mRNA_D-herbacea_F_contig110.912.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig110.912.1 vs. uniprot
Match: D8LTY2_ECTSI (Signal recognition particle 54 kDa protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTY2_ECTSI) HSP 1 Score: 834 bits (2154), Expect = 2.310e-302 Identity = 435/506 (85.97%), Postives = 473/506 (93.48%), Query Frame = 1
Query: 34 MVLQELGNKLTSALRRLHTDTVVDKEIIKAIVGEICRALLESDVNVQMVMKLRKNVEAKAEGLAEE------GASAGAAQ-RRSIQKAVMDELTAMVDPTTAPYKMKKGKSNVVMFVGLQGAGKTTTIAKFAHYWQRKGWKVAMVCADTFRAGAFDQLRQNATKLRCPFYGSYSEADPVRIADEGVQQFRKDKYEVIIVDTSGRHKQEEALFDEMKEIQDTVRPDNTTLIIDATQGQAVLDQAKAFHDAVPVGSVIITKLDGHAKGGGALSAVAATNSPISFLGGGEHFDDLEAFDAQSFVSRLLGFGDMKGLVQQLQESQEGSGDPKEMMERIS-KGKFTLRDLYTRLSATMKMGPVGKMMGMIPGMGEMAQMANNSGTQQMFKKNLYMMDSMTDDELDGKVDLSKSESRVLRIARGSGTHPDEVRALLKLHKHFEKVFGKVGKNMKGDASKVKQLQKNPALAKQHVDRMDPKVVESLGGRQKVLEMMKNGGPGGGAAGASGGDA 1527
MVLQELG+KLTSALRRLHTDTVVD+E +KA+VG+ICRALLESDVNVQMVMKLRKNVEAKAE L E G GAAQ RRSIQKAV+DELT M+DP TAPYKM+KG+SNVVMFVGLQGAGKTTTIAKFAHYWQRKGWKVAMVCADTFRAGAFDQL+QNATKLRCPFYGSYSEADPVRIADEGVQQF+++KYEVIIVDTSGRHKQE+ALFDEMKEIQ+ V+PDNTTLI+DATQGQAV DQAKAFH+AV VGSVIITKLDGHAKGGGALSAVAATNSPI+FLGGGEHFDDLEAFDAQSFVSRLLGFGDMKGL++Q+QESQEGSGDPKEMMERIS KGKFTLRDLY +LS+ MK+GP+ K+MGMIPGMGEMAQMANNS TQ MFKKNLY+MDSMTDDELDGKVDLS+ ESR+LRIARGSGTHPD+VR LLKLHKHFEKVFGKVGKNMKGDASK KQLQ+NPALAKQH+++MDPKVVESLGGR KVLE++KNGG GG GA+GGDA
Sbjct: 1 MVLQELGSKLTSALRRLHTDTVVDRETVKAVVGDICRALLESDVNVQMVMKLRKNVEAKAESLVAEQQDGGAGGGVGAAQQRRSIQKAVVDELTGMLDPKTAPYKMRKGRSNVVMFVGLQGAGKTTTIAKFAHYWQRKGWKVAMVCADTFRAGAFDQLKQNATKLRCPFYGSYSEADPVRIADEGVQQFKQEKYEVIIVDTSGRHKQEDALFDEMKEIQEAVQPDNTTLIMDATQGQAVFDQAKAFHEAVAVGSVIITKLDGHAKGGGALSAVAATNSPITFLGGGEHFDDLEAFDAQSFVSRLLGFGDMKGLMRQIQESQEGSGDPKEMMERISNKGKFTLRDLYKQLSSAMKLGPMNKVMGMIPGMGEMAQMANNSTTQGMFKKNLYIMDSMTDDELDGKVDLSQCESRLLRIARGSGTHPDQVRGLLKLHKHFEKVFGKVGKNMKGDASKAKQLQRNPALAKQHLNQMDPKVVESLGGRAKVLEIIKNGGAGGPGGGAAGGDA 506
BLAST of mRNA_D-herbacea_F_contig110.912.1 vs. uniprot
Match: A0A835YYR6_9STRA (Signal recognition particle 54 kDa protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYR6_9STRA) HSP 1 Score: 583 bits (1503), Expect = 7.080e-203 Identity = 320/512 (62.50%), Postives = 403/512 (78.71%), Query Frame = 1
Query: 34 MVLQELGNKLTSALRRLHTDTVVDKEIIKAIVGEICRALLESDVNVQMVMKLRKNVEAKAEGLAEEGASAGAAQRRSIQKAVMDELTAMVDPTTAPYKMKKGKSNVVMFVGLQGAGKTTTIAKFAHYWQRKGWKVAMVCADTFRAGAFDQLRQNATKLRCPFYGSYSEADPVRIADEGVQQFRKDKYEVIIVDTSGRHKQEEALFDEMKEIQDTVRPDNTTLIIDATQGQAVLDQAKAFHDAVPVGSVIITKLDGHAKGGGALSAVAATNSPISFLGGGEHFDDLEAFDAQSFVSRLLGFGDMKGLVQQLQESQEGSGDPKEMMERISKGKFTLRDLYTRLSATMKMGPVGKMMG-MIPGMGEMAQMANNSGTQQMFKKNLYMMDSMTDDELDGKVDLSKSESRVLRIARGSGTHPDEVRALLKLHKHFEKVFGKVGK----NMKGD---ASKVKQLQKNP-------ALAKQHVDRMDPKVVESLGGRQKVLEMMKNGGPGGGAAGASGGD 1524
MVLQELG KL++ALR+L + TVVD+E++KAI+ EI RALLESDVN+++VM+L+KNVEAK E AS GA+++R IQ+AVM+EL AM+DP T PY+MKKG SNV+MFVGLQG+GKTTTIAKFAHY+QRKGW+VAMVCADTFRAGAFDQL+QNATKLR PFYGSY+EADPVRIA+EGV+QFRKD++EVIIVDTSGRHKQE+ALF+EM+EIQ V+PDN ++DATQGQAV DQA+AFH+AVPVGSV+ITKLDGHAKGGGA+SAVAAT SPI+FLG GEHFDDLE F A SFVS++LGFGD L+++LQ++ + DPK+MM+R++KG+FTLRD Y ++ +K+GP+ KMMG M+PG+ + AQ K+ LYMMDSM DDELDGKVD++ +E RV RIARGSGT +EV+ LL+ HK EKV ++GK N D A+K+ QL +NP A++K M P++++ +GGR V + M+ G G AG G D
Sbjct: 1 MVLQELGGKLSAALRKLQSTTVVDEEVVKAIITEITRALLESDVNIKVVMELKKNVEAKINR--SEDAS-GASKKRLIQQAVMEELVAMLDPKTPPYQMKKGASNVIMFVGLQGSGKTTTIAKFAHYYQRKGWRVAMVCADTFRAGAFDQLKQNATKLRVPFYGSYTEADPVRIAEEGVEQFRKDRFEVIIVDTSGRHKQEDALFEEMREIQAAVQPDNCVFVMDATQGQAVADQARAFHEAVPVGSVVITKLDGHAKGGGAMSAVAATKSPITFLGSGEHFDDLEPFVASSFVSKMLGFGDFGSLLRELQDTNDPGMDPKKMMDRMTKGQFTLRDFYQQIQGVLKLGPLNKMMGGMMPGIPDTAQQ----------KRFLYMMDSMRDDELDGKVDIAGNEKRVTRIARGSGTRVEEVQLLLRQHKAREKVVAQMGKSGMMNAATDPAMAAKMAQLMQNPNSRASQAAMSKM----MSPQMLKQMGGRDGVAKRMREMGGMPGMAGGGGMD 495
BLAST of mRNA_D-herbacea_F_contig110.912.1 vs. uniprot
Match: A0A7S3ZR98_9STRA (Signal recognition particle 54 kDa protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZR98_9STRA) HSP 1 Score: 553 bits (1426), Expect = 6.100e-192 Identity = 296/488 (60.66%), Postives = 385/488 (78.89%), Query Frame = 1
Query: 34 MVLQELGNKLTSALRRLHTDTVVDKEIIKAIVGEICRALLESDVNVQMVMKLRKNVEAKAEGLAEEGASAGAAQRRSIQKAVMDELTAMVDPTTAPYKMKKGKSNVVMFVGLQGAGKTTTIAKFAHYWQRKGWKVAMVCADTFRAGAFDQLRQNATKLRCPFYGSYSEADPVRIADEGVQQFRKDKYEVIIVDTSGRHKQEEALFDEMKEIQDTVRPDNTTLIIDATQGQAVLDQAKAFHDAVPVGSVIITKLDGHAKGGGALSAVAATNSPISFLGGGEHFDDLEAFDAQSFVSRLLGFGDMKGLVQQLQESQEGSGDPK--EMMERISKGKFTLRDLYTRLSATMKMGPVGKMMGMIPGMGEMAQMANNSGTQQMFKKNLYMMDSMTDDELDGKVDLSKSESRVLRIARGSGTHPDEVRALLKLHKHFEKVFGKVGKN--MKG-DASKVKQLQKNPALAKQHVDR-MDPKVVESLGGRQKVLEMMK 1479
MVLQELG KLT+AL+++ + TV+ +E++ ++ +I ALLE+DVNV++V +LRK ++ +A L EE AGA +R+ IQ+AV+DEL +VDP P+++KKGK NV+MFVGLQGAGKTTTIAKFA+Y+QRKG+K MVCADTFRAGA+DQL+QNATKLRCPFYGSY+EADPV IA EGV QFRK+KYEVIIVDTSGRH+QE ALF+EM+EI+ + PDN ++DATQGQAV +QA +FH+A+ +GSV++TKLDGHAKGGGALSAVAAT +PI FLG GEHFDD E F A+SFVSRLLG GDM LV+Q++++ GD K EMME+ SKG+FTLRD+Y + MK+GP+ K+M MIPG+ +M + G + K+ +YMMDSMTDDELDG+VDL+++ SRV R+ARGSGTHP EV+ LL+ HK FE V K+GK+ MKG D VKQ+Q+NP Q + + MDP++++ +GG Q ++ MMK
Sbjct: 1 MVLQELGGKLTAALQKMQSVTVISEEVLDKMLKDIAAALLEADVNVRVVGQLRKAIKTRA-ALEEE--VAGANRRKLIQRAVVDELVNIVDPGVTPHEVKKGKPNVIMFVGLQGAGKTTTIAKFANYYQRKGFKCCMVCADTFRAGAYDQLKQNATKLRCPFYGSYTEADPVAIAAEGVAQFRKEKYEVIIVDTSGRHRQEAALFEEMQEIRVAIEPDNVVFVLDATQGQAVHEQATSFHEAIDIGSVVVTKLDGHAKGGGALSAVAATGAPILFLGSGEHFDDFEPFVARSFVSRLLGMGDMSTLVKQIKDT---IGDDKNDEMMEKFSKGEFTLRDMYEQFENVMKLGPLSKVMAMIPGIPQMGGEGDEGGNR--LKRFMYMMDSMTDDELDGRVDLNRAPSRVDRVARGSGTHPMEVQMLLRCHKQFEGVVTKMGKSGLMKGGDEQMVKQMQRNPNQVLQQLHKTMDPRMLQQMGGAQNLMNMMK 480
BLAST of mRNA_D-herbacea_F_contig110.912.1 vs. uniprot
Match: A0A7S2WJL8_9STRA (Signal recognition particle 54 kDa protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WJL8_9STRA) HSP 1 Score: 553 bits (1425), Expect = 1.320e-191 Identity = 290/488 (59.43%), Postives = 381/488 (78.07%), Query Frame = 1
Query: 34 MVLQELGNKLTSALRRLHTDTVVDKEIIKAIVGEICRALLESDVNVQMVMKLRKNVEAKAEGLAEEGASAGAAQRRSIQKAVMDELTAMVDPTTAPYKMKKGKSNVVMFVGLQGAGKTTTIAKFAHYWQRKGWKVAMVCADTFRAGAFDQLRQNATKLRCPFYGSYSEADPVRIADEGVQQFRKDKYEVIIVDTSGRHKQEEALFDEMKEIQDTVRPDNTTLIIDATQGQAVLDQAKAFHDAVPVGSVIITKLDGHAKGGGALSAVAATNSPISFLGGGEHFDDLEAFDAQSFVSRLLGFGDMKGLVQQLQESQEGSGDPKEMMERISKGKFTLRDLYTRLSATMKMGPVGKMMGMIPGM--GEMAQMANNSGTQQMFKKNLYMMDSMTDDELDGKVDLSKSESRVLRIARGSGTHPDEVRALLKLHKHFEKVFGKVGKNMK---GDASKVKQLQKNPALAKQHVDR-MDPKVVESLGGRQKVLEMMK 1479
MVLQELG KL AL++LH TVVD+E++ A++ +I RALLE+DVNV++V +L+++++ + E A +G +RR IQKAVM+EL A++ P PY+MK+GK NV+MFVGLQG+GKTTTIAK+A+Y+ RKG+K MVCADTFRAGA+DQL+QNATKLRCPFYGSY+EADPV+IA +GV+QF+ +KYEVIIVDTSGRHKQE LF+EM+EI+ V PDN I+DATQGQAV DQA +FH+AV +GS +ITKLDGHAKGGGALSAVAAT +PI+FLG GEHFDDLE F A+SFVSRLLG GDM+GLV+ ++E+ +P E+M++ +KG FTLRD+Y + MK+GP+ K+M MIPG+ G M Q + + ++ K+ +YMMDSMTD ELDG+VDL KS R+ RI+RGSGTHP EV+ LL+ HK FE V K+GK+ GDA+ KQ+ +NP Q + + MDP++++ +GG Q V++MMK
Sbjct: 1 MVLQELGRKLEGALKKLHATTVVDEEVVTAMLNDIARALLEADVNVRVVGQLKQSIKMRVNL---EEAPSGNNRRRMIQKAVMEELVAILQPDGEPYQMKRGKPNVIMFVGLQGSGKTTTIAKYANYYLRKGFKCCMVCADTFRAGAYDQLKQNATKLRCPFYGSYTEADPVQIAQDGVEQFKSEKYEVIIVDTSGRHKQESVLFEEMQEIRAAVEPDNIVFILDATQGQAVHDQASSFHEAVDIGSCVITKLDGHAKGGGALSAVAATGAPITFLGSGEHFDDLEPFRAESFVSRLLGMGDMRGLVETIKETVGDDKNP-ELMDKFAKGVFTLRDMYEQFQNVMKLGPLSKVMSMIPGIPQGLMGQAGDQESSNRL-KRFMYMMDSMTDAELDGQVDLEKSPGRIERISRGSGTHPMEVQQLLRTHKQFEGVVKKMGKSSMLRGGDANMAKQISRNPNQCLQQIHKVMDPRMLQQMGGAQNVMKMMK 483
BLAST of mRNA_D-herbacea_F_contig110.912.1 vs. uniprot
Match: F0Y473_AURAN (Signal recognition particle 54 kDa protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y473_AURAN) HSP 1 Score: 553 bits (1424), Expect = 1.510e-191 Identity = 292/486 (60.08%), Postives = 380/486 (78.19%), Query Frame = 1
Query: 34 MVLQELGNKLTSALRRLHTDTVVDKEIIKAIVGEICRALLESDVNVQMVMKLRKNVEAKAEGLAEEGASAGAAQRRSIQKAVMDELTAMVDPTTAPYKMKKGKSNVVMFVGLQGAGKTTTIAKFAHYWQRKGWKVAMVCADTFRAGAFDQLRQNATKLRCPFYGSYSEADPVRIADEGVQQFRKDKYEVIIVDTSGRHKQEEALFDEMKEIQDTVRPDNTTLIIDATQGQAVLDQAKAFHDAVPVGSVIITKLDGHAKGGGALSAVAATNSPISFLGGGEHFDDLEAFDAQSFVSRLLGFGDMKGLVQQLQESQEGSGDPKEMMERISKGKFTLRDLYTRLSATMKMGPVGKMMGMIPGMGEMAQMANNSGTQQMFKKNLYMMDSMTDDELDGKVDLSKSESRVLRIARGSGTHPDEVRALLKLHKHFEKVFGKVGKN--MKG-DASKVKQLQKNPALAKQHVDR-MDPKVVESLGGRQKVLEMMK 1479
MVLQELG+KLT+AL ++ + TV+ +E++ ++ +I ALLE+DVNV++VM+LRK ++ +A L EE SAG +R+ IQKAV++EL M+DP ++MKKG NV+MFVGLQGAGKTTTIAKFA+++ RKG+K MVCADTFRAGA+DQLRQNATKLRCPFYGSY+EADPVRIA EGV QF+ +KYEVIIVDTSGRHKQE ALF+EM+EI+ + P N ++DATQGQAV +QA +FH+A+ +GSV+ITKLDGHAKGGGALSAVAAT +PI FLG GEHFDD E F+A SFVSRLLG GDM+GLV+Q++++ P E+ME+ SKG+FTLRD+Y + MK+GP+ K+M MIPG+ M + ++ K+ +YMMDSMTDDELD KVDL+KS SR+ R+ARGSG HP EV+ LLK HK FE V K+GK+ MKG DA+ KQ+Q+NP Q + + MDP++++ +GG Q ++ MM+
Sbjct: 1 MVLQELGSKLTAALHKMQSVTVISEEVLDKMLKDIAAALLEADVNVRVVMELRKAIKTRA-NLEEE--SAGTNRRKMIQKAVVEELAGMLDPGVKAHEMKKGSPNVIMFVGLQGAGKTTTIAKFANHYLRKGFKCCMVCADTFRAGAYDQLRQNATKLRCPFYGSYTEADPVRIAQEGVDQFKAEKYEVIIVDTSGRHKQETALFEEMQEIRAAIEPQNVIFVLDATQGQAVHEQASSFHEAIDIGSVVITKLDGHAKGGGALSAVAATGAPILFLGSGEHFDDFEPFNAHSFVSRLLGMGDMRGLVEQIKDTIGDDKQP-ELMEKFSKGQFTLRDMYEQFENVMKLGPLSKVMAMIPGIPSMMGGEGDESNNRL-KRFMYMMDSMTDDELDAKVDLNKSASRIERVARGSGCHPMEVQMLLKCHKQFESVVSKMGKSGLMKGGDAAMAKQMQRNPNQVMQQLHKAMDPRMLQQMGGAQNLMSMMQ 481
BLAST of mRNA_D-herbacea_F_contig110.912.1 vs. uniprot
Match: A0A4D9CXS1_9STRA (Signal recognition particle 54 kDa protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CXS1_9STRA) HSP 1 Score: 553 bits (1424), Expect = 4.370e-190 Identity = 300/507 (59.17%), Postives = 384/507 (75.74%), Query Frame = 1
Query: 34 MVLQELGNKLTSALRRLHTDTVVDKEIIKAIVGEICRALLESDVNVQMVMKLRKNVEAKAEGLAEEGASAGAAQRRSIQKAVMDELTAMVDPTTAPYKMKKGKSNVVMFVGLQGAGKTTTIAKFAHYWQRKGWKVAMVCADTFRAGAFDQLRQNATKLRCPFYGSYSEADPVRIADEGVQQFRKDKYEVIIVDTSGRHKQEEALFDEMKEIQDTVRPDNTTLIIDATQGQAVLDQAKAFHDAVPVGSVIITKLDGHAKGGGALSAVAATNSPISFLGGGEHFDDLEAFDAQSFVSRLLGFGDMKGLVQQLQE--SQEGSGDPKEMM-ERISKGKFTLRDLYTRLSATMKMGPVGKMMGMIPGM-------GEMAQMANNSGTQQMFKKNLYMMDSMTDDELDGKVDLSKSESRVLRIARGSGTHPDEVRALLKLHKHFEKVFGKVGKNMK--GDASKVKQLQKNPALAKQHVDR-MDPKVVESLGGRQKVLEMMK--NGGPGGGAAG 1509
MVLQELG+KLT ALRRL T TVV+ +++ ++ ++CRAL+ESDVN+++V LRK ++ K LA+ A AG +R+ +Q+AVM+EL +VD T PY+MKKGKSNV+MFVGLQG+GKTTTIAK+A+Y+QRKGWK MVCADTFRAGAFDQL+QNATKLR PFYGSY+EADPVRIA+EGVQQFR + YEVIIVDTSGRHKQEEALF+EMKEIQ VRPDN ++DATQGQAV DQA+ FH A VGSVI+TKLDGHAKGGGALSAVAAT +PI FLG GEHFDDL+ F+ SF+SRLLG GDM+G ++++ ++EG + +E M +R+ KG+FTLRD+Y + MK+GP+ K+MGM+PG GE + + K+ L MMDSMTD ELDGKVDL+KSESRV RIARGSG HP EV+ LLK + F ++F K+G M G+ +Q+ +NP + + +DP++++ +GG + +++MMK GG GGG G
Sbjct: 1 MVLQELGDKLTGALRRLQTTTVVNDDVLNDLLQDVCRALVESDVNIKVVATLRKGIKEKV-NLAD--APAGLNRRKMVQRAVMEELVRLVDSGTKPYQMKKGKSNVIMFVGLQGSGKTTTIAKYANYYQRKGWKTCMVCADTFRAGAFDQLKQNATKLRVPFYGSYTEADPVRIAEEGVQQFRSEGYEVIIVDTSGRHKQEEALFEEMKEIQAAVRPDNVVYVMDATQGQAVFDQAQGFHQAATVGSVIVTKLDGHAKGGGALSAVAATGAPIIFLGSGEHFDDLDVFNPGSFISRLLGLGDMRGFLEEVSSLGAREGGKERQEAMAQRLVKGQFTLRDMYEQFENVMKLGPLSKVMGMLPGFPSFLMGGGEGGRGGQDEAATGRLKRFLTMMDSMTDAELDGKVDLNKSESRVNRIARGSGAHPMEVQFLLKTYAQFSQMFKKMGPMMLKGGEGGIQRQMARNPGGVMNQLSKAVDPRMLQQMGGAKGMMDMMKAMGGGSGGGLGG 504
BLAST of mRNA_D-herbacea_F_contig110.912.1 vs. uniprot
Match: A0A7S4VL55_9STRA (Signal recognition particle 54 kDa protein (Fragment) n=6 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VL55_9STRA) HSP 1 Score: 546 bits (1406), Expect = 3.710e-188 Identity = 295/510 (57.84%), Postives = 385/510 (75.49%), Query Frame = 1
Query: 34 MVLQELGNKLTSALRRLHTDT-VVDKEIIKAIVGEICRALLESDVNVQMVMKLRKNVEAKAEGLAEEGASAGAAQR---RSIQKAVMDELTAMVDPT-TAPYKMKKGKSNVVMFVGLQGAGKTTTIAKFAHYWQRKGWKVAMVCADTFRAGAFDQLRQNATKLRCPFYGSYSEADPVRIADEGVQQFRKDKYEVIIVDTSGRHKQEEALFDEMKEIQDTVRPDNTTLIIDATQGQAVLDQAKAFHDAVPVGSVIITKLDGHAKGGGALSAVAATNSPISFLGGGEHFDDLEAFDAQSFVSRLLGFGDMKGLVQQLQESQEGSGDPKEMMERISKGKFTLRDLYTRLSATMKMGPVGKMMGMIPGMGE--MAQMANNSGTQQMFKKNLYMMDSMTDDELDGKVDLSKS-----ESRVLRIARGSGTHPDEVRALLKLHKHFEKVFGKVGKN-MKGDASK------VKQLQKNPALAKQHVDRMDPKVVESLGGRQKVLEMMK---NGGPGG 1497
MVL ELG KL +LR++H+ + +D E + I+ EI RAL+ESDVNV++VM +R+N++ + L E+ GA R +QK+VM+ELT+M+ P PY M++GK NV++FVGLQGAGKTT+I K+A+Y+QR+GWK MVCADTFRAGAFDQL+QNATKLR PFYGSY+EADPV IA+EGV QF +D YEVIIVDTSGRH+QE ALF+EM+EI V PDNT ++DATQGQAV DQA+AFHD+VPVGSVI+TKLDGHAKGGGALSAVAATNSPI FLG GEHFDD + F+AQSFVS+LLGFGD++G ++++ +S S +E+ME++SKG+FTLRD+Y + + MKMGP+ K+MGM+PG+ E + + A++ GT ++ KK +YMMDSMTD ELDGKVD+ K ESR+ RIARGSGTHP EV+ +L+ HK FE V ++GK+ M G A Q+++NP + MDPK+++ +GG + V MMK +GG GG
Sbjct: 1 MVLAELGGKLRESLRKIHSSSGAIDSEQLNVILSEITRALIESDVNVKLVMTMRENIKNRVGELVEKAEEGGAGSHNVNRLVQKSVMEELTSMLTPKENKPYVMRRGKPNVILFVGLQGAGKTTSIGKYANYYQRRGWKTCMVCADTFRAGAFDQLKQNATKLRVPFYGSYTEADPVAIAEEGVAQFAEDGYEVIIVDTSGRHRQESALFEEMQEISAAVSPDNTVFVMDATQGQAVYDQAQAFHDSVPVGSVIVTKLDGHAKGGGALSAVAATNSPIIFLGSGEHFDDFDPFNAQSFVSKLLGFGDVRGFMEEM-KSVHDSKTQEELMEKMSKGEFTLRDMYKQFQSIMKMGPLNKVMGMMPGVPEYLIPKSADDEGTLRL-KKFMYMMDSMTDAELDGKVDMHKKYDPAVESRIKRIARGSGTHPKEVQMMLQAHKQFESVISRMGKSGMMGKAGAENQRKLAAQMKRNPNQVMSQLKNMDPKILKQMGGEENVRNMMKQYQSGGMGG 508
BLAST of mRNA_D-herbacea_F_contig110.912.1 vs. uniprot
Match: A0A448YZ54_9STRA (SRP54 domain-containing protein n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448YZ54_9STRA) HSP 1 Score: 539 bits (1388), Expect = 2.470e-184 Identity = 301/517 (58.22%), Postives = 377/517 (72.92%), Query Frame = 1
Query: 34 MVLQELGNKLTSALRRLHTDTV-VDKEIIKAIVGEICRALLESDVNVQMVMKLRKNVEAKAEGL--------AEEGASAGAAQRRS-----IQKAVMDELTAMVDPTTAPYKMKKGKSNVVMFVGLQGAGKTTTIAKFAHYWQRKGWKVAMVCADTFRAGAFDQLRQNATKLRCPFYGSYSEADPVRIADEGVQQFRKDKYEVIIVDTSGRHKQEEALFDEMKEIQDTVRPDNTTLIIDATQGQAVLDQAKAFHDAVPVGSVIITKLDGHAKGGGALSAVAATNSPISFLGGGEHFDDLEAFDAQSFVSRLLGFGDMKGLVQQLQESQEGSGDPKE-MMERISKGKFTLRDLYTRLSATMKMGPVGKMMGMIPGMGE-MAQMANNSGTQQMFKKNLYMMDSMTDDELDGKVDLSKSE-----SRVLRIARGSGTHPDEVRALLKLHKHFEKVFGKVGKN-MKGDASKVKQ------LQKNPALAKQHVDRMDPKVVESLGGRQKVLEMMKNGGPGGG 1500
MVL ELG KL +LR+LHT + V + ++ E+ RAL+ESDVNV++VM LR NV+ K E L EE + QR S +QKAV+DEL +++P+ PY MK+GK NV++FVGLQGAGKTTTIAKFA+Y+QR+GWK AMVCADTFRAGAFDQL+QNATKLR PFYGSY++ADPV IA+EGV QF K+ YEVIIVDTSGRH+QE L +EM+EI V PDN L++DATQGQAV DQA+AF +AV VGSV+ITKLDGHAKGGGALSAVAAT SPI FLG GEHFDDLE F+AQSF+S+LLGFGD++GL+ E+ GS D KE +ME++SKG+FTLRD+Y + M MGP+ KMMGM+PGM E + +S + KK LYMMDSMTD ELDGKVD S E SR+ RIA GSG HP EV+ LL++HK FE + K+GK+ M G + +Q +++NP Q +++MDPK++E +GGR++V M+N GGG
Sbjct: 1 MVLAELGGKLRESLRKLHTSSGHVTATKLNQVLTEVTRALIESDVNVRLVMTLRNNVKKKVERLIEDDEDSETEEDSDXKKEQRASNVSKMVQKAVVDELVGLLEPSRKPYGMKRGKPNVILFVGLQGAGKTTTIAKFANYYQRRGWKTAMVCADTFRAGAFDQLKQNATKLRVPFYGSYTQADPVAIAEEGVDQFVKEHYEVIIVDTSGRHRQEAGLLEEMQEISAAVAPDNVVLVMDATQGQAVFDQAQAFSNAVDVGSVVITKLDGHAKGGGALSAVAATESPIIFLGSGEHFDDLEPFNAQSFISKLLGFGDVRGLM----EAMNGSPDDKEELMEKMSKGEFTLRDMYKQFQRVMNMGPLNKMMGMVPGMPEYLVPKGGDSDSNNRLKKFLYMMDSMTDKELDGKVDFSDHEEPQTMSRIRRIAAGSGNHPKEVQMLLQVHKQFEGMVSKMGKSGMVGKQAXAQQQALAAQMRRNPNFINQRLNQMDPKLLEQMGGREQVKSHMENMARGGG 513
BLAST of mRNA_D-herbacea_F_contig110.912.1 vs. uniprot
Match: A0A7S1TR72_9STRA (Signal recognition particle 54 kDa protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TR72_9STRA) HSP 1 Score: 528 bits (1360), Expect = 1.190e-181 Identity = 287/504 (56.94%), Postives = 378/504 (75.00%), Query Frame = 1
Query: 34 MVLQELGNKLTSALRRLHTDTVVDKEIIKAIVGEICRALLESDVNVQMVMKLRKNVEAKAEGLAEEGASAGAAQRRSIQKAVMDELTAMVDPTTAPYKMKKGKSNVVMFVGLQGAGKTTTIAKFAHYWQRKGWKVAMVCADTFRAGAFDQLRQNATKLRCPFYGSYSEADPVRIADEGVQQFRKDKYEVIIVDTSGRHKQEEALFDEMKEIQDTVRPDNTTLIIDATQGQAVLDQAKAFHDAVPVGSVIITKLDGHAKGGGALSAVAATNSPISFLGGGEHFDDLEAFDAQSFVSRLLGFGDMKGLVQQLQESQEGSGDPKEMMERISKGKFTLRDLYTRLSATMKMGPVGKMMGMIPGMGEMAQMANNSGTQQM---FKKNLYMMDSMTDDELDGKVD--LSKSESRVLRIARGSGTHPDEVRALLKLHKHFEKVFGKVGKN--MKG-DASKVKQLQKNPALAKQHVDR-MDPKVVESLGGRQKVLEMMKN-------GGPGG 1497
MVL ELG+K+T+AL RL T+VD+E++ ++ +I RALLE+DVNV++V + R+ V+ K LA+ ++AG +R+ IQ+AV +ELT+M+D PYK +KG+ NV+MFVGLQG+GKTTT+AK AH++QRKGW+ AMVCADTFRAGAFDQL+QNATKLRCPFYGSY+EADPVRIA+EGV QFR D YE+IIVDTSGRH+QE+ALF+EM+EI+ V PD+ L++D TQGQAV QA AF+D+V VG+V++TKLDGHAKGGGAL AVAAT+SPI FLG GEHFDDL+ F SFVSRLLG GD++GL+++L+E + +E+ ER SKG+FTLRD+Y + + MK+GP+GK+MGM+PGM G Q K+ + MMDSMTD ELDG++D L S SR+ RIA GSG+HP EV+ LL+ HK FE V K+GK+ M+G D KQ+ +NP + + M+P+++ +GG Q V++MMK GGPGG
Sbjct: 1 MVLGELGSKITNALHRLQASTIVDEEVLTTMLADISRALLEADVNVRLVGEFREKVKIKV-NLAD--SAAGMNRRKVIQRAVFEELTSMLDAGVVPYKPRKGRPNVIMFVGLQGSGKTTTVAKVAHFYQRKGWRTAMVCADTFRAGAFDQLKQNATKLRCPFYGSYTEADPVRIAEEGVAQFRADNYEIIIVDTSGRHRQEDALFEEMQEIRAAVEPDHIILVVDGTQGQAVFAQASAFNDSVDVGAVVLTKLDGHAKGGGALGAVAATSSPIQFLGTGEHFDDLDIFVPSSFVSRLLGMGDVRGLMEELKEVVDEEKQ-EELAERFSKGQFTLRDMYEQFQSVMKLGPIGKVMGMLPGMPSHLLGGGGPGGDQSTERVKRFMTMMDSMTDAELDGQMDKDLENSPSRIERIAYGSGSHPLEVQMLLRTHKQFEGVVKKMGKSSLMRGNDEQLAKQMARNPKQVLGQISKAMNPRMLAQMGGAQNVMQMMKEMSKMDGGGGPGG 500
BLAST of mRNA_D-herbacea_F_contig110.912.1 vs. uniprot
Match: A0A7R9W6K7_9STRA (Signal recognition particle 54 kDa protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W6K7_9STRA) HSP 1 Score: 525 bits (1351), Expect = 2.180e-179 Identity = 289/502 (57.57%), Postives = 380/502 (75.70%), Query Frame = 1
Query: 34 MVLQELGNKLTSALRRLHTDT-VVDKEIIKAIVGEICRALLESDVNVQMVMKLRKNVEAKAEGLAEEGA---SAGAAQ-RRSIQKAVMDELTAMVDPTT--APYKMKKGKSNVVMFVGLQGAGKTTTIAKFAHYWQRKGWKVAMVCADTFRAGAFDQLRQNATKLRCPFYGSYSEADPVRIADEGVQQFRKDKYEVIIVDTSGRHKQEEALFDEMKEIQDTVRPDNTTLIIDATQGQAVLDQAKAFHDAVPVGSVIITKLDGHAKGGGALSAVAATNSPISFLGGGEHFDDLEAFDAQSFVSRLLGFGDMKGLVQQLQESQEGSGDPK---EMMERISKGKFTLRDLYTRLSATMKMGPVGKMMGMIPGMGE-MAQMANNSGTQQMFKKNLYMMDSMTDDELDGKVDLSKS-----ESRVLRIARGSGTHPDEVRALLKLHKHFEKVFGKVGKN-MKGDASKVKQLQ------KNPALAKQHVDRMDPKVVESLGGRQKVLE 1470
MVL ELG KL ++LR+L + VD ++ I+ +I RAL+E+DVNV++VM LR NV+ + + E+ A S+G+A R +Q+AV+DELT+M+ P P+ M++GK NV++FVGLQGAGKTT+IAK+A+Y+QR+GWK AMVCADTFRAGAFDQL+QNATKLR PFYGSY+EADPV IA++GV QF + YEVIIVDTSGRH+QE ALF+EM+EI VRPDNT ++DATQGQAV DQA AF +AV VGSVI+TKLDGHAKGGGALSAVAAT+SPI FLG GEHFDD + F+A+SFVS+LLG+GD++GL+++++ Q DPK E+ME+++KG+FTLRD+Y + MKMG +GK+MGM+PG+ E + + + + + KK +YMMDSMTD ELDGKVD+ K ESR+ RIA+GSGTHP EV+ LL+ HK FE V K+GK+ M G A +Q Q KNPAL +Q + MDP V++S+GG +++
Sbjct: 1 MVLAELGGKLRNSLRKLSSGGGSVDTALLNEILSDIGRALIEADVNVKLVMSLRTNVKNRVGKIVEDSAGAESSGSANVSRLVQRAVVDELTSMLTPNADVKPHTMRRGKPNVILFVGLQGAGKTTSIAKYANYYQRRGWKTAMVCADTFRAGAFDQLKQNATKLRVPFYGSYTEADPVAIAEDGVAQFADEGYEVIIVDTSGRHRQESALFEEMQEISSAVRPDNTVFVMDATQGQAVYDQALAFQEAVDVGSVIVTKLDGHAKGGGALSAVAATDSPIIFLGSGEHFDDFDPFNAKSFVSKLLGYGDVRGLMEEMKSVQ----DPKTQEELMEKMAKGQFTLRDMYNQFQNMMKMGGMGKVMGMMPGIPEYLIPKSGDDESTRRLKKFMYMMDSMTDKELDGKVDMHKKGDPTVESRIRRIAKGSGTHPKEVQMLLQCHKQFEGVVSKMGKSGMMGKAGSARQKQVMEQMRKNPALMQQQLKNMDPNVLKSMGGSGNMMQ 498 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig110.912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig110.912.1 >prot_D-herbacea_F_contig110.912.1 ID=prot_D-herbacea_F_contig110.912.1|Name=mRNA_D-herbacea_F_contig110.912.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=509bp LVPLVHADLADMVLQELGNKLTSALRRLHTDTVVDKEIIKAIVGEICRALback to top mRNA from alignment at D-herbacea_F_contig110:606812..615926- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig110.912.1 ID=mRNA_D-herbacea_F_contig110.912.1|Name=mRNA_D-herbacea_F_contig110.912.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=9115bp|location=Sequence derived from alignment at D-herbacea_F_contig110:606812..615926- (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig110:606812..615926- >mRNA_D-herbacea_F_contig110.912.1 ID=mRNA_D-herbacea_F_contig110.912.1|Name=mRNA_D-herbacea_F_contig110.912.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=3054bp|location=Sequence derived from alignment at D-herbacea_F_contig110:606812..615926- (Desmarestia herbacea DmunF female)back to top |