mRNA_D-herbacea_F_contig1049.515.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1049.515.1
Unique NamemRNA_D-herbacea_F_contig1049.515.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig1049.515.1 vs. uniprot
Match: A0A6H5KGH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGH8_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 5.660e-14
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:  220 GGPDLGPWGLPWFWWPIFVLVVPYIILATIGILVIKQAAA-CTTDATGGDQT 372
            GGP +GPWGLPWF WPIFVL++PY+IL TIG++VI+ A   CTT+  GG  T
Sbjct:   58 GGPAMGPWGLPWFCWPIFVLLIPYVILVTIGVMVIQYALPWCTTETAGGRVT 109
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1049.515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KGH8_9PHAE5.660e-1463.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1049contigD-herbacea_F_contig1049:65099..65555 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-00_005190.1
Exons2
Model size381
Cds size381
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927459.0493176-CDS-D-herbacea_F_contig1049:65098..652861622927459.0493176-CDS-D-herbacea_F_contig1049:65098..65286Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1049 65099..65286 +
1690790181.670062-CDS-D-herbacea_F_contig1049:65098..652861690790181.670062-CDS-D-herbacea_F_contig1049:65098..65286Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1049 65099..65286 +
1622927459.0653448-CDS-D-herbacea_F_contig1049:65362..655551622927459.0653448-CDS-D-herbacea_F_contig1049:65362..65555Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1049 65363..65555 +
1690790181.6791744-CDS-D-herbacea_F_contig1049:65362..655551690790181.6791744-CDS-D-herbacea_F_contig1049:65362..65555Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1049 65363..65555 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1049.515.1prot_D-herbacea_F_contig1049.515.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1049 65099..65555 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1049.515.1

>prot_D-herbacea_F_contig1049.515.1 ID=prot_D-herbacea_F_contig1049.515.1|Name=mRNA_D-herbacea_F_contig1049.515.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=127bp
MSGPGGGGGFGGGGGGFGGGGGFGGGGGGFGGGGGGFGGGGGGFGGGGDG
WGRGGGGFGGGGGGRFRLVAVLLGGPDLGPWGLPWFWWPIFVLVVPYIIL
ATIGILVIKQAAACTTDATGGDQTVK*
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mRNA from alignment at D-herbacea_F_contig1049:65099..65555+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1049.515.1 ID=mRNA_D-herbacea_F_contig1049.515.1|Name=mRNA_D-herbacea_F_contig1049.515.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=457bp|location=Sequence derived from alignment at D-herbacea_F_contig1049:65099..65555+ (Desmarestia herbacea DmunF female)
ATGTCTGGTCCGGGCGGCGGCGGCGGCTTTGGTGGAGGAGGAGGCGGCTT
TGGTGGCGGGGGCGGCTTTGGTGGAGGGGGAGGCGGCTTTGGTGGAGGTG
GAGGCGGCTTTGGTGGAGGGGGGGGTGGCTTTGGTGGAGGGGGGGACGGG
TGGGGTAGAGGGGGAGGCGGCTTTGGAGGGGGGGGGGGGTTCGGCGGTGG
AGATTTCGCCGGCGGTGGGTTTGGAGGGCGCGGAGGGGGATATTTGGGGC
CGGGATGGGGGGAGGGGGCGGTTTCGGCTGGTGGCCGTTCTACTGGGGGG
TCCAGACTTGGGGCCTTGGGGGCTGCCGTGGTTTTGGTGGCCCATCTTTG
TGCTCGTGGTGCCCTACATTATCCTGGCGACCATTGGGATTTTGGTGATT
AAGCAGGCGGCCGCGTGTACGACTGACGCTACGGGAGGCGATCAAACGGT
AAAGTAG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1049:65099..65555+

>mRNA_D-herbacea_F_contig1049.515.1 ID=mRNA_D-herbacea_F_contig1049.515.1|Name=mRNA_D-herbacea_F_contig1049.515.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=762bp|location=Sequence derived from alignment at D-herbacea_F_contig1049:65099..65555+ (Desmarestia herbacea DmunF female)
ATGTCTGGTCCGGGCGGCGGCGGCGGCTTTGGTGGAGGAGGAGGCGGCTT
TGGTGGCGGGGGCGGCTTTGGTGGAGGGGGAGGCGGCTTTGGTGGAGGTG
GAGGCGGCTTTGGTGGAGGGGGGGGTGGCTTTGGTGGAGGGGGGGACGGG
TGGGGTAGAGGGGGAGGCGGCTTTGGAGGGGGGGGGGGATGTCTGGTCCG
GGCGGCGGCGGCGGCTTTGGTGGAGGAGGAGGCGGCTTTGGTGGCGGGGG
CGGCTTTGGTGGAGGGGGAGGCGGCTTTGGTGGAGGTGGAGGCGGCTTTG
GTGGAGGGGGGGGTGGCTTTGGTGGAGGGGGGGACGGGTGGGGTAGAGGG
GGAGGCGGCTTTGGAGGGGGGGGGGGGGGGCGGTTTCGGCTGGTGGCCGT
TCTACTGGGGGGTCCAGACTTGGGGCCTTGGGGGCTGCCGTGGTTTTGGT
GGCCCATCTTTGTGCTCGTGGTGCCCTACATTATCCTGGCGACCATTGGG
ATTTTGGTGATTAAGCAGGCGGCCGCGTGTACGACTGACGCTACGGGAGG
CGATCAAACGGTAAAGTAGGGGGCGGTTTCGGCTGGTGGCCGTTCTACTG
GGGGGTCCAGACTTGGGGCCTTGGGGGCTGCCGTGGTTTTGGTGGCCCAT
CTTTGTGCTCGTGGTGCCCTACATTATCCTGGCGACCATTGGGATTTTGG
TGATTAAGCAGGCGGCCGCGTGTACGACTGACGCTACGGGAGGCGATCAA
ACGGTAAAGTAG
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