prot_D-herbacea_F_contig110.912.1 (polypeptide) Desmarestia herbacea DmunF female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-herbacea_F_contig110.912.1
Unique Nameprot_D-herbacea_F_contig110.912.1
Typepolypeptide
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Sequence length509
Homology
BLAST of mRNA_D-herbacea_F_contig110.912.1 vs. uniprot
Match: D8LTY2_ECTSI (Signal recognition particle 54 kDa protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTY2_ECTSI)

HSP 1 Score: 834 bits (2154), Expect = 2.310e-302
Identity = 435/506 (85.97%), Postives = 473/506 (93.48%), Query Frame = 0
Query:   12 MVLQELGNKLTSALRRLHTDTVVDKEIIKAIVGEICRALLESDVNVQMVMKLRKNVEAKAEGLAEE------GASAGAAQ-RRSIQKAVMDELTAMVDPTTAPYKMKKGKSNVVMFVGLQGAGKTTTIAKFAHYWQRKGWKVAMVCADTFRAGAFDQLRQNATKLRCPFYGSYSEADPVRIADEGVQQFRKDKYEVIIVDTSGRHKQEEALFDEMKEIQDTVRPDNTTLIIDATQGQAVLDQAKAFHDAVPVGSVIITKLDGHAKGGGALSAVAATNSPISFLGGGEHFDDLEAFDAQSFVSRLLGFGDMKGLVQQLQESQEGSGDPKEMMERIS-KGKFTLRDLYTRLSATMKMGPVGKMMGMIPGMGEMAQMANNSGTQQMFKKNLYMMDSMTDDELDGKVDLSKSESRVLRIARGSGTHPDEVRALLKLHKHFEKVFGKVGKNMKGDASKVKQLQKNPALAKQHVDRMDPKVVESLGGRQKVLEMMKNGGPGGGAAGASGGDA 509
            MVLQELG+KLTSALRRLHTDTVVD+E +KA+VG+ICRALLESDVNVQMVMKLRKNVEAKAE L  E      G   GAAQ RRSIQKAV+DELT M+DP TAPYKM+KG+SNVVMFVGLQGAGKTTTIAKFAHYWQRKGWKVAMVCADTFRAGAFDQL+QNATKLRCPFYGSYSEADPVRIADEGVQQF+++KYEVIIVDTSGRHKQE+ALFDEMKEIQ+ V+PDNTTLI+DATQGQAV DQAKAFH+AV VGSVIITKLDGHAKGGGALSAVAATNSPI+FLGGGEHFDDLEAFDAQSFVSRLLGFGDMKGL++Q+QESQEGSGDPKEMMERIS KGKFTLRDLY +LS+ MK+GP+ K+MGMIPGMGEMAQMANNS TQ MFKKNLY+MDSMTDDELDGKVDLS+ ESR+LRIARGSGTHPD+VR LLKLHKHFEKVFGKVGKNMKGDASK KQLQ+NPALAKQH+++MDPKVVESLGGR KVLE++KNGG GG   GA+GGDA
Sbjct:    1 MVLQELGSKLTSALRRLHTDTVVDRETVKAVVGDICRALLESDVNVQMVMKLRKNVEAKAESLVAEQQDGGAGGGVGAAQQRRSIQKAVVDELTGMLDPKTAPYKMRKGRSNVVMFVGLQGAGKTTTIAKFAHYWQRKGWKVAMVCADTFRAGAFDQLKQNATKLRCPFYGSYSEADPVRIADEGVQQFKQEKYEVIIVDTSGRHKQEDALFDEMKEIQEAVQPDNTTLIMDATQGQAVFDQAKAFHEAVAVGSVIITKLDGHAKGGGALSAVAATNSPITFLGGGEHFDDLEAFDAQSFVSRLLGFGDMKGLMRQIQESQEGSGDPKEMMERISNKGKFTLRDLYKQLSSAMKLGPMNKVMGMIPGMGEMAQMANNSTTQGMFKKNLYIMDSMTDDELDGKVDLSQCESRLLRIARGSGTHPDQVRGLLKLHKHFEKVFGKVGKNMKGDASKAKQLQRNPALAKQHLNQMDPKVVESLGGRAKVLEIIKNGGAGGPGGGAAGGDA 506          
BLAST of mRNA_D-herbacea_F_contig110.912.1 vs. uniprot
Match: A0A835YYR6_9STRA (Signal recognition particle 54 kDa protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYR6_9STRA)

HSP 1 Score: 583 bits (1503), Expect = 7.080e-203
Identity = 320/512 (62.50%), Postives = 403/512 (78.71%), Query Frame = 0
Query:   12 MVLQELGNKLTSALRRLHTDTVVDKEIIKAIVGEICRALLESDVNVQMVMKLRKNVEAKAEGLAEEGASAGAAQRRSIQKAVMDELTAMVDPTTAPYKMKKGKSNVVMFVGLQGAGKTTTIAKFAHYWQRKGWKVAMVCADTFRAGAFDQLRQNATKLRCPFYGSYSEADPVRIADEGVQQFRKDKYEVIIVDTSGRHKQEEALFDEMKEIQDTVRPDNTTLIIDATQGQAVLDQAKAFHDAVPVGSVIITKLDGHAKGGGALSAVAATNSPISFLGGGEHFDDLEAFDAQSFVSRLLGFGDMKGLVQQLQESQEGSGDPKEMMERISKGKFTLRDLYTRLSATMKMGPVGKMMG-MIPGMGEMAQMANNSGTQQMFKKNLYMMDSMTDDELDGKVDLSKSESRVLRIARGSGTHPDEVRALLKLHKHFEKVFGKVGK----NMKGD---ASKVKQLQKNP-------ALAKQHVDRMDPKVVESLGGRQKVLEMMKNGGPGGGAAGASGGD 508
            MVLQELG KL++ALR+L + TVVD+E++KAI+ EI RALLESDVN+++VM+L+KNVEAK      E AS GA+++R IQ+AVM+EL AM+DP T PY+MKKG SNV+MFVGLQG+GKTTTIAKFAHY+QRKGW+VAMVCADTFRAGAFDQL+QNATKLR PFYGSY+EADPVRIA+EGV+QFRKD++EVIIVDTSGRHKQE+ALF+EM+EIQ  V+PDN   ++DATQGQAV DQA+AFH+AVPVGSV+ITKLDGHAKGGGA+SAVAAT SPI+FLG GEHFDDLE F A SFVS++LGFGD   L+++LQ++ +   DPK+MM+R++KG+FTLRD Y ++   +K+GP+ KMMG M+PG+ + AQ           K+ LYMMDSM DDELDGKVD++ +E RV RIARGSGT  +EV+ LL+ HK  EKV  ++GK    N   D   A+K+ QL +NP       A++K     M P++++ +GGR  V + M+  G   G AG  G D
Sbjct:    1 MVLQELGGKLSAALRKLQSTTVVDEEVVKAIITEITRALLESDVNIKVVMELKKNVEAKINR--SEDAS-GASKKRLIQQAVMEELVAMLDPKTPPYQMKKGASNVIMFVGLQGSGKTTTIAKFAHYYQRKGWRVAMVCADTFRAGAFDQLKQNATKLRVPFYGSYTEADPVRIAEEGVEQFRKDRFEVIIVDTSGRHKQEDALFEEMREIQAAVQPDNCVFVMDATQGQAVADQARAFHEAVPVGSVVITKLDGHAKGGGAMSAVAATKSPITFLGSGEHFDDLEPFVASSFVSKMLGFGDFGSLLRELQDTNDPGMDPKKMMDRMTKGQFTLRDFYQQIQGVLKLGPLNKMMGGMMPGIPDTAQQ----------KRFLYMMDSMRDDELDGKVDIAGNEKRVTRIARGSGTRVEEVQLLLRQHKAREKVVAQMGKSGMMNAATDPAMAAKMAQLMQNPNSRASQAAMSKM----MSPQMLKQMGGRDGVAKRMREMGGMPGMAGGGGMD 495          
BLAST of mRNA_D-herbacea_F_contig110.912.1 vs. uniprot
Match: A0A7S3ZR98_9STRA (Signal recognition particle 54 kDa protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZR98_9STRA)

HSP 1 Score: 553 bits (1426), Expect = 6.100e-192
Identity = 296/488 (60.66%), Postives = 385/488 (78.89%), Query Frame = 0
Query:   12 MVLQELGNKLTSALRRLHTDTVVDKEIIKAIVGEICRALLESDVNVQMVMKLRKNVEAKAEGLAEEGASAGAAQRRSIQKAVMDELTAMVDPTTAPYKMKKGKSNVVMFVGLQGAGKTTTIAKFAHYWQRKGWKVAMVCADTFRAGAFDQLRQNATKLRCPFYGSYSEADPVRIADEGVQQFRKDKYEVIIVDTSGRHKQEEALFDEMKEIQDTVRPDNTTLIIDATQGQAVLDQAKAFHDAVPVGSVIITKLDGHAKGGGALSAVAATNSPISFLGGGEHFDDLEAFDAQSFVSRLLGFGDMKGLVQQLQESQEGSGDPK--EMMERISKGKFTLRDLYTRLSATMKMGPVGKMMGMIPGMGEMAQMANNSGTQQMFKKNLYMMDSMTDDELDGKVDLSKSESRVLRIARGSGTHPDEVRALLKLHKHFEKVFGKVGKN--MKG-DASKVKQLQKNPALAKQHVDR-MDPKVVESLGGRQKVLEMMK 493
            MVLQELG KLT+AL+++ + TV+ +E++  ++ +I  ALLE+DVNV++V +LRK ++ +A  L EE   AGA +R+ IQ+AV+DEL  +VDP   P+++KKGK NV+MFVGLQGAGKTTTIAKFA+Y+QRKG+K  MVCADTFRAGA+DQL+QNATKLRCPFYGSY+EADPV IA EGV QFRK+KYEVIIVDTSGRH+QE ALF+EM+EI+  + PDN   ++DATQGQAV +QA +FH+A+ +GSV++TKLDGHAKGGGALSAVAAT +PI FLG GEHFDD E F A+SFVSRLLG GDM  LV+Q++++    GD K  EMME+ SKG+FTLRD+Y +    MK+GP+ K+M MIPG+ +M    +  G +   K+ +YMMDSMTDDELDG+VDL+++ SRV R+ARGSGTHP EV+ LL+ HK FE V  K+GK+  MKG D   VKQ+Q+NP    Q + + MDP++++ +GG Q ++ MMK
Sbjct:    1 MVLQELGGKLTAALQKMQSVTVISEEVLDKMLKDIAAALLEADVNVRVVGQLRKAIKTRA-ALEEE--VAGANRRKLIQRAVVDELVNIVDPGVTPHEVKKGKPNVIMFVGLQGAGKTTTIAKFANYYQRKGFKCCMVCADTFRAGAYDQLKQNATKLRCPFYGSYTEADPVAIAAEGVAQFRKEKYEVIIVDTSGRHRQEAALFEEMQEIRVAIEPDNVVFVLDATQGQAVHEQATSFHEAIDIGSVVVTKLDGHAKGGGALSAVAATGAPILFLGSGEHFDDFEPFVARSFVSRLLGMGDMSTLVKQIKDT---IGDDKNDEMMEKFSKGEFTLRDMYEQFENVMKLGPLSKVMAMIPGIPQMGGEGDEGGNR--LKRFMYMMDSMTDDELDGRVDLNRAPSRVDRVARGSGTHPMEVQMLLRCHKQFEGVVTKMGKSGLMKGGDEQMVKQMQRNPNQVLQQLHKTMDPRMLQQMGGAQNLMNMMK 480          
BLAST of mRNA_D-herbacea_F_contig110.912.1 vs. uniprot
Match: A0A7S2WJL8_9STRA (Signal recognition particle 54 kDa protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WJL8_9STRA)

HSP 1 Score: 553 bits (1425), Expect = 1.320e-191
Identity = 290/488 (59.43%), Postives = 381/488 (78.07%), Query Frame = 0
Query:   12 MVLQELGNKLTSALRRLHTDTVVDKEIIKAIVGEICRALLESDVNVQMVMKLRKNVEAKAEGLAEEGASAGAAQRRSIQKAVMDELTAMVDPTTAPYKMKKGKSNVVMFVGLQGAGKTTTIAKFAHYWQRKGWKVAMVCADTFRAGAFDQLRQNATKLRCPFYGSYSEADPVRIADEGVQQFRKDKYEVIIVDTSGRHKQEEALFDEMKEIQDTVRPDNTTLIIDATQGQAVLDQAKAFHDAVPVGSVIITKLDGHAKGGGALSAVAATNSPISFLGGGEHFDDLEAFDAQSFVSRLLGFGDMKGLVQQLQESQEGSGDPKEMMERISKGKFTLRDLYTRLSATMKMGPVGKMMGMIPGM--GEMAQMANNSGTQQMFKKNLYMMDSMTDDELDGKVDLSKSESRVLRIARGSGTHPDEVRALLKLHKHFEKVFGKVGKNMK---GDASKVKQLQKNPALAKQHVDR-MDPKVVESLGGRQKVLEMMK 493
            MVLQELG KL  AL++LH  TVVD+E++ A++ +I RALLE+DVNV++V +L+++++ +      E A +G  +RR IQKAVM+EL A++ P   PY+MK+GK NV+MFVGLQG+GKTTTIAK+A+Y+ RKG+K  MVCADTFRAGA+DQL+QNATKLRCPFYGSY+EADPV+IA +GV+QF+ +KYEVIIVDTSGRHKQE  LF+EM+EI+  V PDN   I+DATQGQAV DQA +FH+AV +GS +ITKLDGHAKGGGALSAVAAT +PI+FLG GEHFDDLE F A+SFVSRLLG GDM+GLV+ ++E+     +P E+M++ +KG FTLRD+Y +    MK+GP+ K+M MIPG+  G M Q  +   + ++ K+ +YMMDSMTD ELDG+VDL KS  R+ RI+RGSGTHP EV+ LL+ HK FE V  K+GK+     GDA+  KQ+ +NP    Q + + MDP++++ +GG Q V++MMK
Sbjct:    1 MVLQELGRKLEGALKKLHATTVVDEEVVTAMLNDIARALLEADVNVRVVGQLKQSIKMRVNL---EEAPSGNNRRRMIQKAVMEELVAILQPDGEPYQMKRGKPNVIMFVGLQGSGKTTTIAKYANYYLRKGFKCCMVCADTFRAGAYDQLKQNATKLRCPFYGSYTEADPVQIAQDGVEQFKSEKYEVIIVDTSGRHKQESVLFEEMQEIRAAVEPDNIVFILDATQGQAVHDQASSFHEAVDIGSCVITKLDGHAKGGGALSAVAATGAPITFLGSGEHFDDLEPFRAESFVSRLLGMGDMRGLVETIKETVGDDKNP-ELMDKFAKGVFTLRDMYEQFQNVMKLGPLSKVMSMIPGIPQGLMGQAGDQESSNRL-KRFMYMMDSMTDAELDGQVDLEKSPGRIERISRGSGTHPMEVQQLLRTHKQFEGVVKKMGKSSMLRGGDANMAKQISRNPNQCLQQIHKVMDPRMLQQMGGAQNVMKMMK 483          
BLAST of mRNA_D-herbacea_F_contig110.912.1 vs. uniprot
Match: F0Y473_AURAN (Signal recognition particle 54 kDa protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y473_AURAN)

HSP 1 Score: 553 bits (1424), Expect = 1.510e-191
Identity = 292/486 (60.08%), Postives = 380/486 (78.19%), Query Frame = 0
Query:   12 MVLQELGNKLTSALRRLHTDTVVDKEIIKAIVGEICRALLESDVNVQMVMKLRKNVEAKAEGLAEEGASAGAAQRRSIQKAVMDELTAMVDPTTAPYKMKKGKSNVVMFVGLQGAGKTTTIAKFAHYWQRKGWKVAMVCADTFRAGAFDQLRQNATKLRCPFYGSYSEADPVRIADEGVQQFRKDKYEVIIVDTSGRHKQEEALFDEMKEIQDTVRPDNTTLIIDATQGQAVLDQAKAFHDAVPVGSVIITKLDGHAKGGGALSAVAATNSPISFLGGGEHFDDLEAFDAQSFVSRLLGFGDMKGLVQQLQESQEGSGDPKEMMERISKGKFTLRDLYTRLSATMKMGPVGKMMGMIPGMGEMAQMANNSGTQQMFKKNLYMMDSMTDDELDGKVDLSKSESRVLRIARGSGTHPDEVRALLKLHKHFEKVFGKVGKN--MKG-DASKVKQLQKNPALAKQHVDR-MDPKVVESLGGRQKVLEMMK 493
            MVLQELG+KLT+AL ++ + TV+ +E++  ++ +I  ALLE+DVNV++VM+LRK ++ +A  L EE  SAG  +R+ IQKAV++EL  M+DP    ++MKKG  NV+MFVGLQGAGKTTTIAKFA+++ RKG+K  MVCADTFRAGA+DQLRQNATKLRCPFYGSY+EADPVRIA EGV QF+ +KYEVIIVDTSGRHKQE ALF+EM+EI+  + P N   ++DATQGQAV +QA +FH+A+ +GSV+ITKLDGHAKGGGALSAVAAT +PI FLG GEHFDD E F+A SFVSRLLG GDM+GLV+Q++++      P E+ME+ SKG+FTLRD+Y +    MK+GP+ K+M MIPG+  M     +    ++ K+ +YMMDSMTDDELD KVDL+KS SR+ R+ARGSG HP EV+ LLK HK FE V  K+GK+  MKG DA+  KQ+Q+NP    Q + + MDP++++ +GG Q ++ MM+
Sbjct:    1 MVLQELGSKLTAALHKMQSVTVISEEVLDKMLKDIAAALLEADVNVRVVMELRKAIKTRA-NLEEE--SAGTNRRKMIQKAVVEELAGMLDPGVKAHEMKKGSPNVIMFVGLQGAGKTTTIAKFANHYLRKGFKCCMVCADTFRAGAYDQLRQNATKLRCPFYGSYTEADPVRIAQEGVDQFKAEKYEVIIVDTSGRHKQETALFEEMQEIRAAIEPQNVIFVLDATQGQAVHEQASSFHEAIDIGSVVITKLDGHAKGGGALSAVAATGAPILFLGSGEHFDDFEPFNAHSFVSRLLGMGDMRGLVEQIKDTIGDDKQP-ELMEKFSKGQFTLRDMYEQFENVMKLGPLSKVMAMIPGIPSMMGGEGDESNNRL-KRFMYMMDSMTDDELDAKVDLNKSASRIERVARGSGCHPMEVQMLLKCHKQFESVVSKMGKSGLMKGGDAAMAKQMQRNPNQVMQQLHKAMDPRMLQQMGGAQNLMSMMQ 481          
BLAST of mRNA_D-herbacea_F_contig110.912.1 vs. uniprot
Match: A0A4D9CXS1_9STRA (Signal recognition particle 54 kDa protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CXS1_9STRA)

HSP 1 Score: 553 bits (1424), Expect = 4.370e-190
Identity = 300/507 (59.17%), Postives = 384/507 (75.74%), Query Frame = 0
Query:   12 MVLQELGNKLTSALRRLHTDTVVDKEIIKAIVGEICRALLESDVNVQMVMKLRKNVEAKAEGLAEEGASAGAAQRRSIQKAVMDELTAMVDPTTAPYKMKKGKSNVVMFVGLQGAGKTTTIAKFAHYWQRKGWKVAMVCADTFRAGAFDQLRQNATKLRCPFYGSYSEADPVRIADEGVQQFRKDKYEVIIVDTSGRHKQEEALFDEMKEIQDTVRPDNTTLIIDATQGQAVLDQAKAFHDAVPVGSVIITKLDGHAKGGGALSAVAATNSPISFLGGGEHFDDLEAFDAQSFVSRLLGFGDMKGLVQQLQE--SQEGSGDPKEMM-ERISKGKFTLRDLYTRLSATMKMGPVGKMMGMIPGM-------GEMAQMANNSGTQQMFKKNLYMMDSMTDDELDGKVDLSKSESRVLRIARGSGTHPDEVRALLKLHKHFEKVFGKVGKNMK--GDASKVKQLQKNPALAKQHVDR-MDPKVVESLGGRQKVLEMMK--NGGPGGGAAG 503
            MVLQELG+KLT ALRRL T TVV+ +++  ++ ++CRAL+ESDVN+++V  LRK ++ K   LA+  A AG  +R+ +Q+AVM+EL  +VD  T PY+MKKGKSNV+MFVGLQG+GKTTTIAK+A+Y+QRKGWK  MVCADTFRAGAFDQL+QNATKLR PFYGSY+EADPVRIA+EGVQQFR + YEVIIVDTSGRHKQEEALF+EMKEIQ  VRPDN   ++DATQGQAV DQA+ FH A  VGSVI+TKLDGHAKGGGALSAVAAT +PI FLG GEHFDDL+ F+  SF+SRLLG GDM+G ++++    ++EG  + +E M +R+ KG+FTLRD+Y +    MK+GP+ K+MGM+PG        GE  +   +       K+ L MMDSMTD ELDGKVDL+KSESRV RIARGSG HP EV+ LLK +  F ++F K+G  M   G+    +Q+ +NP      + + +DP++++ +GG + +++MMK   GG GGG  G
Sbjct:    1 MVLQELGDKLTGALRRLQTTTVVNDDVLNDLLQDVCRALVESDVNIKVVATLRKGIKEKV-NLAD--APAGLNRRKMVQRAVMEELVRLVDSGTKPYQMKKGKSNVIMFVGLQGSGKTTTIAKYANYYQRKGWKTCMVCADTFRAGAFDQLKQNATKLRVPFYGSYTEADPVRIAEEGVQQFRSEGYEVIIVDTSGRHKQEEALFEEMKEIQAAVRPDNVVYVMDATQGQAVFDQAQGFHQAATVGSVIVTKLDGHAKGGGALSAVAATGAPIIFLGSGEHFDDLDVFNPGSFISRLLGLGDMRGFLEEVSSLGAREGGKERQEAMAQRLVKGQFTLRDMYEQFENVMKLGPLSKVMGMLPGFPSFLMGGGEGGRGGQDEAATGRLKRFLTMMDSMTDAELDGKVDLNKSESRVNRIARGSGAHPMEVQFLLKTYAQFSQMFKKMGPMMLKGGEGGIQRQMARNPGGVMNQLSKAVDPRMLQQMGGAKGMMDMMKAMGGGSGGGLGG 504          
BLAST of mRNA_D-herbacea_F_contig110.912.1 vs. uniprot
Match: A0A7S4VL55_9STRA (Signal recognition particle 54 kDa protein (Fragment) n=6 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VL55_9STRA)

HSP 1 Score: 546 bits (1406), Expect = 3.710e-188
Identity = 295/510 (57.84%), Postives = 385/510 (75.49%), Query Frame = 0
Query:   12 MVLQELGNKLTSALRRLHTDT-VVDKEIIKAIVGEICRALLESDVNVQMVMKLRKNVEAKAEGLAEEGASAGAAQR---RSIQKAVMDELTAMVDPT-TAPYKMKKGKSNVVMFVGLQGAGKTTTIAKFAHYWQRKGWKVAMVCADTFRAGAFDQLRQNATKLRCPFYGSYSEADPVRIADEGVQQFRKDKYEVIIVDTSGRHKQEEALFDEMKEIQDTVRPDNTTLIIDATQGQAVLDQAKAFHDAVPVGSVIITKLDGHAKGGGALSAVAATNSPISFLGGGEHFDDLEAFDAQSFVSRLLGFGDMKGLVQQLQESQEGSGDPKEMMERISKGKFTLRDLYTRLSATMKMGPVGKMMGMIPGMGE--MAQMANNSGTQQMFKKNLYMMDSMTDDELDGKVDLSKS-----ESRVLRIARGSGTHPDEVRALLKLHKHFEKVFGKVGKN-MKGDASK------VKQLQKNPALAKQHVDRMDPKVVESLGGRQKVLEMMK---NGGPGG 499
            MVL ELG KL  +LR++H+ +  +D E +  I+ EI RAL+ESDVNV++VM +R+N++ +   L E+    GA      R +QK+VM+ELT+M+ P    PY M++GK NV++FVGLQGAGKTT+I K+A+Y+QR+GWK  MVCADTFRAGAFDQL+QNATKLR PFYGSY+EADPV IA+EGV QF +D YEVIIVDTSGRH+QE ALF+EM+EI   V PDNT  ++DATQGQAV DQA+AFHD+VPVGSVI+TKLDGHAKGGGALSAVAATNSPI FLG GEHFDD + F+AQSFVS+LLGFGD++G ++++ +S   S   +E+ME++SKG+FTLRD+Y +  + MKMGP+ K+MGM+PG+ E  + + A++ GT ++ KK +YMMDSMTD ELDGKVD+ K      ESR+ RIARGSGTHP EV+ +L+ HK FE V  ++GK+ M G A          Q+++NP      +  MDPK+++ +GG + V  MMK   +GG GG
Sbjct:    1 MVLAELGGKLRESLRKIHSSSGAIDSEQLNVILSEITRALIESDVNVKLVMTMRENIKNRVGELVEKAEEGGAGSHNVNRLVQKSVMEELTSMLTPKENKPYVMRRGKPNVILFVGLQGAGKTTSIGKYANYYQRRGWKTCMVCADTFRAGAFDQLKQNATKLRVPFYGSYTEADPVAIAEEGVAQFAEDGYEVIIVDTSGRHRQESALFEEMQEISAAVSPDNTVFVMDATQGQAVYDQAQAFHDSVPVGSVIVTKLDGHAKGGGALSAVAATNSPIIFLGSGEHFDDFDPFNAQSFVSKLLGFGDVRGFMEEM-KSVHDSKTQEELMEKMSKGEFTLRDMYKQFQSIMKMGPLNKVMGMMPGVPEYLIPKSADDEGTLRL-KKFMYMMDSMTDAELDGKVDMHKKYDPAVESRIKRIARGSGTHPKEVQMMLQAHKQFESVISRMGKSGMMGKAGAENQRKLAAQMKRNPNQVMSQLKNMDPKILKQMGGEENVRNMMKQYQSGGMGG 508          
BLAST of mRNA_D-herbacea_F_contig110.912.1 vs. uniprot
Match: A0A448YZ54_9STRA (SRP54 domain-containing protein n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448YZ54_9STRA)

HSP 1 Score: 539 bits (1388), Expect = 2.470e-184
Identity = 301/517 (58.22%), Postives = 377/517 (72.92%), Query Frame = 0
Query:   12 MVLQELGNKLTSALRRLHTDTV-VDKEIIKAIVGEICRALLESDVNVQMVMKLRKNVEAKAEGL--------AEEGASAGAAQRRS-----IQKAVMDELTAMVDPTTAPYKMKKGKSNVVMFVGLQGAGKTTTIAKFAHYWQRKGWKVAMVCADTFRAGAFDQLRQNATKLRCPFYGSYSEADPVRIADEGVQQFRKDKYEVIIVDTSGRHKQEEALFDEMKEIQDTVRPDNTTLIIDATQGQAVLDQAKAFHDAVPVGSVIITKLDGHAKGGGALSAVAATNSPISFLGGGEHFDDLEAFDAQSFVSRLLGFGDMKGLVQQLQESQEGSGDPKE-MMERISKGKFTLRDLYTRLSATMKMGPVGKMMGMIPGMGE-MAQMANNSGTQQMFKKNLYMMDSMTDDELDGKVDLSKSE-----SRVLRIARGSGTHPDEVRALLKLHKHFEKVFGKVGKN-MKGDASKVKQ------LQKNPALAKQHVDRMDPKVVESLGGRQKVLEMMKNGGPGGG 500
            MVL ELG KL  +LR+LHT +  V    +  ++ E+ RAL+ESDVNV++VM LR NV+ K E L         EE +     QR S     +QKAV+DEL  +++P+  PY MK+GK NV++FVGLQGAGKTTTIAKFA+Y+QR+GWK AMVCADTFRAGAFDQL+QNATKLR PFYGSY++ADPV IA+EGV QF K+ YEVIIVDTSGRH+QE  L +EM+EI   V PDN  L++DATQGQAV DQA+AF +AV VGSV+ITKLDGHAKGGGALSAVAAT SPI FLG GEHFDDLE F+AQSF+S+LLGFGD++GL+    E+  GS D KE +ME++SKG+FTLRD+Y +    M MGP+ KMMGM+PGM E +     +S +    KK LYMMDSMTD ELDGKVD S  E     SR+ RIA GSG HP EV+ LL++HK FE +  K+GK+ M G  +  +Q      +++NP    Q +++MDPK++E +GGR++V   M+N   GGG
Sbjct:    1 MVLAELGGKLRESLRKLHTSSGHVTATKLNQVLTEVTRALIESDVNVRLVMTLRNNVKKKVERLIEDDEDSETEEDSDXKKEQRASNVSKMVQKAVVDELVGLLEPSRKPYGMKRGKPNVILFVGLQGAGKTTTIAKFANYYQRRGWKTAMVCADTFRAGAFDQLKQNATKLRVPFYGSYTQADPVAIAEEGVDQFVKEHYEVIIVDTSGRHRQEAGLLEEMQEISAAVAPDNVVLVMDATQGQAVFDQAQAFSNAVDVGSVVITKLDGHAKGGGALSAVAATESPIIFLGSGEHFDDLEPFNAQSFISKLLGFGDVRGLM----EAMNGSPDDKEELMEKMSKGEFTLRDMYKQFQRVMNMGPLNKMMGMVPGMPEYLVPKGGDSDSNNRLKKFLYMMDSMTDKELDGKVDFSDHEEPQTMSRIRRIAAGSGNHPKEVQMLLQVHKQFEGMVSKMGKSGMVGKQAXAQQQALAAQMRRNPNFINQRLNQMDPKLLEQMGGREQVKSHMENMARGGG 513          
BLAST of mRNA_D-herbacea_F_contig110.912.1 vs. uniprot
Match: A0A7S1TR72_9STRA (Signal recognition particle 54 kDa protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TR72_9STRA)

HSP 1 Score: 528 bits (1360), Expect = 1.190e-181
Identity = 287/504 (56.94%), Postives = 378/504 (75.00%), Query Frame = 0
Query:   12 MVLQELGNKLTSALRRLHTDTVVDKEIIKAIVGEICRALLESDVNVQMVMKLRKNVEAKAEGLAEEGASAGAAQRRSIQKAVMDELTAMVDPTTAPYKMKKGKSNVVMFVGLQGAGKTTTIAKFAHYWQRKGWKVAMVCADTFRAGAFDQLRQNATKLRCPFYGSYSEADPVRIADEGVQQFRKDKYEVIIVDTSGRHKQEEALFDEMKEIQDTVRPDNTTLIIDATQGQAVLDQAKAFHDAVPVGSVIITKLDGHAKGGGALSAVAATNSPISFLGGGEHFDDLEAFDAQSFVSRLLGFGDMKGLVQQLQESQEGSGDPKEMMERISKGKFTLRDLYTRLSATMKMGPVGKMMGMIPGMGEMAQMANNSGTQQM---FKKNLYMMDSMTDDELDGKVD--LSKSESRVLRIARGSGTHPDEVRALLKLHKHFEKVFGKVGKN--MKG-DASKVKQLQKNPALAKQHVDR-MDPKVVESLGGRQKVLEMMKN-------GGPGG 499
            MVL ELG+K+T+AL RL   T+VD+E++  ++ +I RALLE+DVNV++V + R+ V+ K   LA+  ++AG  +R+ IQ+AV +ELT+M+D    PYK +KG+ NV+MFVGLQG+GKTTT+AK AH++QRKGW+ AMVCADTFRAGAFDQL+QNATKLRCPFYGSY+EADPVRIA+EGV QFR D YE+IIVDTSGRH+QE+ALF+EM+EI+  V PD+  L++D TQGQAV  QA AF+D+V VG+V++TKLDGHAKGGGAL AVAAT+SPI FLG GEHFDDL+ F   SFVSRLLG GD++GL+++L+E  +     +E+ ER SKG+FTLRD+Y +  + MK+GP+GK+MGM+PGM          G  Q     K+ + MMDSMTD ELDG++D  L  S SR+ RIA GSG+HP EV+ LL+ HK FE V  K+GK+  M+G D    KQ+ +NP      + + M+P+++  +GG Q V++MMK        GGPGG
Sbjct:    1 MVLGELGSKITNALHRLQASTIVDEEVLTTMLADISRALLEADVNVRLVGEFREKVKIKV-NLAD--SAAGMNRRKVIQRAVFEELTSMLDAGVVPYKPRKGRPNVIMFVGLQGSGKTTTVAKVAHFYQRKGWRTAMVCADTFRAGAFDQLKQNATKLRCPFYGSYTEADPVRIAEEGVAQFRADNYEIIIVDTSGRHRQEDALFEEMQEIRAAVEPDHIILVVDGTQGQAVFAQASAFNDSVDVGAVVLTKLDGHAKGGGALGAVAATSSPIQFLGTGEHFDDLDIFVPSSFVSRLLGMGDVRGLMEELKEVVDEEKQ-EELAERFSKGQFTLRDMYEQFQSVMKLGPIGKVMGMLPGMPSHLLGGGGPGGDQSTERVKRFMTMMDSMTDAELDGQMDKDLENSPSRIERIAYGSGSHPLEVQMLLRTHKQFEGVVKKMGKSSLMRGNDEQLAKQMARNPKQVLGQISKAMNPRMLAQMGGAQNVMQMMKEMSKMDGGGGPGG 500          
BLAST of mRNA_D-herbacea_F_contig110.912.1 vs. uniprot
Match: A0A7R9W6K7_9STRA (Signal recognition particle 54 kDa protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W6K7_9STRA)

HSP 1 Score: 525 bits (1351), Expect = 2.180e-179
Identity = 289/502 (57.57%), Postives = 380/502 (75.70%), Query Frame = 0
Query:   12 MVLQELGNKLTSALRRLHTDT-VVDKEIIKAIVGEICRALLESDVNVQMVMKLRKNVEAKAEGLAEEGA---SAGAAQ-RRSIQKAVMDELTAMVDPTT--APYKMKKGKSNVVMFVGLQGAGKTTTIAKFAHYWQRKGWKVAMVCADTFRAGAFDQLRQNATKLRCPFYGSYSEADPVRIADEGVQQFRKDKYEVIIVDTSGRHKQEEALFDEMKEIQDTVRPDNTTLIIDATQGQAVLDQAKAFHDAVPVGSVIITKLDGHAKGGGALSAVAATNSPISFLGGGEHFDDLEAFDAQSFVSRLLGFGDMKGLVQQLQESQEGSGDPK---EMMERISKGKFTLRDLYTRLSATMKMGPVGKMMGMIPGMGE-MAQMANNSGTQQMFKKNLYMMDSMTDDELDGKVDLSKS-----ESRVLRIARGSGTHPDEVRALLKLHKHFEKVFGKVGKN-MKGDASKVKQLQ------KNPALAKQHVDRMDPKVVESLGGRQKVLE 490
            MVL ELG KL ++LR+L +    VD  ++  I+ +I RAL+E+DVNV++VM LR NV+ +   + E+ A   S+G+A   R +Q+AV+DELT+M+ P     P+ M++GK NV++FVGLQGAGKTT+IAK+A+Y+QR+GWK AMVCADTFRAGAFDQL+QNATKLR PFYGSY+EADPV IA++GV QF  + YEVIIVDTSGRH+QE ALF+EM+EI   VRPDNT  ++DATQGQAV DQA AF +AV VGSVI+TKLDGHAKGGGALSAVAAT+SPI FLG GEHFDD + F+A+SFVS+LLG+GD++GL+++++  Q    DPK   E+ME+++KG+FTLRD+Y +    MKMG +GK+MGM+PG+ E +   + +  + +  KK +YMMDSMTD ELDGKVD+ K      ESR+ RIA+GSGTHP EV+ LL+ HK FE V  K+GK+ M G A   +Q Q      KNPAL +Q +  MDP V++S+GG   +++
Sbjct:    1 MVLAELGGKLRNSLRKLSSGGGSVDTALLNEILSDIGRALIEADVNVKLVMSLRTNVKNRVGKIVEDSAGAESSGSANVSRLVQRAVVDELTSMLTPNADVKPHTMRRGKPNVILFVGLQGAGKTTSIAKYANYYQRRGWKTAMVCADTFRAGAFDQLKQNATKLRVPFYGSYTEADPVAIAEDGVAQFADEGYEVIIVDTSGRHRQESALFEEMQEISSAVRPDNTVFVMDATQGQAVYDQALAFQEAVDVGSVIVTKLDGHAKGGGALSAVAATDSPIIFLGSGEHFDDFDPFNAKSFVSKLLGYGDVRGLMEEMKSVQ----DPKTQEELMEKMAKGQFTLRDMYNQFQNMMKMGGMGKVMGMMPGIPEYLIPKSGDDESTRRLKKFMYMMDSMTDKELDGKVDMHKKGDPTVESRIRRIAKGSGTHPKEVQMLLQCHKQFEGVVSKMGKSGMMGKAGSARQKQVMEQMRKNPALMQQQLKNMDPNVLKSMGGSGNMMQ 498          
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig110.912.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTY2_ECTSI2.310e-30285.97Signal recognition particle 54 kDa protein (Fragme... [more]
A0A835YYR6_9STRA7.080e-20362.50Signal recognition particle 54 kDa protein n=1 Tax... [more]
A0A7S3ZR98_9STRA6.100e-19260.66Signal recognition particle 54 kDa protein n=2 Tax... [more]
A0A7S2WJL8_9STRA1.320e-19159.43Signal recognition particle 54 kDa protein n=1 Tax... [more]
F0Y473_AURAN1.510e-19160.08Signal recognition particle 54 kDa protein n=1 Tax... [more]
A0A4D9CXS1_9STRA4.370e-19059.17Signal recognition particle 54 kDa protein n=2 Tax... [more]
A0A7S4VL55_9STRA3.710e-18857.84Signal recognition particle 54 kDa protein (Fragme... [more]
A0A448YZ54_9STRA2.470e-18458.22SRP54 domain-containing protein n=2 Tax=Pseudo-nit... [more]
A0A7S1TR72_9STRA1.190e-18156.94Signal recognition particle 54 kDa protein n=1 Tax... [more]
A0A7R9W6K7_9STRA2.180e-17957.57Signal recognition particle 54 kDa protein n=1 Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Desmarestia herbacea DmunF female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000897Signal recognition particle, SRP54 subunit, GTPase domainSMARTSM00962SRP54_3coord: 115..310
e-value: 8.9E-97
score: 337.5
IPR000897Signal recognition particle, SRP54 subunit, GTPase domainPFAMPF00448SRP54coord: 116..310
e-value: 6.8E-77
score: 257.5
IPR000897Signal recognition particle, SRP54 subunit, GTPase domainPROSITEPS00300SRP54coord: 283..296
IPR013822Signal recognition particle SRP54, helical bundleSMARTSM00963SRP54_N_2coord: 13..101
e-value: 8.2E-13
score: 58.6
IPR013822Signal recognition particle SRP54, helical bundlePFAMPF02881SRP54_Ncoord: 17..97
e-value: 1.7E-17
score: 63.4
IPR003593AAA+ ATPase domainSMARTSM00382AAA_5coord: 114..309
e-value: 7.5E-8
score: 42.1
IPR036891Signal recognition particle, SRP54 subunit, M-domain superfamilyGENE3D1.10.260.30coord: 328..460
e-value: 3.7E-32
score: 113.1
IPR036891Signal recognition particle, SRP54 subunit, M-domain superfamilySUPERFAMILY47446Signal peptide-binding domaincoord: 312..446
IPR042101Signal recognition particle SRP54, N-terminal domain superfamilyGENE3D1.20.120.140coord: 17..319
e-value: 8.2E-112
score: 375.0
NoneNo IPR availableGENE3D3.40.50.300coord: 105..299
e-value: 8.2E-112
score: 375.0
NoneNo IPR availablePANTHERPTHR11564:SF5SIGNAL RECOGNITION PARTICLE 54 KDA PROTEINcoord: 12..494
IPR006325Signal recognition particle, SRP54 subunit, eukaryoticTIGRFAMTIGR01425TIGR01425coord: 13..441
e-value: 7.4E-176
score: 583.1
IPR004125Signal recognition particle, SRP54 subunit, M-domainPFAMPF02978SRP_SPBcoord: 342..442
e-value: 2.7E-27
score: 95.3
IPR022941Signal recognition particle, SRP54 subunitPANTHERPTHR11564GTPASE CONTAINING FAMILY OF SIGNAL RECOGNITION PARTICLE PROTEINScoord: 12..494
IPR022941Signal recognition particle, SRP54 subunitHAMAPMF_00306SRP54coord: 17..492
score: 33.454
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 111..312
IPR036225SRP/SRP receptor, N-terminalSUPERFAMILY47364Domain of the SRP/SRP receptor G-proteinscoord: 12..107

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig110contigD-herbacea_F_contig110:606812..615926 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Desmarestia herbacea DmunF female2022-09-29
Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-16
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig110.912.1mRNA_D-herbacea_F_contig110.912.1Desmarestia herbacea DmunF femalemRNAD-herbacea_F_contig110 606812..615926 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-herbacea_F_contig110.912.1 ID=prot_D-herbacea_F_contig110.912.1|Name=mRNA_D-herbacea_F_contig110.912.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=509bp
LVPLVHADLADMVLQELGNKLTSALRRLHTDTVVDKEIIKAIVGEICRAL
LESDVNVQMVMKLRKNVEAKAEGLAEEGASAGAAQRRSIQKAVMDELTAM
VDPTTAPYKMKKGKSNVVMFVGLQGAGKTTTIAKFAHYWQRKGWKVAMVC
ADTFRAGAFDQLRQNATKLRCPFYGSYSEADPVRIADEGVQQFRKDKYEV
IIVDTSGRHKQEEALFDEMKEIQDTVRPDNTTLIIDATQGQAVLDQAKAF
HDAVPVGSVIITKLDGHAKGGGALSAVAATNSPISFLGGGEHFDDLEAFD
AQSFVSRLLGFGDMKGLVQQLQESQEGSGDPKEMMERISKGKFTLRDLYT
RLSATMKMGPVGKMMGMIPGMGEMAQMANNSGTQQMFKKNLYMMDSMTDD
ELDGKVDLSKSESRVLRIARGSGTHPDEVRALLKLHKHFEKVFGKVGKNM
KGDASKVKQLQKNPALAKQHVDRMDPKVVESLGGRQKVLEMMKNGGPGGG
AAGASGGDA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036225SRP/SRP_N
IPR027417P-loop_NTPase
IPR022941SRP54
IPR004125Signal_recog_particle_SRP54_M
IPR006325SRP54_euk
IPR042101SRP54_N_sf
IPR036891Signal_recog_part_SRP54_M_sf
IPR003593AAA+_ATPase
IPR013822Signal_recog_particl_SRP54_hlx
IPR000897SRP54_GTPase_dom