to top mRNA from alignment at D-herbacea_F_contig111:602767..605825+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig111.955.1 ID=mRNA_D-herbacea_F_contig111.955.1|Name=mRNA_D-herbacea_F_contig111.955.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=3059bp|location=Sequence derived from alignment at D-herbacea_F_contig111:602767..605825+ (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig111:602767..605825+ >mRNA_D-herbacea_F_contig111.955.1 ID=mRNA_D-herbacea_F_contig111.955.1|Name=mRNA_D-herbacea_F_contig111.955.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1122bp|location=Sequence derived from alignment at D-herbacea_F_contig111:602767..605825+ (Desmarestia herbacea DmunF female)back to top |