mRNA_D-herbacea_F_contig105.524.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig105.524.1 vs. uniprot
Match: D8LSG5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSG5_ECTSI) HSP 1 Score: 404 bits (1037), Expect = 9.290e-122 Identity = 384/1060 (36.23%), Postives = 471/1060 (44.43%), Query Frame = 1
Query: 1 PRSFELPTENFVRKTGLRDRGPPGFEYNNPKYLSISTT-KPGSPVFLSPSAGRNATLPGVHVRAYAATPTRSGQLEEAEAAAQSRSEEARKIATKSRRDRKIAAANKEV---------GPGVTGT----LWKSPQGLSTVLFNVPRSRAIEDHAWREALKAKAQALRASPRAGKPVVNAGSTGGRRGGAPSHGLQCGRGIAIVGTRSAFQGVKVPADALDRPFAGGTELDALSGRVESLIFPERYVDWPKA-ASLPALAVDIQSSPIRHAVAFSSKQPRIVCHDPQRETRGWDGPGAFEWNEAATTAEAEVGVVVSSAQRNDDSNGSVVATGNGNGNKGRASFGSRTKG-LRPRGISVRDPERESRVFREGSTGFISPCQTNVRGFA------------AATVNGKETPSAGEESG-----------------AAREKAEVMSGDDGGGSPSKKPGRGPNSGRKMPQKLWMFQMAEKEYEPADATESWDGPGAYDVNRQDEVQVKEPGRMSPVFREGAS-KRGPA--RWERDVSAFPTWPGGRTGTSGTTTSSPSGDEGRKSPATPDILANWTFSSPEFSPPEPRTIAHDVKRGPVRFGACFLSVTERFDPAGGPYATSSVPTLEWAEPGGAASGGRGENGRGRGFAGPVQRYDLITCRKQPSTANTWLGTSIRPGLPYNPSLAVDTTAPTTSSTXXXXXXXXXXXXPSSYPVTDTSETSAVMDTDTIDSGESMAVVGATGGGTTGASGQASLSAVG------RAAGVPRRVL-AAEAXXXXXXXXXXXGLARNWAGSRRDSNAGRGGXXXAVATTDRKYGEEETGVAMIVGAGECPRRDVSLLASTLATVAETTPAATTPPAGAMVGTRTAASLHHQARSRSGKPGPITRSNXXXXXXXXXXXAAKSLSGQADGGVRGRRCTS-----------------TTITEERLAAAEASMTAAEAVQEA-AMAGSSGLIRTVGRAKRGPCMLTLSSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKDHRGSSGSSSMRRV--WEAEENGGLLGPGETKVLVC 2955
PR FE PTE FVRKTG+RD+GP G+EYNN +YLS+S KP +P PTR +LE+A AAQ+R++EARKIA KSR DR + AN PG T WK G T + PRSR++ED A REA++AKAQA+ ASPR GKP RGG L+ RG A R + G+ +P + ++PFAGG E+DAL GR+ESLIFP+RYVDWPK ASLPALA+D+Q SPIRHAVAF SKQPRIVC+DPQRETRGWDGPGA+EW++ S KG RPRGI+VRDP R S FREGS+ F+SP QTNVRGFA AA G++ + G E +AR S +KK G + R+ PQ LWMF+ +E EPA AT W+GPGAY + V+VKEPGR SPVFREG+ KRG R ER+ P G + G+ SP TP+ LA+W+ PEFSPP P+ G AGPV+RYDL++ R+QP A + G++ G D G G GA SL+AVG + + RRVL AA A XXXXXXXXX GLARNWAG + D++A RGG A DR+ G V A + V + +TVAE A +T G R AAS + R G +S A ++ A GG+ R ++ +TE LAAAE M AAE + A A A LIRTVGRAKRGPCMLTL+ + RG S S + WE E GGLLG GETKVL C
Sbjct: 46 PRGFEQPTETFVRKTGMRDKGPLGYEYNNTEYLSVSAAVKPCTP-----------------------GPTRDDRLEDAGKAAQTRADEARKIAMKSRWDRHVLRANPAKTAKSRTSTNSPGSTNKPSALSWKQSTGSLTPIIRPPRSRSLEDQALREAIEAKAQAMAASPREGKPDPETQRR--LRGGGNRRKLK--RGPAASDKRDMYHGIAMPGNTFEKPFAGGNEVDALPGRLESLIFPQRYVDWPKEDASLPALALDVQRSPIRHAVAFRSKQPRIVCYDPQRETRGWDGPGAYEWDDRPDDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKSAEKGGARPRGIAVRDPGRPSPAFREGSSAFLSPTQTNVRGFALAPSSKRVDAAAAAAAEGRDVTATGAEXXXXXXXXXXXXXXXXXXXSAR-------------SAAKKKAHGGH--RRKPQTLWMFKPPGREPEPAVATLGWEGPGAYAIEIGTGVRVKEPGRKSPVFREGSGGKRGRDVDRREREKMVSPGGVSSSAGPMPEGFAVGPGENRMDSPGTPESLASWSSLYPEFSPPAPKM------------------------------------------------------SNGGDMAGPVERYDLVSSRRQPPPATSIGGSNAADG---------------------------------------------------DDGAGGRTRGGVASGSEGGALAPLSLAAVGTRLVSSQKRTLARRVLPAAAAAXXXXXXXXXAGLARNWAGRQADAHAARGGRGPGGAEADRQDGLRSDSTD--VRANGMMTQGVDDMPEPSSTVAELFEALSTDAGPPTHGRRVAASSYR----RQGWRHEEYQSKKKRSVSSVNEIGAGDVAQTAGGGLATRNTSAFGGGGPASHAPRQTADGVAMTEAGLAAAE--MAAAEIEKAATAAAAEKSLIRTVGRAKRGPCMLTLTPSSSYEIGQQAARAGTTCRTGEVLQEQTL------RGDSFGSCRGPLVFWEVEPAGGLLGSGETKVLRC 944 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig105.524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig105.524.1 >prot_D-herbacea_F_contig105.524.1 ID=prot_D-herbacea_F_contig105.524.1|Name=mRNA_D-herbacea_F_contig105.524.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=986bp PRSFELPTENFVRKTGLRDRGPPGFEYNNPKYLSISTTKPGSPVFLSPSAback to top mRNA from alignment at D-herbacea_F_contig105:142834..153447+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig105.524.1 ID=mRNA_D-herbacea_F_contig105.524.1|Name=mRNA_D-herbacea_F_contig105.524.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=10614bp|location=Sequence derived from alignment at D-herbacea_F_contig105:142834..153447+ (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig105:142834..153447+ >mRNA_D-herbacea_F_contig105.524.1 ID=mRNA_D-herbacea_F_contig105.524.1|Name=mRNA_D-herbacea_F_contig105.524.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=5916bp|location=Sequence derived from alignment at D-herbacea_F_contig105:142834..153447+ (Desmarestia herbacea DmunF female)back to top |