mRNA_D-herbacea_F_contig105.525.1 (mRNA) Desmarestia herbacea DmunF female
|
Overview
Homology
BLAST of mRNA_D-herbacea_F_contig105.525.1 vs. uniprot
Match: D7FUI1_ECTSI (Ankyrin repeat protein E2_17 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUI1_ECTSI) HSP 1 Score: 174 bits (441), Expect = 9.930e-51 Identity = 82/109 (75.23%), Postives = 98/109 (89.91%), Query Frame = 2
Query: 149 DEYGLTALHYAAWNGHVRCVEVLCINDLGRDEAGIQRSCVDVKSCKGFTALYLAASDGVNGVECIDVLLRAGADRTIRDGDGKTALDAATDAKRVDCASALNLEIGDTK 475
D++GL+ALHYA+WNGHVRCVE+LCINDLG D AG+QRSC+D++S KG+T L+LAASDGVNG++CID LLRAGADR+IRD DGKTAL+AA DA R DCA ALNLEIG+ K
Sbjct: 2 DDFGLSALHYASWNGHVRCVEILCINDLGHDGAGLQRSCIDLRSIKGWTPLHLAASDGVNGMKCIDALLRAGADRSIRDVDGKTALEAAIDAGRDDCARALNLEIGNAK 110
BLAST of mRNA_D-herbacea_F_contig105.525.1 vs. uniprot
Match: A0A7S2K9U8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K9U8_9STRA) HSP 1 Score: 115 bits (289), Expect = 5.250e-27 Identity = 76/196 (38.78%), Postives = 101/196 (51.53%), Query Frame = 2
Query: 56 MSGDLLRQGAIFGDVDSIKALLEQGGNPCSTDEYGLTALHYAAWNGHVRCVEVLCINDLG-RDEAGIQRSCVDV--KSCKGFTALYLAASDGVNGVECIDVLLRAGADRTIRDGDGKTALDAATDAKRVDCASAL-NLEIGDTKNLADYRKKMEANLKVQRAQLMLITPGGAQKRRVPKPPSLMMHEDEIRPFSEK 631
MSG+ LR AI GD++ +K L+ G NPCS D+ G+T LHYAAWNGH+ CVE L +ND G E G + SC+++ KSC G+TAL+L G+ +C LL AGAD I D K D A + + A + N + Y + M KV+RA P L+ E EI PF+ K
Sbjct: 1 MSGENLRSAAIIGDLNQVKELIAGGANPCSVDDDGMTPLHYAAWNGHIDCVEFLVVNDKGISTETGEKYSCINIQTKSC-GYTALHLCVKSGIETKKCCQALLFAGADPNITDDLAKLPFDLAKNNGMDEVAEIISNFLSNENSEHEHYLQDMIRKHKVRRA---------------PSNQHLLDAEGEIIPFALK 180
BLAST of mRNA_D-herbacea_F_contig105.525.1 vs. uniprot
Match: A0A7S4VTH5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VTH5_9STRA) HSP 1 Score: 114 bits (285), Expect = 1.110e-25 Identity = 89/289 (30.80%), Postives = 132/289 (45.67%), Query Frame = 2
Query: 56 MSGDLLRQGAIFGDVDSIKALLEQGGNPCSTDEYGLTALHYAAWNGHVRCVEVLCINDLGRD-EAGIQRSCVDVKSCKGFTALYLAA----------------------SDGVNGVECIDVLLRAGADR-TIRDGDGKTALDAATDAKRVDCASALN-LEIGDTKNLADYRKKMEANLKVQRAQLMLITPGGAQKRRVPK-------------------------------PPSLMMHEDEIRPFSEKHFVGKHSPET-----IRNLIIATEQARINESRRKALAESQD 739
MSGD LR A+ G +K LL G NPCS DE GLTALHYA WNGH++CVE+L N G+ E G S ++++S G+TAL++ A + +EC +LL GAD +RD +GK+A+D A +A S N ++ + + ++ + + A +Q + + T G + K P L +HE I PF++K F K P + IRNL++ +QA N RR+ L S++
Sbjct: 1 MSGDQLRNFAVVGYFLELKNLLAGGANPCSVDEKGLTALHYAVWNGHLQCVEILVANHWGKHHETGDVCSSINLQSKTGYTALHIVAMRMAALLEDESYDANENSDERQTKESENIECCRLLLMVGADCIALRDIEGKSAIDLAREAGNESLVSVFNSVKRPSEQQVQEFTESILAKHMMQHRRKVATTIGDPANNDIAKNNIGESGENDSWVSFHDSNIFPPCREDKILIPKELDVHEHRILPFAKKLFSSKQKPGSSGAMKIRNLVMLLDQANRNIDRREKLVNSRN 289
BLAST of mRNA_D-herbacea_F_contig105.525.1 vs. uniprot
Match: A0A835Z6I7_9STRA (Ankyrin repeat protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6I7_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 9.600e-22 Identity = 50/101 (49.50%), Postives = 65/101 (64.36%), Query Frame = 2
Query: 152 EYGLTALHYAAWNGHVRCVEVLCINDLGRDEAGIQRSCVDVKSCKGFTALYLAASDGVNGVECIDVLLRAGADRTIRDGDGKTALDAATDAKRVDCASALN 454
++GLTALHYA +NG+ CVEVLC N G D G SC+D+ S G TAL+LAA++ N I++LL +GAD IRDG G+TA D A + R A L+
Sbjct: 3 DHGLTALHYAVFNGNTLCVEVLCANASGHDANGHHCSCIDMVSTMGCTALHLAAAEASNAAAIIEILLSSGADAAIRDGQGRTAADVAAEKGRHQYAEVLS 103
BLAST of mRNA_D-herbacea_F_contig105.525.1 vs. uniprot
Match: A0A482S1M6_9ARCH (Ankyrin repeat protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S1M6_9ARCH) HSP 1 Score: 83.2 bits (204), Expect = 2.780e-16 Identity = 37/83 (44.58%), Postives = 53/83 (63.86%), Query Frame = 2
Query: 56 MSGDLLRQGAIFGDVDSIKALLEQGGNPCSTDEYGLTALHYAAWNGHVRCVEVLCINDLGRDEAGIQRSCVDVKSCKGFTALY 304
MS +RQ I ++ ++ L++ N CS DE+GLTALHYA WNGHV CV++L N G D G + +C+++KSC G T +
Sbjct: 1 MSEAKVRQACIHNRIEELEVLVKARANVCSIDEWGLTALHYAVWNGHVECVKLLVFNSHGVDSKGQKTTCLNMKSCIGLTGTH 83
BLAST of mRNA_D-herbacea_F_contig105.525.1 vs. uniprot
Match: A0A7S3ZR81_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZR81_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 6.220e-15 Identity = 38/60 (63.33%), Postives = 47/60 (78.33%), Query Frame = 2
Query: 56 MSGDLLRQGAIFGDVDSIKALLEQGGNPCSTDEYGLTALHYAAWNGHVRCVEVLCINDLG 235
MSG +LR+ A GDV+ +K LLE GGNPCSTD+ GL ALH+A WNGHV VE+L +ND+G
Sbjct: 1 MSGSVLREAAAQGDVEYLKELLETGGNPCSTDDNGLNALHFAVWNGHVEAVELLVVNDVG 60
BLAST of mRNA_D-herbacea_F_contig105.525.1 vs. uniprot
Match: F0YDZ5_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDZ5_AURAN) HSP 1 Score: 79.3 bits (194), Expect = 1.330e-12 Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = 2
Query: 56 MSGDLLRQGAIFGDVDSIKALLEQGGNPCSTDEYGLTALHYAAWNGHVRCVEVLCINDLG 235
MSG +LR+ A GD ++ L+ GGNPCS+DE GL LH+A WNGHV CVE+L +NDLG
Sbjct: 1 MSGTVLRETAAQGDATYLRELILGGGNPCSSDENGLCPLHFATWNGHVECVELLVVNDLG 60
BLAST of mRNA_D-herbacea_F_contig105.525.1 vs. uniprot
Match: A0A7S2RNC7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RNC7_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 3.080e-9 Identity = 74/232 (31.90%), Postives = 105/232 (45.26%), Query Frame = 2
Query: 164 TALHYAAWNGHVRCVEVLCINDLGRDEAGIQRSCVDVKSCK-GFTALYLAASDGVNGVECIDVLLRAGADRTIRDGD----------GKTALDAAT-DAKRVD-----CASALNLEI---GDTKNL--ADYRKKMEANLKVQRAQLMLITPG--------GAQKRRVPKP-------PSLMMHEDEIRPFSEKHFV---GKHSPETIRNLIIATEQARINESRRKALAESQD 739
TALHYA NGH+ VE+LC+ND GRDE G S + ++ G++AL+ A + G + V L+ G + +RD G TALD AT AK+ CA AL+ + D + L A +RK +E++ +Q L G G P P P L + E F+ ++ GK + +R EQA IN SRR LA +Q+
Sbjct: 16 TALHYAVLNGHLYSVELLCMNDKGRDEDGNISSALQYQTKDVGWSALHCAVARGKHAVAMTRALIALGVEPGLRDTQQPSLVPKLCQGNTALDLATAQAKQGSAVAELCARALSEILHRSSDDRGLWVASHRKALESSHCLQHCSLASGADGVLDFDVDQGFPAECAPPPVRSPFLPPELHVAEHLHEAFAVQNLQALRGKFGTKALRXXXXXEEQASINASRRFQLAHAQE 247
BLAST of mRNA_D-herbacea_F_contig105.525.1 vs. uniprot
Match: UPI00096B4C65 (ankyrin repeat domain-containing protein 39 isoform X1 n=1 Tax=Aethina tumida TaxID=116153 RepID=UPI00096B4C65) HSP 1 Score: 62.4 bits (150), Expect = 3.530e-8 Identity = 46/123 (37.40%), Postives = 66/123 (53.66%), Query Frame = 2
Query: 83 AIFGDVDSIKALLEQGGNPCSTDEYGLTALHYAAWNGHVRCVEVLCINDLGRDEAGIQRSCVDVKSCKGFTALYLAASDGVNGVECIDVLLRAGADRTIRDGDGKTALDAATDAKRVDCASAL 451
A++G++D IK L++ + +TD+YG TALHYAA NG + + L + A + V K + T L+ A S G V ++ LL GAD +IRD DGK A+D A D R + L
Sbjct: 37 AMYGEIDKIKKCLDKT-DVNTTDKYGFTALHYAARNGQLEACKYLV-----KRGANVN---VQTKELRA-TPLHRAVSVGHQAV--VEYLLSVGADASIRDSDGKLAVDRAKDNGRATIMAVL 147
BLAST of mRNA_D-herbacea_F_contig105.525.1 vs. uniprot
Match: A0A1Y2CWT3_9FUNG (Ankyrin n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2CWT3_9FUNG) HSP 1 Score: 58.9 bits (141), Expect = 7.270e-7 Identity = 52/134 (38.81%), Postives = 66/134 (49.25%), Query Frame = 2
Query: 71 LRQGAIFGDVDSIKALLEQGGNPCSTDEYGLTALHYAAWNGHVRCVEVLCINDLGRDEAGIQRSCVDVKSCK-GFTALYLAASDGVNGVECIDVLLRAGADRTIRDGDGKTALDAATDAKRVDCASALNLEIGD 469
L A+ G++ + L + N S D+ G TALHYAA NGHV CV+ L LG D VD+++ G TAL A GV ++VLL AGAD I+DGD R DC + LN GD
Sbjct: 41 LHNAALVGNLAKLNKLATRE-NVNSYDQSGYTALHYAARNGHVECVKALIA--LGTD--------VDLRTVGLGTTALMRAVLGRSTGV--VEVLLLAGADVGIKDGD------------RRDCFTILNGMTGD 149 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig105.525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig105.525.1 >prot_D-herbacea_F_contig105.525.1 ID=prot_D-herbacea_F_contig105.525.1|Name=mRNA_D-herbacea_F_contig105.525.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=241bp MSGDLLRQGAIFGDVDSIKALLEQGGNPCSTDEYGLTALHYAAWNGHVRCback to top mRNA from alignment at D-herbacea_F_contig105:159124..163495+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig105.525.1 ID=mRNA_D-herbacea_F_contig105.525.1|Name=mRNA_D-herbacea_F_contig105.525.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=4372bp|location=Sequence derived from alignment at D-herbacea_F_contig105:159124..163495+ (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig105:159124..163495+ >mRNA_D-herbacea_F_contig105.525.1 ID=mRNA_D-herbacea_F_contig105.525.1|Name=mRNA_D-herbacea_F_contig105.525.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1446bp|location=Sequence derived from alignment at D-herbacea_F_contig105:159124..163495+ (Desmarestia herbacea DmunF female)back to top |