mRNA_D-herbacea_F_contig107.668.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig107.668.1
Unique NamemRNA_D-herbacea_F_contig107.668.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig107.668.1 vs. uniprot
Match: A0A6H5LQR5_9PHAE (JmjC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQR5_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 6.670e-6
Identity = 46/136 (33.82%), Postives = 61/136 (44.85%), Query Frame = 3 
Query:   72 VILASSWLGPGATARVLTRHFGVRLPSMGELRMAKHHAVNVLSSVRGSEEQYEELSESRSENRPTSDNTAVFIARNEEADKRRCETSVSGTPTEAFLRLKEVSRESAKVLGGSFDTDWWWGPATRITAQQDDARSR 479
            V +ASS L  GA ARVLTR FG +L   GEL M++ HA +  +         E+LS + + +      TA   A          E   S          ++   E  KVLGG FDT WWWG    +T+ +   R R
Sbjct:  397 VAMASSRLTAGAAARVLTRLFGAKLHPGGELAMSQLHARHAATDD-------EDLSANGAPHSAAPAATASAAA----GFPSLGEVFPSDGSVSQADACRDPFEEGTKVLGGPFDTVWWWGSGDNLTSDRILERHR 521
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig107.668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LQR5_9PHAE6.670e-633.82JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig107contigD-herbacea_F_contig107:252741..257810 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size653
Cds size621
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig107.668.1prot_D-herbacea_F_contig107.668.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig107 252773..257810 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927478.3777697-UTR-D-herbacea_F_contig107:252740..2527721622927478.3777697-UTR-D-herbacea_F_contig107:252740..252772Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig107 252741..252772 +
1690790192.4239028-UTR-D-herbacea_F_contig107:252740..2527721690790192.4239028-UTR-D-herbacea_F_contig107:252740..252772Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig107 252741..252772 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927478.3881626-CDS-D-herbacea_F_contig107:252772..2529161622927478.3881626-CDS-D-herbacea_F_contig107:252772..252916Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig107 252773..252916 +
1690790192.4338186-CDS-D-herbacea_F_contig107:252772..2529161690790192.4338186-CDS-D-herbacea_F_contig107:252772..252916Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig107 252773..252916 +
1622927478.3981724-CDS-D-herbacea_F_contig107:253753..2538591622927478.3981724-CDS-D-herbacea_F_contig107:253753..253859Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig107 253754..253859 +
1690790192.4481623-CDS-D-herbacea_F_contig107:253753..2538591690790192.4481623-CDS-D-herbacea_F_contig107:253753..253859Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig107 253754..253859 +
1622927478.409689-CDS-D-herbacea_F_contig107:254551..2546641622927478.409689-CDS-D-herbacea_F_contig107:254551..254664Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig107 254552..254664 +
1690790192.4680958-CDS-D-herbacea_F_contig107:254551..2546641690790192.4680958-CDS-D-herbacea_F_contig107:254551..254664Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig107 254552..254664 +
1622927478.4216297-CDS-D-herbacea_F_contig107:257552..2578101622927478.4216297-CDS-D-herbacea_F_contig107:257552..257810Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig107 257553..257810 +
1690790192.480619-CDS-D-herbacea_F_contig107:257552..2578101690790192.480619-CDS-D-herbacea_F_contig107:257552..257810Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig107 257553..257810 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig107.668.1

>prot_D-herbacea_F_contig107.668.1 ID=prot_D-herbacea_F_contig107.668.1|Name=mRNA_D-herbacea_F_contig107.668.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=207bp
MSNNASSGGKPRGVILASSWLGPGATARVLTRHFGVRLPSMGELRMAKHH
AVNVLSSVRGSEEQYEELSESRSENRPTSDNTAVFIARNEEADKRRCETS
VSGTPTEAFLRLKEVSRESAKVLGGSFDTDWWWGPATRITAQQDDARSRC
LRPPARSAADDFIAKEDDPQEQTCVGVEEGRTRNDGDGATSRGEGKAAGE
GLRRMVD
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mRNA from alignment at D-herbacea_F_contig107:252741..257810+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig107.668.1 ID=mRNA_D-herbacea_F_contig107.668.1|Name=mRNA_D-herbacea_F_contig107.668.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=5070bp|location=Sequence derived from alignment at D-herbacea_F_contig107:252741..257810+ (Desmarestia herbacea DmunF female)
AGGGGTTTTCGGCGGAGGCGGTGCTGACGTTGATGTCGAACAATGCGTCT
TCTGGAGGGAAACCTAGAGGCGTTATTTTGGCCTCGTCGTGGCTCGGACC
GGGGGCTACCGCGAGGGTTTTGACGAGGCATTTCGGCGTACGATTGCCGT
CGATGGGAGAACTGCGCATGGCAAAGGTAAGATCAACGTTAAGGTTAGAC
ACACGAAAAAAACAAAACTCTTTTATGTGTGGCGTATCGTTTTGGCTTAT
TTTAAGAAGCGCACGTGTTTTTGTTTTATCCTATGTTTTGTGTGTATTTT
TCGTCGTAAGCGGTGCGTGGTAATGGCCTTCCATGGTCAACGATTTGGTC
GGTTATTCGACCTTCATGGTAAGCTGTGGAAGGAAATCTAGTTGTTAATT
GTTTTGCGGGATTATTGCGCTAATTGGTCGGTTATCCGCGGTAATTTCCA
TGGGTGGTACAATACGGTGGTATTACCGTCGTGCCGTGGCGTAACATTCC
TCAATACGTCACCGGTAATGATGACGCCGTTTAACTGCATCTTCCTTGCG
GAGAAAACGCTGCGGTAGCGGCATTCCGAGATTGTTTTTCTCGTGTGATG
CCGTGATTCCCTTTTGCTCAGCTCCACTGAAAACAAAAGTCTTTAAAAGA
CAATTGTTGCAGACGACGCTGCAAGGCGAACTGCGATTTATCATTTTTGT
TTCCGTTGTCGCGATTGCTACGGTACGGAACGGTACGAAGTAAACATTTT
TTGGCACGCTTTGGGTGGTAAGGATGGCGGAAAGATTAGGTCGGTAAGCG
ACCTCGACGGTAACGTTAGGAATGGAATACTGTACATTTTCCTCATTTTT
TGCAGTCATAAAATGGTCCGTAAAAAATCGACCGTTGGCGACGGTAATAC
CCACTGGTGGTATGTTATTGTGAAGGTCCTTGCTTGTTCTTCTAGTGCTG
ACCAGAGGCCCCGTCTCCACCGGCCCTCCCGACGCAATTGTTTTGTTTCC
ACGTCCGCTACAGCACCACGCTGTAAATGTGCTGAGCAGTGTTCGCGGTT
CCGAAGAACAGTACGAAGAACTATCCGAGAGCCGATCTGAGAACCGCCCC
ACTAGTGATAACACTGCAGGTCAGAATCGCTGCCCCCGGACGTGGAGTTG
TGTGTTTCCGAGACAAGGGGGGTTAAATGTGTCTGGGACTACTAGGAGGT
ATATTTGGTTGTAGCTAGAGGGCTCAACACAGCCGTGCACTCATTGGGCT
TCGACCGATGTGACAGGAGTGTTTTTCTGCCCGACGAACGCTATGACAGC
CTTTGGCGTTGAAATAACCGAGGAAGCTTTAAAGCGGCGGTAACTACCCT
CCACGCTCGGTACCGAGCCAAAACAGAGTCAGGCACGATTGCGCGTCTGT
TAGGCAAGCGAGGTTAACTGTCAACACCTAAAGGCTTTGCGTTTTTCGTG
GGCACCTGTCGCTGTTCTCCCCAAACCGACAGTGGAGGGCGTCTTGTAGT
TCTTGTTTTACCTATTAGTGGGCGAGGTTACACCCAGCTTCCGTCACGGA
ACGCGCGAGAGCGTGAGTAAGCACAATTTTCGATGAAACCCGACGAGGGA
CGAAAGTGCTGCACCCTTATCGTGATAAAAACGTAGGCACATACCGTGGT
TGGGGGGGGGGGGGGAGGAGCGCCTTTTTTGTGACCACGGAGCTGAATTA
CGAAGAGGTATAGAGCTGGAGAAAGAATTGGGCAAAGAAAAAACACGCAC
ACACACACACCCGCGATCACCCCCGCTCCCCCGTCTTCCGGCATGTCCAC
TTTTGTTTTAGTTTTTATTGCCAGGAACGAAGAGGCGGATAAAAGGCGAT
GTGAAACCTCCGTTTCTGGCACGCCGACAGAAGCGTTTCTGAGGCTGAAA
GAGGTGTCGAGGGAGAGTGCTAAGGTATCCATCCACCCACCCACCCACCC
CGTTTTGTTTGATGCTGGGGTGCTTTCTCAAGTCTGGCGTTGGCGCCCCA
GCTTGCACAACTCGAGCTATGACAACTCCATTGCATGGGGTATAACTTTT
GTTATTTAGCATTCGATAAAAAGTCGACAAGCTGTGGGAGTTTCTAACCC
TATACGTGATAAAGGCCCCTATACTGATGTCATGGGGGACAAGGGTAAAC
AGCTGTGACCACGACTTGCTAACTAAACCGCTGAGCGGTGAGCCCCTTTG
AGCGAGCCGCCTTTACTTAGCGTTTTTGTAGCAGCGTCGGATCTTTAGGT
TGTTGTTTTTTTTATTCTATGATTAGTAACTACGTGGGGGCAGTCATAGA
AACCCTCGGTCGCATGAGAAGTGGCCACGGAGATTCGGGTGGGTTCGTCG
TTCAGTAGTCGTTCGACGCGTCCGCTGTGGTGAGACGGGCGGGAGGGAAA
AAAATCATATCACTAACCCGACAACAATAACCCTAACCCTATCGAGCACA
CTGTAATCATAGAGAGTCGGTCCCTCTCTGAAGATCCGACCTATCAACCA
TAGTGCTAAACCTACTGCCGCAGAGGACAAGGGTTTATTATTCATCCTAC
TACAAAGATCACATACTAGAGGCTCTAGAGCTATAGAGGATAAGGCGTAA
TCATTACCTTACCTTGCTGTACTTGGGGAAATGTACCTACTATCATATAC
TGTGATTTTGGGGGACGACCCTATTAATAGTATACTTCGAAGTATACTCT
TGTCAGGAAGGAGTACGTACAGAATGGGGACGGCCTCAGAATAGATTAAA
AAATGCGCTTGATCGTACTCTTACCAGGAGTCAGGAGTACGTACAAGCAC
GAATGTTACTGTTTTGTTTTTGTTTTGTTTTGTTGAGAAAGTCGTGCTCC
GCATCTGTGATTTTGCGGTACGCCTCTGCAGAATTGTCGCATGCTACTCT
GGATAATACTTTTTGAACTTGGTGTTGTCGTACTCTCGTGCTCGAGAAGG
GTGGTAACATCAAATCCAAGACGCAGATCGAGAGCATGCGAAAGGTCTGC
AAAGCGCACGCACTGCAGTATCATTGACACGGATCGCGACTTCATCGACA
AGCAGTGAGGCAGGCCCATACTCGTAATTACTCGTAACACAGACGGCGAG
GGATTTCGGGATAGAAGTGTGAACCGCGATGTTTTTTTTTATCGTCGTTC
GTACGAGTATACGCCTACTGTACCCACGAGTGCGATGTGGCGCTCTATGT
ACGTTCGGGCGTAGGTGATATGTTGAACACGTAAAGAAATCTTACGCTTT
CACCGAGCAATTGTCTCTTGCGTGGTTGATTCTTTCAAAAACGTTCAGTA
CGCATCCGTCTACGAGGTCGAGTGGTTGCCATTCGAATCACAGCAGTTGG
CACTTTTGTCTCCCCGACAACATTCGCTTGTCGGGAAACCGTCACACCCC
GCTCAATTGTTCGAATCTGGAGTGTTAGCAACAATAGTTCCGTGCTTTAG
CGTACAGTAGTAGTAGTAGCAACGCAAGGGACCATGACCAGACAAGCAGC
AGCATGGATTTTATCCTTGTGAAAAAAAAAATGCGGCCTGTATGTTGTTG
TCGGCGATAGTCTGGTGTGTATTTATTCGCCCGGCCGGCGAGGTCATTCA
TTTCATTGGTCTGCCACCGGTGTCAGGCACACTGTATGCTTGCCCCCTCC
CCACCCCACTGTTATCTTCCCCTCGCCGTATAGATTACAGAATGTTAGAC
GGTATCTTTGGGGAGAATTTTATTGCCTATATGTAGGGTTGTGGGTTTAG
GTTAGGGTTAGGCATAGTTTCTAGGGCTCTCCATGCCTTGTTGCGTACTC
CACGTTCGTACTATTAATATGTGGTATGGTAAGCGATACCCCCAAAATAT
TCATTTTATTGTTGTGTAGTCCGACCTCGCCAACAAGGCTACTTACTACC
TACTGTAGTAGACCACTTGCAATAAAAAATAAAAAAAATATTACAAAAAA
AATCACCTTGGAGGGAAATCGCATGGAAACAAAAACGTTTTTTTTTTTAG
TACCATTTAAAAAAAAACTTTTTTTTTTCATGCGATTTTTCCCCCAGGGC
GATTTTTTTTTTTTTTCTTACTGCAAATGGTCTTTAAGCAGGGAAGTGTA
CTTATGGCGTCTGCCGGTGAACTGCGGCCGATAGACGCTAAACAAACGAA
GTATTGTCGAGCATAGATGAAGAACAAGCATGGGTTCAGTTATATGACCA
ACCGGCCTGCCTCTCTTTTACTATTTTCTATTATAGTTTTTGAGCCTGTT
TTGGTGGTTTTAGTGCCCATGCCTGCCGTGTCCCTGTAAACTCCTATGCT
ACTATACACATAAAATCCCAGGCAATGCATTCTCCAATAGCATGTTTGCC
TGGTTTTGTCGTACTCACAACTTTGTTTCTTAGTCTGTTTTTTTTTTCTT
GCTTCCGTTTTTTTGCGGTGCAGCAAACAAGGGATGGCAAGTAGGTCAGG
TGATAGATTATCGCCCCTCTTGGCGGAATTTCGGAGTTCGATTCCCGGTG
AACACAAAATGACACTTTCCTGTGCCCATCTTGCGTCGCGGAAAGCGCGA
GAGCGCGAGTACGCACAACTCGATGAAAGTCGACGAGGGAAGAAAGTGAC
GCGCTCTTCTCGCGATATAATTATAGGTACGTAGCGTAATGGGGAGGGGG
GAGCGCCTGCTATGTGACCCCAGATCTGAGGTTACCAAGAGAGACGGTGG
AGAAGGAATAGGGTGAAGACACCTATATATGGGATGCAAAACAAAGGAAA
ATAACGTAAGAAATGGTCCCCTTTTTATCGTTACGTAAACTTCACACGGC
TATCGTCACCAGGTGCTCGGAGGATCCTTCGATACGGACTGGTGGTGGGG
GCCAGCTACGCGCATTACAGCGCAACAAGACGACGCCCGCAGTAGGTGTT
TACGACCCCCCGCTCGCTCCGCGGCAGACGATTTTATAGCCAAGGAGGAC
GATCCTCAAGAGCAAACCTGCGTCGGCGTAGAAGAAGGGCGGACGAGAAA
CGACGGGGACGGTGCGACGTCGCGGGGAGAAGGAAAGGCGGCCGGGGAAG
GGCTACGACGCATGGTCGAC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig107:252741..257810+

>mRNA_D-herbacea_F_contig107.668.1 ID=mRNA_D-herbacea_F_contig107.668.1|Name=mRNA_D-herbacea_F_contig107.668.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1242bp|location=Sequence derived from alignment at D-herbacea_F_contig107:252741..257810+ (Desmarestia herbacea DmunF female)
ATGTCGAACAATGCGTCTTCTGGAGGGAAACCTAGAGGCGTTATTTTGGC
CTCGTCGTGGCTCGGACCGGGGGCTACCGCGAGGGTTTTGACGAGGCATT
TCGGCGTACGATTGCCGTCGATGGGAGAACTGCGCATGGCAAAGATGTCG
AACAATGCGTCTTCTGGAGGGAAACCTAGAGGCGTTATTTTGGCCTCGTC
GTGGCTCGGACCGGGGGCTACCGCGAGGGTTTTGACGAGGCATTTCGGCG
TACGATTGCCGTCGATGGGAGAACTGCGCATGGCAAAGCACCACGCTGTA
AATGTGCTGAGCAGTGTTCGCGGTTCCGAAGAACAGTACGAAGAACTATC
CGAGAGCCGATCTGAGAACCGCCCCACTAGTGATAACACTGCAGCACCAC
GCTGTAAATGTGCTGAGCAGTGTTCGCGGTTCCGAAGAACAGTACGAAGA
ACTATCCGAGAGCCGATCTGAGAACCGCCCCACTAGTGATAACACTGCAG
TTTTTATTGCCAGGAACGAAGAGGCGGATAAAAGGCGATGTGAAACCTCC
GTTTCTGGCACGCCGACAGAAGCGTTTCTGAGGCTGAAAGAGGTGTCGAG
GGAGAGTGCTAAGTTTTTATTGCCAGGAACGAAGAGGCGGATAAAAGGCG
ATGTGAAACCTCCGTTTCTGGCACGCCGACAGAAGCGTTTCTGAGGCTGA
AAGAGGTGTCGAGGGAGAGTGCTAAGGTGCTCGGAGGATCCTTCGATACG
GACTGGTGGTGGGGGCCAGCTACGCGCATTACAGCGCAACAAGACGACGC
CCGCAGTAGGTGTTTACGACCCCCCGCTCGCTCCGCGGCAGACGATTTTA
TAGCCAAGGAGGACGATCCTCAAGAGCAAACCTGCGTCGGCGTAGAAGAA
GGGCGGACGAGAAACGACGGGGACGGTGCGACGTCGCGGGGAGAAGGAAA
GGCGGCCGGGGAAGGGCTACGACGCATGGTCGACGTGCTCGGAGGATCCT
TCGATACGGACTGGTGGTGGGGGCCAGCTACGCGCATTACAGCGCAACAA
GACGACGCCCGCAGTAGGTGTTTACGACCCCCCGCTCGCTCCGCGGCAGA
CGATTTTATAGCCAAGGAGGACGATCCTCAAGAGCAAACCTGCGTCGGCG
TAGAAGAAGGGCGGACGAGAAACGACGGGGACGGTGCGACGTCGCGGGGA
GAAGGAAAGGCGGCCGGGGAAGGGCTACGACGCATGGTCGAC
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