mRNA_D-herbacea_F_contig107.660.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig107.660.1
Unique NamemRNA_D-herbacea_F_contig107.660.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig107.660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig107contigD-herbacea_F_contig107:14430..15416 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size191
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927475.7388003-CDS-D-herbacea_F_contig107:14431..145071622927475.7388003-CDS-D-herbacea_F_contig107:14431..14507Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig107 14432..14507 -
1690790191.3518665-CDS-D-herbacea_F_contig107:14431..145071690790191.3518665-CDS-D-herbacea_F_contig107:14431..14507Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig107 14432..14507 -
1622927475.752574-CDS-D-herbacea_F_contig107:15303..154161622927475.752574-CDS-D-herbacea_F_contig107:15303..15416Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig107 15304..15416 -
1690790191.3608437-CDS-D-herbacea_F_contig107:15303..154161690790191.3608437-CDS-D-herbacea_F_contig107:15303..15416Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig107 15304..15416 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig107.660.1prot_D-herbacea_F_contig107.660.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig107 14432..15416 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig107.660.1

>prot_D-herbacea_F_contig107.660.1 ID=prot_D-herbacea_F_contig107.660.1|Name=mRNA_D-herbacea_F_contig107.660.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=63bp
QPSSFCGGRITPFPHSGVSDRTSCILTFTRLRGDAWERPRTGAERNRRED
SHGNARYERNYGR
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mRNA from alignment at D-herbacea_F_contig107:14430..15416-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig107.660.1 ID=mRNA_D-herbacea_F_contig107.660.1|Name=mRNA_D-herbacea_F_contig107.660.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=987bp|location=Sequence derived from alignment at D-herbacea_F_contig107:14430..15416- (Desmarestia herbacea DmunF female)
CAACCATCATCTTTCTGCGGGGGTCGCATAACTCCTTTCCCTCACAGTGG
CGTCAGTGACAGGACAAGCTGTATTCTCACGTTCACGCGGTTGCGCGGAG
ATGCCTGGGAAAGGTGAGAGGGTGTTGGATCCAAAATTTGGGAGTGATGT
GCTTCGTACGCTTTCCGTTCCTCGCACTCGGGCCACTGCTGTTGCGGACA
GTGGTTCTGCAGCGGGCAATACCGTTGCACCTGGGGCTCGCCGCCGCGTA
AGCGCGCTTGCAGCCCCAATTGCCGCAACTGAGGCTCGCCGCGAAAGCGT
GTTTGCAGCCTGGGCTGTTAATGCCGCTTCCCCTTGGTGGGGGAGTGCTG
CGCTTGTTAGCGTGCAGGCAGTGTTTGCGGGGAAATCTGTTTTGGCAACC
CACAATGTCATCTCGTTCCCTCAACAGACGCTTTCTGGCCCACGCGCTCG
GCCCATAAGTTGCGCAACAGCCTCAACGCAGGCTGAGGTTAGGGGCGCGG
ACCGTGGTCCAGCACGGGATGCTAACGCTGCACCTGGGGCTTACCGCGAA
AGCGCACTCGCAGCCTCCGTAGTTAGGACTATCTCCACGCAGCAGGGAGG
TATATCGCCTGTGGGTAGTAAGCACGAGCAGCGTGCCGGGATTACTGTTG
TGGTTTACCATTACCAGTATTTTACATGGATGCCGCCTTGGCCCTGGCCA
CAATGTCGTTCCGTCCCCTGCTGCCTTGACTGTCTGTGACTCTGCTTTTG
TAGAAAATACTGCTGGAATCGTTGGCAACAACGCTTGGGCGAAGGGGTGC
GAATGGGCACAGAATCGTCGAAATAACTGAGACTACAAATGTTGAGTTGT
CCCATTTGCCGACAAACACCGCAACCGTCGTTCTTTTTTTTTCCGCTGGA
AACTGACAGACCGCGAACGGGTGCAGAGCGTAACCGGAGGGAAGACTCCC
ACGGCAATGCGCGGTACGAGAGGAATTACGGTCGGTC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig107:14430..15416-

>mRNA_D-herbacea_F_contig107.660.1 ID=mRNA_D-herbacea_F_contig107.660.1|Name=mRNA_D-herbacea_F_contig107.660.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=378bp|location=Sequence derived from alignment at D-herbacea_F_contig107:14430..15416- (Desmarestia herbacea DmunF female)
CAACCATCATCTTTCTGCGGGGGTCGCATAACTCCTTTCCCTCACAGTGG
CGTCAGTGACAGGACAAGCTGTATTCTCACGTTCACGCGGTTGCGCGGAG
ATGCCTGGGAAAGCAACCATCATCTTTCTGCGGGGGTCGCATAACTCCTT
TCCCTCACAGTGGCGTCAGTGACAGGACAAGCTGTATTCTCACGTTCACG
CGGTTGCGCGGAGATGCCTGGGAAAGACCGCGAACGGGTGCAGAGCGTAA
CCGGAGGGAAGACTCCCACGGCAATGCGCGGTACGAGAGGAATTACGGTC
GGACCGCGAACGGGTGCAGAGCGTAACCGGAGGGAAGACTCCCACGGCAA
TGCGCGGTACGAGAGGAATTACGGTCGG
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