mRNA_D-herbacea_F_contig11.885.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig11.885.1
Unique NamemRNA_D-herbacea_F_contig11.885.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig11.885.1 vs. uniprot
Match: D8LE90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE90_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 2.500e-32
Identity = 59/72 (81.94%), Postives = 64/72 (88.89%), Query Frame = 1 
Query:  142 GMSFFALRCFSCQFFQVNQRTKSGKWKCRVCGEGQSIVKVWGRGGHAKDVRGLVMELNAAAGRGEDPTSTVK 357
            G+ F ALRCFSCQ FQVNQRTKSGKWKCR+CGEGQSIVKVWGRGGHAKDVRGLVM LNAAAG GED  + ++
Sbjct:    5 GIVFLALRCFSCQCFQVNQRTKSGKWKCRMCGEGQSIVKVWGRGGHAKDVRGLVMALNAAAGGGEDLNNVLR 76
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BLAST of mRNA_D-herbacea_F_contig11.885.1 vs. uniprot
Match: A0A3B3T2R6_9TELE (Uncharacterized protein n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3T2R6_9TELE)

HSP 1 Score: 70.9 bits (172), Expect = 1.900e-13
Identity = 35/62 (56.45%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:  142 GMSFFALRCFSCQFFQVNQRTKSGKWKCRVCGEGQSIVKVWGRGGHAKDVRGLVMELNAAAG 327
            G  F  LRCFSCQ FQV+Q  KS KW C++CGE QS++KV+G+G  A D R  V +LNA  G
Sbjct:    4 GQEFNVLRCFSCQTFQVHQVKKSKKWNCKMCGEKQSLLKVYGQGSGA-DCRRHVQKLNALRG 64
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BLAST of mRNA_D-herbacea_F_contig11.885.1 vs. uniprot
Match: UPI0015B2AA0F (MRN complex-interacting protein isoform X1 n=2 Tax=Anguilla anguilla TaxID=7936 RepID=UPI0015B2AA0F)

HSP 1 Score: 73.6 bits (179), Expect = 3.360e-13
Identity = 40/90 (44.44%), Postives = 52/90 (57.78%), Query Frame = 1 
Query:  151 FFALRCFSCQFFQVNQRTKSGKWKCRVCGEGQSIVKVWGRGGHAKDVRGLVMELNAAAGRGEDPTSTVKYLALQKESQHLRQGAGAAATC 420
            F  LRCFSCQ FQV+Q  KS KW C++CGE QS+VKV+GRG  A D R  V +LN+  G   +          + E + L++    A TC
Sbjct:    5 FHVLRCFSCQTFQVHQVKKSKKWSCKMCGEKQSLVKVYGRGSGA-DCRRHVQKLNSLRGELHEAEHARFSWEPEDEEEELKEEGDEALTC 93
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BLAST of mRNA_D-herbacea_F_contig11.885.1 vs. uniprot
Match: A0A8C9R4G2_SCLFO (MRN complex interacting protein n=2 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9R4G2_SCLFO)

HSP 1 Score: 73.2 bits (178), Expect = 1.540e-12
Identity = 38/85 (44.71%), Postives = 50/85 (58.82%), Query Frame = 1 
Query:  142 GMSFFALRCFSCQFFQVNQRTKSGKWKCRVCGEGQSIVKVWGRGGHAKDVRGLVMELNAAAGRGEDPTSTVKYLALQKESQHLRQ 396
            G  F  LRCFSCQ FQV Q  KS KW C++CGE QS++KV+G+G  A D R  V +LNA  G   +      YLA+    + + +
Sbjct:    2 GQEFHVLRCFSCQTFQVQQVKKSKKWSCKMCGEKQSLIKVYGQGSGA-DCRRHVQKLNALRG---EMVQAEDYLAMTSRQETVTE 82
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BLAST of mRNA_D-herbacea_F_contig11.885.1 vs. uniprot
Match: UPI000CD61316 (MRN complex-interacting protein isoform X1 n=2 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=UPI000CD61316)

HSP 1 Score: 72.4 bits (176), Expect = 2.840e-12
Identity = 39/87 (44.83%), Postives = 51/87 (58.62%), Query Frame = 1 
Query:  142 GMSFFALRCFSCQFFQVNQRTKSGKWKCRVCGEGQSIVKVWGRGGHAKDVRGLVMELNAAAGRGEDPTSTVKYLALQKESQHLRQGA 402
            G  F  LRCFSCQ FQV+Q  KS KW C++CGE QS++KV+G+G  A D R  V +LNA  G           L  ++E+   R+ A
Sbjct:    2 GQEFNVLRCFSCQTFQVHQVKKSKKWNCKMCGEKQSLLKVYGQGSGA-DCRRHVQKLNALRGEVLQAEDMRASLPRKQEASETRKSA 87
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BLAST of mRNA_D-herbacea_F_contig11.885.1 vs. uniprot
Match: UPI000D72EB99 (uncharacterized protein LOC112561384 isoform X1 n=3 Tax=Pomacea canaliculata TaxID=400727 RepID=UPI000D72EB99)

HSP 1 Score: 71.2 bits (173), Expect = 8.660e-12
Identity = 32/61 (52.46%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:  145 MSFFALRCFSCQFFQVNQRTKSGKWKCRVCGEGQSIVKVWGRGGHAKDVRGLVMELNAAAG 327
            ++F  L+C+SCQ +QV+Q  KS KWKC++CGE QS++KV+GRG   KD R  V +LN   G
Sbjct:    2 LNFHVLQCYSCQTYQVHQEAKSKKWKCKLCGEQQSVIKVFGRGS-GKDCRQHVQKLNMLRG 61
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BLAST of mRNA_D-herbacea_F_contig11.885.1 vs. uniprot
Match: UPI001CFC435E (MRN complex-interacting protein n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFC435E)

HSP 1 Score: 67.0 bits (162), Expect = 9.200e-12
Identity = 37/84 (44.05%), Postives = 48/84 (57.14%), Query Frame = 1 
Query:  151 FFALRCFSCQFFQVNQRTKSGKWKCRVCGEGQSIVKVWGRGGHAKDVRGLVMELNAAAGRGEDPTSTVKYLALQKESQHLRQGA 402
            F  LRCFSC+ FQV+Q  K  +W+C++CGE QSI+KV+G G  A D R  V +LN   G   D  +     A   + Q L  GA
Sbjct:    5 FHVLRCFSCKTFQVHQVKKDKRWRCKLCGEKQSIIKVYGEGTGA-DCRHHVQKLNMMQG---DKQTGADLAAWSTDGQQLSDGA 84
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BLAST of mRNA_D-herbacea_F_contig11.885.1 vs. uniprot
Match: UPI001BB2BCC7 (MRN complex-interacting protein-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB2BCC7)

HSP 1 Score: 66.6 bits (161), Expect = 9.380e-12
Identity = 32/63 (50.79%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:  151 FFALRCFSCQFFQVNQRTKSGKWKCRVCGEGQSIVKVWGRGGHAKDVRGLVMELNAAAGRGED 339
            F  +RCF+C  FQV+Q  K  KW+C++CGE QS+ KV+G+G   KD R LV  LN  AG+  D
Sbjct:    5 FHVIRCFACLVFQVHQVKKKPKWQCKMCGEKQSVRKVYGKGA-GKDCRLLVQSLNMTAGQITD 66
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BLAST of mRNA_D-herbacea_F_contig11.885.1 vs. uniprot
Match: A0A667Z022_9TELE (Uncharacterized protein n=1 Tax=Myripristis murdjan TaxID=586833 RepID=A0A667Z022_9TELE)

HSP 1 Score: 67.0 bits (162), Expect = 1.830e-11
Identity = 33/66 (50.00%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:  130 SKMEGMSFFALRCFSCQFFQVNQRTKSGKWKCRVCGEGQSIVKVWGRGGHAKDVRGLVMELNAAAG 327
            S      F  LRCFSCQ FQV Q  KS +W+C++CGE Q+++K +GRG  A D R  V +LNA  G
Sbjct:   49 SSAMSQQFQVLRCFSCQTFQVQQVKKSSRWRCKLCGEKQTLLKEFGRGSGA-DCRRHVQKLNAMRG 113
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BLAST of mRNA_D-herbacea_F_contig11.885.1 vs. uniprot
Match: UPI001B7E7536 (MRN complex-interacting protein n=1 Tax=Polyodon spathula TaxID=7913 RepID=UPI001B7E7536)

HSP 1 Score: 68.2 bits (165), Expect = 1.010e-10
Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:  151 FFALRCFSCQFFQVNQRTKSGKWKCRVCGEGQSIVKVWGRGGHAKDVRGLVMELNAAAG 327
            F  LRCFSC+ FQV+Q  K  KWKC++C E QSI+KV+G+G  A D RG V +LN   G
Sbjct:    5 FHVLRCFSCKTFQVHQVNKCKKWKCKICEEKQSIIKVYGQGSGA-DCRGHVQKLNMMQG 62
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig11.885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE90_ECTSI2.500e-3281.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A3B3T2R6_9TELE1.900e-1356.45Uncharacterized protein n=1 Tax=Paramormyrops king... [more]
UPI0015B2AA0F3.360e-1344.44MRN complex-interacting protein isoform X1 n=2 Tax... [more]
A0A8C9R4G2_SCLFO1.540e-1244.71MRN complex interacting protein n=2 Tax=Scleropage... [more]
UPI000CD613162.840e-1244.83MRN complex-interacting protein isoform X1 n=2 Tax... [more]
UPI000D72EB998.660e-1252.46uncharacterized protein LOC112561384 isoform X1 n=... [more]
UPI001CFC435E9.200e-1244.05MRN complex-interacting protein n=1 Tax=Protopteru... [more]
UPI001BB2BCC79.380e-1250.79MRN complex-interacting protein-like n=1 Tax=Lytec... [more]
A0A667Z022_9TELE1.830e-1150.00Uncharacterized protein n=1 Tax=Myripristis murdja... [more]
UPI001B7E75361.010e-1055.93MRN complex-interacting protein n=1 Tax=Polyodon s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig11contigD-herbacea_F_contig11:1487288..1488940 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score65.9
Seed ortholog evalue1.2e-08
Seed eggNOG ortholog7955.ENSDARP00000101365
Preferred nameC5orf45
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000075,GO:0000077,GO:0000278,GO:0001932,GO:0001934,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006282,GO:0006950,GO:0006974,GO:0007049,GO:0007093,GO:0007095,GO:0007346,GO:0008104,GO:0008150,GO:0009314,GO:0009628,GO:0009893,GO:0009987,GO:0010212,GO:0010389,GO:0010562,GO:0010564,GO:0010569,GO:0010604,GO:0010948,GO:0010972,GO:0019219,GO:0019220,GO:0019222,GO:0022402,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031570,GO:0031572,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0033036,GO:0033365,GO:0033554,GO:0033674,GO:0034502,GO:0034613,GO:0042325,GO:0042327,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043549,GO:0044093,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044773,GO:0044774,GO:0044818,GO:0045739,GO:0045786,GO:0045859,GO:0045860,GO:0045911,GO:0045930,GO:0045935,GO:0045937,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051641,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0070727,GO:0071168,GO:0080090,GO:0080134,GO:0080135,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903047,GO:1905168,GO:2000779,GO:2000781,GO:2001020,GO:2001022,GO:2001032
EggNOG free text desc.UPF0544 protein C5orf45 homolog
EggNOG OGs2CI02@1,2S8YD@2759,3A8CJ@33154,3BTXT@33208,3CXDV@33213,48BBC@7711,493XQ@7742,4A4JZ@7898
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_001350.1
COG Functional cat.S
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
Exons3
Model size425
Cds size288
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig11.885.1prot_D-herbacea_F_contig11.885.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig11 1487288..1488805 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927513.1785927-CDS-D-herbacea_F_contig11:1487287..14874791622927513.1785927-CDS-D-herbacea_F_contig11:1487287..1487479Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 1487288..1487479 -
1690790209.7951584-CDS-D-herbacea_F_contig11:1487287..14874791690790209.7951584-CDS-D-herbacea_F_contig11:1487287..1487479Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 1487288..1487479 -
1622927513.194203-CDS-D-herbacea_F_contig11:1488097..14881481622927513.194203-CDS-D-herbacea_F_contig11:1488097..1488148Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 1488098..1488148 -
1690790209.804274-CDS-D-herbacea_F_contig11:1488097..14881481690790209.804274-CDS-D-herbacea_F_contig11:1488097..1488148Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 1488098..1488148 -
1622927513.203304-CDS-D-herbacea_F_contig11:1488760..14888051622927513.203304-CDS-D-herbacea_F_contig11:1488760..1488805Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 1488761..1488805 -
1690790209.8114755-CDS-D-herbacea_F_contig11:1488760..14888051690790209.8114755-CDS-D-herbacea_F_contig11:1488760..1488805Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 1488761..1488805 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927513.2134144-UTR-D-herbacea_F_contig11:1488805..14889401622927513.2134144-UTR-D-herbacea_F_contig11:1488805..1488940Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig11 1488806..1488940 -
1690790209.818594-UTR-D-herbacea_F_contig11:1488805..14889401690790209.818594-UTR-D-herbacea_F_contig11:1488805..1488940Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig11 1488806..1488940 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig11.885.1

>prot_D-herbacea_F_contig11.885.1 ID=prot_D-herbacea_F_contig11.885.1|Name=mRNA_D-herbacea_F_contig11.885.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=96bp
MEGMSFFALRCFSCQFFQVNQRTKSGKWKCRVCGEGQSIVKVWGRGGHAK
DVRGLVMELNAAAGRGEDPTSTVKYLALQKESQHLRQGAGAAATCT
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mRNA from alignment at D-herbacea_F_contig11:1487288..1488940-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig11.885.1 ID=mRNA_D-herbacea_F_contig11.885.1|Name=mRNA_D-herbacea_F_contig11.885.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1653bp|location=Sequence derived from alignment at D-herbacea_F_contig11:1487288..1488940- (Desmarestia herbacea DmunF female)
GACTGACTTCCCTCTACTCCCACACTGTTTATGTTACCGCTGCTGTCGGT
TTCTCTATAGGGAGAAGAGGGCCAAGGCTATCCTTTGTTGGGTTTGATTT
TGGCAACAGACACCAGAGTCGTTTCGTTTTCAAAAATGGAGGGAATGTCG
TTCTTTGCCTTGCGCTGCTTCTCCTGCCAGGTGGGATCCCACATCTGACT
CCACGCTGGGCTGTTGAGACGCTGTCTTTTTGTTGAGCTAGCACTGTCTT
GTTGTGGAACTAGCTCTGCAGTGAAAGGCGTGACGATATGATTGTGACCT
CATGTGTGTGGGGAAAAGTAGTTTGAAAGGGCGTTTGCAATTTTTCGTAT
CATGACTGGTACTCGTAGCGCAGAGGTGTCACCCCAGAACCGAACGAAGC
AGCAAATAAGCAGTGTTTGCATCATGATAATAATGATGATGATGATGATG
ACCTTTGGTTGTTGGTTGTATTGCACACCCCACTTTTCAACTACGCGTAG
CAAAGTGTCGTCGTCATGCTGCTCCTTCTATTGCGCCCCGCGCCTAACAG
GAAATCCTCTACAAGTAGTATTGATATCAGGCTTACGGTTGATGCGAAGT
ATATTGTGAACTCCACTGGTGGAGCTGCTTCACAGTTTGAACGTTTGAAC
CAGAGTACCACCGAGAACGACAAAACTCATGTGACAGTCGACAACAGACA
GTAGTACTCGTAGTTGTATAATAGTATAATAGTATCACTGACTCTTCGTG
TCCCTCTCTTGTCTGGTATGCCCGTTCTCCGCGGTGCTGCAGTTTTTTCA
AGTCAACCAGAGGACTAAGTCGGGCAAGTGGAAGTGCAGGGTGGTGAGTC
TTGTGTCCACCGATTGTTGCCCGCATACGAAGTATGAGTGTGGTTCCGAA
GTCGTTTGTTTGAATCAACTATCTAAACTCTAAACTAATCTAATCCTGTA
CGAGTACGTAGTACAACGGTAGTAGTACAGTATGACCAACCGACCTCTAT
ATTGCATCGATCGATACATCGAGCATCGATACTGCAGAACCATGAGCAGC
AAGTAAATACGAAGTATTAGCACTTGGACACCTCGGTGTATAATCGCGAC
CGTGCTGTTGGACTGTTGTACTGCTCGTACTTGTACTCGTTCGTAATATT
AAATATATTGTAGAAAACTCCAGCTGCCCCGCTAACCTCATCTGTCAGAC
TGCGCAATTGCCACACTATATAACGGGACATGCTGCTGTACGGTGCAGTA
CTGCGGTGGACATTTTCGATAATTGTATTGCCGTATTCCGTACACCGTAT
CATATCATGCGAGTCTTTTAACGCTTTCGGTTATCTCTCCTAACCTTGAT
ACCGAAAAGTAAGTGTTGAACGCGGACGAGAGATCCACAAGAGGAATGAT
CGACCACTATTCCCGTAATTGGAATGTCGCTTCCCTTGATATGTCTCAAT
TCCCCTCCCAGTGCGGTGAGGGTCAAAGTATCGTCAAGGTATGGGGGCGA
GGAGGCCACGCCAAGGACGTCCGAGGACTAGTCATGGAGCTCAACGCCGC
GGCAGGTCGAGGGGAGGACCCGACATCAACCGTAAAATACTTGGCTCTTC
AAAAAGAATCGCAACACCTGCGACAGGGTGCAGGCGCGGCCGCAACCTGT
ACG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig11:1487288..1488940-

>mRNA_D-herbacea_F_contig11.885.1 ID=mRNA_D-herbacea_F_contig11.885.1|Name=mRNA_D-herbacea_F_contig11.885.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=576bp|location=Sequence derived from alignment at D-herbacea_F_contig11:1487288..1488940- (Desmarestia herbacea DmunF female)
ATGGAGGGAATGTCGTTCTTTGCCTTGCGCTGCTTCTCCTGCCAGATGGA
GGGAATGTCGTTCTTTGCCTTGCGCTGCTTCTCCTGCCAGTTTTTTCAAG
TCAACCAGAGGACTAAGTCGGGCAAGTGGAAGTGCAGGGTGTTTTTTCAA
GTCAACCAGAGGACTAAGTCGGGCAAGTGGAAGTGCAGGGTGTGCGGTGA
GGGTCAAAGTATCGTCAAGGTATGGGGGCGAGGAGGCCACGCCAAGGACG
TCCGAGGACTAGTCATGGAGCTCAACGCCGCGGCAGGTCGAGGGGAGGAC
CCGACATCAACCGTAAAATACTTGGCTCTTCAAAAAGAATCGCAACACCT
GCGACAGGGTGCAGGCGCGGCCGCAACCTGTACGTGCGGTGAGGGTCAAA
GTATCGTCAAGGTATGGGGGCGAGGAGGCCACGCCAAGGACGTCCGAGGA
CTAGTCATGGAGCTCAACGCCGCGGCAGGTCGAGGGGAGGACCCGACATC
AACCGTAAAATACTTGGCTCTTCAAAAAGAATCGCAACACCTGCGACAGG
GTGCAGGCGCGGCCGCAACCTGTACG
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