prot_D-herbacea_F_contig107.668.1 (polypeptide) Desmarestia herbacea DmunF female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-herbacea_F_contig107.668.1
Unique Nameprot_D-herbacea_F_contig107.668.1
Typepolypeptide
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Sequence length207
Homology
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BLAST of mRNA_D-herbacea_F_contig107.668.1 vs. uniprot
Match: A0A6H5LQR5_9PHAE (JmjC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQR5_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 3.000e-6
Identity = 46/136 (33.82%), Postives = 61/136 (44.85%), Query Frame = 0 
Query:   14 VILASSWLGPGATARVLTRHFGVRLPSMGELRMAKHHAVNVLSSVRGSEEQYEELSESRSENRPTSDNTAVFIARNEEADKRRCETSVSGTPTEAFLRLKEVSRESAKVLGGSFDTDWWWGPATRITAQQDDARSR 149
            V +ASS L  GA ARVLTR FG +L   GEL M++ HA +  +         E+LS + + +      TA   A          E   S          ++   E  KVLGG FDT WWWG    +T+ +   R R
Sbjct:  397 VAMASSRLTAGAAARVLTRLFGAKLHPGGELAMSQLHARHAATDD-------EDLSANGAPHSAAPAATASAAA----GFPSLGEVFPSDGSVSQADACRDPFEEGTKVLGGPFDTVWWWGSGDNLTSDRILERHR 521
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig107.668.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LQR5_9PHAE3.000e-633.82JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Desmarestia herbacea DmunF female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 14..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 23..27
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 28..207
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig107contigD-herbacea_F_contig107:252773..257810 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Desmarestia herbacea DmunF female2022-09-29
Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-16
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig107.668.1mRNA_D-herbacea_F_contig107.668.1Desmarestia herbacea DmunF femalemRNAD-herbacea_F_contig107 252741..257810 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-herbacea_F_contig107.668.1 ID=prot_D-herbacea_F_contig107.668.1|Name=mRNA_D-herbacea_F_contig107.668.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=207bp
MSNNASSGGKPRGVILASSWLGPGATARVLTRHFGVRLPSMGELRMAKHH
AVNVLSSVRGSEEQYEELSESRSENRPTSDNTAVFIARNEEADKRRCETS
VSGTPTEAFLRLKEVSRESAKVLGGSFDTDWWWGPATRITAQQDDARSRC
LRPPARSAADDFIAKEDDPQEQTCVGVEEGRTRNDGDGATSRGEGKAAGE
GLRRMVD
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